Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_N19-1
(247 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O09053|WRN_MOUSE Werner syndrome helicase homolog 29 2.9
sp|O95786|DDX58_HUMAN Probable ATP-dependent RNA helicase D... 28 5.0
sp|Q725B6|AGRB_LISMF Putative agrB-like protein 28 8.6
>sp|O09053|WRN_MOUSE Werner syndrome helicase homolog
Length = 1401
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = -2
Query: 189 DMDKT-----LSENNIPDEDEEFYQLKINDAEFLTTLHLYYNDDLTES 61
DM++T +SEN + D +++ + K ND + HL NDD +S
Sbjct: 380 DMERTCVIPSISENELQDLEQQAKEEKYNDVSHQLSEHLSPNDDENDS 427
>sp|O95786|DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58 (DEAD-box protein 58)
(Retinoic acid-inducible gene 1 protein) (RIG-1) (RIG-I)
Length = 925
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 216 TWKHNQVVLDMDKTLSENNIPDEDEEFYQLKINDAEFLTTLHL-YYNDDL 70
T K+ Q ++ + K +PD+DEE +I A FL T HL YND L
Sbjct: 506 TQKYEQWIVTVQKACMVFQMPDKDEE---SRICKALFLYTSHLRKYNDAL 552
>sp|Q725B6|AGRB_LISMF Putative agrB-like protein
Length = 204
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 245 YNIILIAVLTLGN-TIKLF*IWIKHYQRTIFQMKTKNFTNLKLMM 114
Y I L+ L L T+ L +W++ Y + KT N T + LMM
Sbjct: 52 YGIALVTGLLLQTVTVHLSYLWLRRYSFGLHATKTLNCTLISLMM 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,309,514
Number of Sequences: 369166
Number of extensions: 372769
Number of successful extensions: 976
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)