Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_N09
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30397|ROAA_EUGGR Ribosomal operon-associated A protein ... 30 5.7
sp|P38954|IPT1_YEAST Inositolphosphotransferase 1 (Mannosyl... 30 9.8
>sp|P30397|ROAA_EUGGR Ribosomal operon-associated A protein (RoaA)
Length = 516
Score = 30.4 bits (67), Expect = 5.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = -1
Query: 599 FTLEHFLIDYYLKNFLKW---LFNIFLFLCLSFEKNILLNFQRLFIK----GLKIFFNFL 441
F+L +++ + +F ++ +FN F+F L F NILL+ + I+ LK+
Sbjct: 266 FSLRGIILNININSFYRFETFVFNFFIFDFLRFGSNILLHINKKHIQFYKLSLKMIVKMF 325
Query: 440 FKKS 429
KKS
Sbjct: 326 LKKS 329
>sp|P38954|IPT1_YEAST Inositolphosphotransferase 1 (Mannosyl diphosphorylinositol
ceramide synthase)
Length = 527
Score = 29.6 bits (65), Expect = 9.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -1
Query: 572 YYLK----NFLKWLFNIFLFLCLSFEKNILLNFQRLFIKGLKIFFNFL 441
YY+K N L+W NIF + C ++ I F+ +FI F F+
Sbjct: 118 YYIKHVNYNLLEWFANIFHYPCKRKQRPIQKRFRTIFIPFALPLFTFV 165
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,277,886
Number of Sequences: 369166
Number of extensions: 1156732
Number of successful extensions: 2691
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2691
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)