Planarian EST Database


Dr_sW_019_N13

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_019_N13
         (780 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P91924|ARF_DUGJA  ADP-ribosylation factor                      369   e-102
sp|P61210|ARF1_LOCMI  ADP-ribosylation factor 1 (lARF1) >gi|...   333   4e-91
sp|Q4R5P2|ARF1_MACFA  ADP-ribosylation factor 1 >gi|51316981...   333   4e-91
sp|P51643|ARF1_XENLA  ADP-ribosylation factor 1                   333   4e-91
sp|P61206|ARF3_RAT  ADP-ribosylation factor 3 (Liver regener...   332   7e-91
sp|Q10943|ARF1_CAEEL  ADP-ribosylation factor 1                   332   7e-91
sp|P84082|ARF2_RAT  ADP-ribosylation factor 2 >gi|51316991|s...   328   8e-90
sp|P34728|ARF_CRYNE  ADP-ribosylation factor                      325   1e-88
sp|P51824|ARF1_SOLTU  ADP-ribosylation factor 1                   325   1e-88
sp|P36579|ARF1_SCHPO  ADP-ribosylation factor 1                   324   2e-88
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
          Length = 183

 Score =  369 bits (946), Expect = e-102
 Identities = 182/182 (100%), Positives = 182/182 (100%)
 Frame = +2

Query: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 181
           GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61

Query: 182 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 361
           SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 121

Query: 362 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 541
           LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS
Sbjct: 122 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181

Query: 542 KK 547
           KK
Sbjct: 182 KK 183
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
 sp|P61209|ARF1_DROME ADP-ribosylation factor 1
          Length = 182

 Score =  333 bits (853), Expect = 4e-91
 Identities = 163/181 (90%), Positives = 170/181 (93%)
 Frame = +2

Query: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 181
           GN+  +L   LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2   GNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61

Query: 182 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 361
           SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ EAREELMRML EDELRDAVL
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVL 121

Query: 362 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 541
           L+FANKQDLPNAMN AEITDKLGLHSLRNR+WYIQATCATSGDGLYEGLDWLS  LKN +
Sbjct: 122 LIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNAN 181

Query: 542 K 544
           +
Sbjct: 182 R 182
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
 sp|P84079|ARF1_RAT ADP-ribosylation factor 1
 sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
 sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
 sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
          Length = 181

 Score =  333 bits (853), Expect = 4e-91
 Identities = 164/179 (91%), Positives = 170/179 (94%)
 Frame = +2

Query: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 181
           GN+  +L   LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2   GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61

Query: 182 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 361
           SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVL
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 121

Query: 362 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 538
           LVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS  L+N+
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
          Length = 181

 Score =  333 bits (853), Expect = 4e-91
 Identities = 164/179 (91%), Positives = 170/179 (94%)
 Frame = +2

Query: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 181
           GN+  +L   LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2   GNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61

Query: 182 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 361
           SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVL
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 121

Query: 362 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 538
           LVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS  L+N+
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
           LRRG202)
 sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
 sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
 sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
 sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
          Length = 181

 Score =  332 bits (851), Expect = 7e-91
 Identities = 164/179 (91%), Positives = 170/179 (94%)
 Frame = +2

Query: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 181
           GN+  +LL  L GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2   GNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61

Query: 182 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 361
           SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVL
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 121

Query: 362 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 538
           LVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWL+  LKN+
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
          Length = 181

 Score =  332 bits (851), Expect = 7e-91
 Identities = 165/180 (91%), Positives = 168/180 (93%)
 Frame = +2

Query: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 181
           GN+   L   LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2   GNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61

Query: 182 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 361
           SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV EAREELMRML EDELRDAVL
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVL 121

Query: 362 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 541
           LVFANKQDLP AMN AE+TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLS  LKNRS
Sbjct: 122 LVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
 sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
 sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
          Length = 181

 Score =  328 bits (842), Expect = 8e-90
 Identities = 163/179 (91%), Positives = 166/179 (92%)
 Frame = +2

Query: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 181
           GN+   L   LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2   GNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61

Query: 182 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 361
           SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RML EDELRDAVL
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVL 121

Query: 362 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 538
           LVF NKQDLPNAMN AEITDKLGLHSLR R+WYIQATCATSGDGLYEGLDWLS  LKN+
Sbjct: 122 LVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
          Length = 182

 Score =  325 bits (832), Expect = 1e-88
 Identities = 160/180 (88%), Positives = 168/180 (93%)
 Frame = +2

Query: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 181
           G  V+ LL+ LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2   GLSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61

Query: 182 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 361
           SFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRER+ EAREEL RML+EDELRDA+L
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALL 121

Query: 362 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 541
           LVFANKQDLPNAMN AEITDKLGLHSLR RSWYIQA CATSGDGLYEGL+WLS  LK +S
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
          Length = 197

 Score =  325 bits (832), Expect = 1e-88
 Identities = 160/184 (86%), Positives = 168/184 (91%)
 Frame = +2

Query: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 181
           G  ++ L  RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2   GLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61

Query: 182 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 361
           SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVNEAREELMRML EDELRDAVL
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVL 121

Query: 362 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 541
           LVFANKQDLPNAMN AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS  ++N+ 
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQK 181

Query: 542 KK*N 553
              N
Sbjct: 182 ANCN 185
>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1
          Length = 180

 Score =  324 bits (830), Expect = 2e-88
 Identities = 157/179 (87%), Positives = 168/179 (93%)
 Frame = +2

Query: 2   GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 181
           G  ++ L   LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+NI
Sbjct: 2   GLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNI 61

Query: 182 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 361
           SFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRER++EA EEL RMLNEDELRDA+L
Sbjct: 62  SFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALL 121

Query: 362 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 538
           LVFANKQDLPNAMN AEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLST LKN+
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,438,108
Number of Sequences: 369166
Number of extensions: 1459236
Number of successful extensions: 4761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4684
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)