Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_M19
(857 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53488|ARP2_CHICK Actin-like protein 2 (Actin-related pr... 434 e-121
sp|P61160|ARP2_HUMAN Actin-like protein 2 (Actin-related pr... 434 e-121
sp|Q5M7U6|ARP2_RAT Actin-like protein 2 (Actin-related prot... 434 e-121
sp|Q5R4K0|ARP2_PONPY Actin-like protein 2 (Actin-related pr... 431 e-120
sp|P45888|ARP2_DROME Actin-like protein 2 (Actin-related pr... 421 e-117
sp|P53489|ARP2_CAEEL Actin-like protein 2 (Actin-related pr... 414 e-115
sp|Q61JZ2|ARP2_CAEBR Actin-like protein 2 (Actin-related pr... 406 e-113
sp|P53487|ARP2_ACACA Actin-like protein 2 (Actin-related pr... 390 e-108
sp|P32381|ARP2_YEAST Actin-like protein 2 (Actin-related pr... 362 e-100
sp|Q9UUJ1|ARP2_SCHPO Actin-like protein 2 (Actin-related pr... 343 3e-94
>sp|P53488|ARP2_CHICK Actin-like protein 2 (Actin-related protein 2) (Actin-like protein
ACTL)
Length = 394
Score = 434 bits (1116), Expect = e-121
Identities = 205/270 (75%), Positives = 248/270 (91%)
Frame = +1
Query: 1 RERMGELMFETYGFNAMHVAIQATLTLIAQGLMTGVVIDSGDGVTHICPVYEGFSLPHLT 180
RE++ E+MFETY F+ ++VAIQA LTL AQGL+TGVV+DSGDGVTHICPVYEGFSLPHLT
Sbjct: 120 REKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLT 179
Query: 181 RRLDIAGRDITKYLIKLLLLRGYAFNQSADFETIRQLKEKLCYVAYDVEKEEQLSLETTV 360
RRLDIAGRDIT+YLIKLLLLRGYAFN SADFET+R +KEKLCYV Y++E+E++L+LETTV
Sbjct: 180 RRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTV 239
Query: 361 LVENYTLPDGRVIKISGERFQAPEVLFQPHLVDVDSPGIAEMLFNTIQSSDIDTRPEFYK 540
LVE+YTLPDGR+IK+ GERF+APE LFQPHL++V+ G+AE+LFNTIQ++DIDTR EFYK
Sbjct: 240 LVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYK 299
Query: 541 HIVLSGGSTMYPGLPSRLEREVKQLYLERVLKGETGRLAKFKIKIEDPPQRKHIVYLGGS 720
HIVLSGGSTMYPGLPSRLERE+KQLYLERVLKG+ +L+KFKI+IEDPP+RKH+V+LGG+
Sbjct: 300 HIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGA 359
Query: 721 VLANMMKDRQANFWITKQEYAEKGPSIFNK 810
VLA++MKD+ NFW+T+QEY EKG + K
Sbjct: 360 VLADIMKDKD-NFWMTRQEYQEKGVRVLEK 388
>sp|P61160|ARP2_HUMAN Actin-like protein 2 (Actin-related protein 2)
sp|P61161|ARP2_MOUSE Actin-like protein 2 (Actin-related protein 2)
Length = 394
Score = 434 bits (1116), Expect = e-121
Identities = 205/270 (75%), Positives = 248/270 (91%)
Frame = +1
Query: 1 RERMGELMFETYGFNAMHVAIQATLTLIAQGLMTGVVIDSGDGVTHICPVYEGFSLPHLT 180
RE++ E+MFETY F+ ++VAIQA LTL AQGL+TGVV+DSGDGVTHICPVYEGFSLPHLT
Sbjct: 120 REKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLT 179
