Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_N17
(373 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7TUI1|ARLY_PROMP Argininosuccinate lyase (Arginosuccina... 30 2.3
sp|Q04567|YOR3_PRRSL Hypothetical 30.6 kDa protein (ORF3) 29 2.9
sp|Q8DRI4|ARLY_STRR6 Argininosuccinate lyase (Arginosuccina... 29 2.9
sp|P42833|HXT14_YEAST Hexose transporter HXT14 29 2.9
sp|Q5KW95|ARLY_GEOKA Argininosuccinate lyase (Arginosuccina... 29 2.9
sp|P08069|IGF1R_HUMAN Insulin-like growth factor 1 receptor... 29 3.9
sp|Q8ELT9|ARLY_OCEIH Argininosuccinate lyase (Arginosuccina... 29 3.9
sp|P19751|R1AB_CVMJH Replicase polyprotein 1ab (pp1ab) (ORF... 29 3.9
sp|Q9PYA3|R1AB_CVM2 Replicase polyprotein 1ab (pp1ab) (ORF1... 29 3.9
sp|P24062|IGF1R_RAT Insulin-like growth factor 1 receptor p... 28 5.0
>sp|Q7TUI1|ARLY_PROMP Argininosuccinate lyase (Arginosuccinase) (ASAL)
Length = 459
Score = 29.6 bits (65), Expect = 2.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -3
Query: 275 RQKNPDLTVISKGKTGFLYDHIEQV 201
++KNPD+ + +GKTG +Y H++ +
Sbjct: 282 QKKNPDVPELIRGKTGRVYGHLQSL 306
>sp|Q04567|YOR3_PRRSL Hypothetical 30.6 kDa protein (ORF3)
Length = 265
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 32 CCTFHFQLKNFLQILVIIAWLMASVRRICHWFTVNH 139
C FHF L F+ LV A S +C WF + H
Sbjct: 5 CARFHFFLCGFICYLVHSALASNSSSTLCFWFPLAH 40
>sp|Q8DRI4|ARLY_STRR6 Argininosuccinate lyase (Arginosuccinase) (ASAL)
Length = 463
Score = 29.3 bits (64), Expect = 2.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 275 RQKNPDLTVISKGKTGFLYDHI 210
++KNPD+ + +GKTG +Y H+
Sbjct: 285 QKKNPDMAELIRGKTGRVYGHL 306
>sp|P42833|HXT14_YEAST Hexose transporter HXT14
Length = 540
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +2
Query: 197 KTLVRYGHTKIQFYLLI*QL------DQDFSAVVFLGLTCVFIHIF 316
KT + YG T + FY++ + DFS +V + +TC FI F
Sbjct: 404 KTCLLYGSTNLLFYMMTYATVGTFGRETDFSNIVLIIVTCCFIFWF 449
>sp|Q5KW95|ARLY_GEOKA Argininosuccinate lyase (Arginosuccinase) (ASAL)
Length = 459
Score = 29.3 bits (64), Expect = 2.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 275 RQKNPDLTVISKGKTGFLYDHI 210
++KNPD+ + +GKTG +Y H+
Sbjct: 282 QKKNPDMAELIRGKTGRVYGHL 303
>sp|P08069|IGF1R_HUMAN Insulin-like growth factor 1 receptor precursor (Insulin-like
growth factor I receptor) (CD221 antigen) [Contains:
Insulin-like growth factor 1 receptor alpha chain;
Insulin-like growth factor 1 receptor beta chain]
Length = 1367
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 362 FNY-LNLFTITNLDYFGIYV*KHMSTQGIQRQKNPDLTVISKGKTGFLYDHI 210
+NY L +F +TNL G+Y ++++ I+ +KN DL +S + D +
Sbjct: 113 YNYALVIFEMTNLKDIGLYNLRNITRGAIRIEKNADLCYLSTVDWSLILDAV 164
>sp|Q8ELT9|ARLY_OCEIH Argininosuccinate lyase (Arginosuccinase) (ASAL)
Length = 459
Score = 28.9 bits (63), Expect = 3.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 275 RQKNPDLTVISKGKTGFLYDHI 210
++KNPD+ + +GKTG +Y H+
Sbjct: 281 QKKNPDVAELVRGKTGRVYGHL 302
>sp|P19751|R1AB_CVMJH Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7180
Score = 28.9 bits (63), Expect = 3.9
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 53 LKNFLQILVIIAWLMASVRRICHWFTVNHS 142
++++ Q + ++AWL A++ C+WF + S
Sbjct: 3531 VQDYTQTVNVVAWLYAAILNRCNWFVQSDS 3560
>sp|Q9PYA3|R1AB_CVM2 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7124
Score = 28.9 bits (63), Expect = 3.9
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 53 LKNFLQILVIIAWLMASVRRICHWFTVNHS 142
++++ Q + ++AWL A++ C+WF + S
Sbjct: 3474 VQDYTQTVNVVAWLYAAILNRCNWFVQSDS 3503
>sp|P24062|IGF1R_RAT Insulin-like growth factor 1 receptor precursor (Insulin-like
growth factor I receptor) [Contains: Insulin-like growth
factor 1 receptor alpha chain; Insulin-like growth
factor 1 receptor beta chain]
Length = 1370
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -3
Query: 362 FNY-LNLFTITNLDYFGIYV*KHMSTQGIQRQKNPDLTVIS 243
+NY L +F +TNL G+Y ++++ I+ +KN DL +S
Sbjct: 113 YNYALVIFEMTNLKDIGLYNLRNITRGAIRIEKNADLCYLS 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,040,609
Number of Sequences: 369166
Number of extensions: 843822
Number of successful extensions: 1871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1870
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)