Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_N19-2
(551 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A precursor ... 32 1.0
sp|O16974|SRG53_CAEEL Serpentine receptor class gamma-53 (P... 31 1.8
sp|P10845|BXA1_CLOBO Botulinum neurotoxin type A precursor ... 31 1.8
sp|Q44598|TRPE_BUCSC Anthranilate synthase component I 30 5.1
sp|P46215|SYI_SULAC Isoleucyl-tRNA synthetase (Isoleucine--... 29 6.7
sp|P48993|TAL2_ANASP Transaldolase 2 29 8.8
>sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A precursor (BoNT/A) (Bontoxilysin A)
(BOTOX) [Contains: Botulinum neurotoxin A light-chain;
Botulinum neurotoxin A heavy-chain]
Length = 1296
Score = 32.0 bits (71), Expect = 1.0
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 236 INLFIPFIVK*NETLAIANVNNSRKANMSISVRSPVLFSHKSQHKSIVSNKGTLVNKLET 415
+N IP+ VK R + SVR +L K I N+GTLV +++
Sbjct: 797 MNSMIPYAVK-------------RLKDFDASVRDVLL-------KYIYDNRGTLVLQVDR 836
Query: 416 SKDTINSSLLVSIEFEI-KFTKSK 484
KD +N++L I F++ K+ +K
Sbjct: 837 LKDEVNNTLSADIPFQLSKYVDNK 860
>sp|O16974|SRG53_CAEEL Serpentine receptor class gamma-53 (Protein srg-53)
Length = 295
Score = 31.2 bits (69), Expect = 1.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 492 KDSFDFVNFISNSIETNNDEFMVSFDVSSLFTNVPLLETIDLCC 361
+D F F F+ E N F VSF +S++F +V TI +CC
Sbjct: 63 EDGFGFARFL---YEFYNKSFDVSFFLSNVFFHVQSASTICICC 103
>sp|P10845|BXA1_CLOBO Botulinum neurotoxin type A precursor (BoNT/A) (Bontoxilysin A)
(BOTOX) [Contains: Botulinum neurotoxin A light-chain;
Botulinum neurotoxin A heavy-chain]
Length = 1296
Score = 31.2 bits (69), Expect = 1.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 368 KSIVSNKGTLVNKLETSKDTINSSLLVSIEFEI 466
K I N+GTL+ +++ KD +N++L I F++
Sbjct: 821 KYIYDNRGTLIGQVDRLKDKVNNTLSTDIPFQL 853
>sp|Q44598|TRPE_BUCSC Anthranilate synthase component I
Length = 530
Score = 29.6 bits (65), Expect = 5.1
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = -3
Query: 483 FDFVNFISNSIETNNDEF------MVSFDVSSLFTNVPLLETIDLCCD 358
FD + F+ NS++ N + ++D+ S F N+P L+T C D
Sbjct: 124 FDSIRFLINSVKNNKGSKSMFFGGLFAYDLVSSFENLPKLKTSQSCPD 171
>sp|P46215|SYI_SULAC Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
Length = 1050
Score = 29.3 bits (64), Expect = 6.7
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +2
Query: 383 NKGTLVNKLETSKDTINSSLLVSIEFEIKFTKSKLSLHSN---LLTRRCPEQKL 535
+KG ++ K E SK+ ++ + I+F + +LSL+ N LL+ R P+ K+
Sbjct: 946 SKGVVLLKQEMSKEEEEEGIIRDLIRRIQFMRKQLSLNVNEYILLSIRAPDDKV 999
>sp|P48993|TAL2_ANASP Transaldolase 2
Length = 381
Score = 28.9 bits (63), Expect = 8.8
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3
Query: 120 VDDVFLIFGNRDHVKPFQSFMNSLHPNIK 34
V D LI G V+PFQS MNSL +K
Sbjct: 348 VMDELLIEGINKFVQPFQSLMNSLEGKVK 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,498,346
Number of Sequences: 369166
Number of extensions: 968479
Number of successful extensions: 2510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2508
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)