Query: 181 RRLDIAGRDITKYLIKLLLLRGYAFNQSADFETIRQLKEKLCYVAYDVEKEEQLSLETTV 360
RRLDIAGRDIT+YLIKLLLLRGYAFN SADFET+R +KEKLCYV Y++E+E++L+LETTV
Sbjct: 180 RRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTV 239
Query: 361 LVENYTLPDGRVIKISGERFQAPEVLFQPHLVDVDSPGIAEMLFNTIQSSDIDTRPEFYK 540
LVE+YTLPDGR+IK+ GERF+APE LFQPHL++V+ G+AE+LFNTIQ++DIDTR EFYK
Sbjct: 240 LVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYK 299
Query: 541 HIVLSGGSTMYPGLPSRLEREVKQLYLERVLKGETGRLAKFKIKIEDPPQRKHIVYLGGS 720
HIVLSGGSTMYPGLPSRLERE+KQLYLERVLKG+ +L+KFKI+IEDPP+RKH+V+LGG+
Sbjct: 300 HIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGA 359
Query: 721 VLANMMKDRQANFWITKQEYAEKGPSIFNK 810
VLA++MKD+ NFW+T+QEY EKG + K
Sbjct: 360 VLADIMKDKD-NFWMTRQEYQEKGVRVLEK 388
>sp|Q5M7U6|ARP2_RAT Actin-like protein 2 (Actin-related protein 2)
Length = 394
Score = 434 bits (1116), Expect = e-121
Identities = 205/270 (75%), Positives = 248/270 (91%)
Frame = +1
Query: 1 RERMGELMFETYGFNAMHVAIQATLTLIAQGLMTGVVIDSGDGVTHICPVYEGFSLPHLT 180
RE++ E+MFETY F+ ++VAIQA LTL AQGL+TGVV+DSGDGVTHICPVYEGFSLPHLT
Sbjct: 120 REKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLT 179
Query: 181 RRLDIAGRDITKYLIKLLLLRGYAFNQSADFETIRQLKEKLCYVAYDVEKEEQLSLETTV 360
RRLDIAGRDIT+YLIKLLLLRGYAFN SADFET+R +KEKLCYV Y++E+E++L+LETTV
Sbjct: 180 RRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTV 239
Query: 361 LVENYTLPDGRVIKISGERFQAPEVLFQPHLVDVDSPGIAEMLFNTIQSSDIDTRPEFYK 540
LVE+YTLPDGR+IK+ GERF+APE LFQPHL++V+ G+AE+LFNTIQ++DIDTR EFYK
Sbjct: 240 LVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYK 299
Query: 541 HIVLSGGSTMYPGLPSRLEREVKQLYLERVLKGETGRLAKFKIKIEDPPQRKHIVYLGGS 720
HIVLSGGSTMYPGLPSRLERE+KQLYLERVLKG+ +L+KFKI+IEDPP+RKH+V+LGG+
Sbjct: 300 HIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGA 359
Query: 721 VLANMMKDRQANFWITKQEYAEKGPSIFNK 810
VLA++MKD+ NFW+T+QEY EKG + K
Sbjct: 360 VLADIMKDKD-NFWMTRQEYQEKGVRVLEK 388
>sp|Q5R4K0|ARP2_PONPY Actin-like protein 2 (Actin-related protein 2)
Length = 394
Score = 431 bits (1109), Expect = e-120
Identities = 204/270 (75%), Positives = 247/270 (91%)
Frame = +1
Query: 1 RERMGELMFETYGFNAMHVAIQATLTLIAQGLMTGVVIDSGDGVTHICPVYEGFSLPHLT 180
RE++ E+MFETY F+ ++VAIQA LTL AQGL+TGVV+DSGDGVTHICPVYE FSLPHLT
Sbjct: 120 REKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEDFSLPHLT 179
Query: 181 RRLDIAGRDITKYLIKLLLLRGYAFNQSADFETIRQLKEKLCYVAYDVEKEEQLSLETTV 360
RRLDIAGRDIT+YLIKLLLLRGYAFN SADFET+R +KEKLCYV Y++E+E++L+LETTV
