Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_N14
(901 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40235|HHP1_SCHPO Casein kinase I homolog hhp1 39 0.015
sp|Q6QNM1|KC1_TOXGO Casein kinase I 38 0.044
sp|Q62761|KC1G1_RAT Casein kinase I, gamma 1 isoform (CKI-g... 35 0.37
sp|P40236|HHP2_SCHPO Casein kinase I homolog hhp2 34 0.49
sp|Q6QNL9|KC1_EIMTE Casein kinase I 34 0.64
sp|P42158|KC1D_ARATH Casein kinase I, delta isoform-like (C... 33 1.1
sp|P29295|HRR25_YEAST Casein kinase I homolog HRR25 33 1.1
sp|O74135|CKI3_SCHPO Casein kinase I homolog cki3 33 1.4
sp|Q8IHZ9|KC1_PLAF7 Casein kinase I 33 1.4
sp|O15726|KC1_PLAF4 Casein kinase I 33 1.4
>sp|P40235|HHP1_SCHPO Casein kinase I homolog hhp1
Length = 365
Score = 39.3 bits (90), Expect = 0.015
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 3 HVQSLTYFDPPDYAMLRNLFDECMVRKRVHESDLFDWETASSTNQEEVEIGNTQPYVDGR 182
+ +SL + D PDYA LR LF + R+ +FDW T Q++ Q +
Sbjct: 256 YTRSLRFDDKPDYAYLRKLFRDLFCRQSYEFDYMFDWTLKRKTQQDQQHQQQLQQQLSAT 315
Query: 183 P 185
P
Sbjct: 316 P 316
>sp|Q6QNM1|KC1_TOXGO Casein kinase I
Length = 324
Score = 37.7 bits (86), Expect = 0.044
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 3 HVQSLTYFDPPDYAMLRNLFDECMVRKRVHESDLFDWETASSTNQEEVEIGNTQPYVD 176
+ +SL + D PDYA LR LF + R+ +FDW T +T ++ + Q YV+
Sbjct: 254 YCRSLRFEDRPDYAYLRRLFKDLFFREGYQYDFIFDW-TFINTEKDRASRRSQQVYVE 310
>sp|Q62761|KC1G1_RAT Casein kinase I, gamma 1 isoform (CKI-gamma 1)
Length = 390
Score = 34.7 bits (78), Expect = 0.37
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 3 HVQSLTYFDPPDYAMLRNLFDECMVRKRVHESDLFDW 113
+V+ L +F+ PDY LRNLF + RK +DW
Sbjct: 292 YVRRLDFFEKPDYEYLRNLFTDLFERKGYTFDYAYDW 328
>sp|P40236|HHP2_SCHPO Casein kinase I homolog hhp2
Length = 400
Score = 34.3 bits (77), Expect = 0.49
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 3 HVQSLTYFDPPDYAMLRNLFDECMVRKRVHESDLFDW 113
+ + L++ + P+YA LR LF + ++RK +FDW
Sbjct: 255 YTRQLSFTEKPNYAYLRKLFRDLLIRKGYQYDYVFDW 291
>sp|Q6QNL9|KC1_EIMTE Casein kinase I
Length = 335
Score = 33.9 bits (76), Expect = 0.64
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 3 HVQSLTYFDPPDYAMLRNLFDECMVRKRVHESDLFDWETASSTNQEE 143
+ +SL + D PDY+ LR LF + R+ +FDW + + E
Sbjct: 254 YCRSLRFEDRPDYSYLRRLFKDLFFREGYQYDFIFDWTFLHAERERE 300
>sp|P42158|KC1D_ARATH Casein kinase I, delta isoform-like (CKI-delta)
Length = 450
Score = 33.1 bits (74), Expect = 1.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 3 HVQSLTYFDPPDYAMLRNLFDECMVRKRVHESDLFDW 113
+ +SL + D PDYA L+ +F + +R+ +FDW
Sbjct: 254 YCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDW 290
>sp|P29295|HRR25_YEAST Casein kinase I homolog HRR25
Length = 494
Score = 33.1 bits (74), Expect = 1.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 3 HVQSLTYFDPPDYAMLRNLFDECMVRKRVHESDLFDW 113
+ ++L + + PDY L LF + ++ H LFDW
Sbjct: 254 YCKNLKFDEKPDYLFLARLFKDLSIKLEYHNDHLFDW 290
>sp|O74135|CKI3_SCHPO Casein kinase I homolog cki3
Length = 439
Score = 32.7 bits (73), Expect = 1.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 3 HVQSLTYFDPPDYAMLRNLFDECMVRKRVHESDLFDW 113
+ ++L Y + PDY LR+LFD ++R + +DW
Sbjct: 262 YARNLGYEEAPDYDYLRSLFDSLLLRINETDDGKYDW 298
>sp|Q8IHZ9|KC1_PLAF7 Casein kinase I
Length = 323
Score = 32.7 bits (73), Expect = 1.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 3 HVQSLTYFDPPDYAMLRNLFDECMVRKRVHESDLFDWETASSTNQEE 143
+ +SL + D PDY LR L + +R+ LFDW ++ +++
Sbjct: 254 YCRSLRFEDRPDYTYLRRLLKDLFIREGFTYDFLFDWTCVYASEKDK 300
>sp|O15726|KC1_PLAF4 Casein kinase I
Length = 324
Score = 32.7 bits (73), Expect = 1.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 3 HVQSLTYFDPPDYAMLRNLFDECMVRKRVHESDLFDWETASSTNQEE 143
+ +SL + D PDY LR L + +R+ LFDW ++ +++
Sbjct: 254 YCRSLRFEDRPDYTYLRRLLKDLFIREGFTYDFLFDWTCVYASEKDK 300
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,782,548
Number of Sequences: 369166
Number of extensions: 2315160
Number of successful extensions: 6652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6646
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)