Sbjct: 180 RRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTV 239
Query: 361 LVENYTLPDGRVIKISGERFQAPEVLFQPHLVDVDSPGIAEMLFNTIQSSDIDTRPEFYK 540
LVE+YTLPDGR+IK+ GERF+APE LFQPHL++V+ G+AE+LFNTIQ++DIDTR EFYK
Sbjct: 240 LVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYK 299
Query: 541 HIVLSGGSTMYPGLPSRLEREVKQLYLERVLKGETGRLAKFKIKIEDPPQRKHIVYLGGS 720
HIVLSGGSTMYPGLPSRLERE+KQLYLERVLKG+ +L+KFKI+IEDPP+RKH+V+LGG+
Sbjct: 300 HIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGA 359
Query: 721 VLANMMKDRQANFWITKQEYAEKGPSIFNK 810
VLA++MKD+ NFW+T+QEY EKG + K
Sbjct: 360 VLADIMKDKD-NFWMTRQEYQEKGVRVLEK 388
>sp|P45888|ARP2_DROME Actin-like protein 2 (Actin-related protein 2) (Actin-like protein
14D)
Length = 394
Score = 421 bits (1083), Expect = e-117
Identities = 201/270 (74%), Positives = 241/270 (89%)
Frame = +1
Query: 1 RERMGELMFETYGFNAMHVAIQATLTLIAQGLMTGVVIDSGDGVTHICPVYEGFSLPHLT 180
RE+M E+MFE YGF++ ++AIQA LTL AQGL++GVVIDSGDGVTHICPVYE F+LPHLT
Sbjct: 120 REKMIEVMFEKYGFDSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPHLT 179
Query: 181 RRLDIAGRDITKYLIKLLLLRGYAFNQSADFETIRQLKEKLCYVAYDVEKEEQLSLETTV 360
RRLDIAGRDIT+YLIKLLLLRGYAFN SADFET+R +KEKLCY+ YD+E E++L+LETTV
Sbjct: 180 RRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTV 239
Query: 361 LVENYTLPDGRVIKISGERFQAPEVLFQPHLVDVDSPGIAEMLFNTIQSSDIDTRPEFYK 540
LVE+YTLPDGRVIK+ GERF+APE LFQPHL++V+ PGIAE+ FNTIQ++DID RPE YK
Sbjct: 240 LVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYK 299
Query: 541 HIVLSGGSTMYPGLPSRLEREVKQLYLERVLKGETGRLAKFKIKIEDPPQRKHIVYLGGS 720
HIVLSGGSTMYPGLPSRLERE+KQLYLERVLK +T +LAKFKI+IEDPP+RK +V++GG+
Sbjct: 300 HIVLSGGSTMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIEDPPRRKDMVFIGGA 359
Query: 721 VLANMMKDRQANFWITKQEYAEKGPSIFNK 810
VLA + KDR FW++KQEY E+G + K
Sbjct: 360 VLAEVTKDRD-GFWMSKQEYQEQGLKVLQK 388
>sp|P53489|ARP2_CAEEL Actin-like protein 2 (Actin-related protein 2) (Actin-like protein
C)
Length = 395
Score = 414 bits (1064), Expect = e-115
Identities = 194/264 (73%), Positives = 236/264 (89%)
Frame = +1
Query: 1 RERMGELMFETYGFNAMHVAIQATLTLIAQGLMTGVVIDSGDGVTHICPVYEGFSLPHLT 180
RE+M ++MFE YGFN+++VA+QA LTL AQGL+TGVV+DSGDGVTHICPVYEGF+L HLT
Sbjct: 120 REKMFQVMFEQYGFNSIYVAVQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLT 179
Query: 181 RRLDIAGRDITKYLIKLLLLRGYAFNQSADFETIRQLKEKLCYVAYDVEKEEQLSLETTV 360
RRLDIAGRDITKYLIKLLL RGY FN SADFET+RQ+KEKLCY+AYDVE+EE+L+LETTV
Sbjct: 180 RRLDIAGRDITKYLIKLLLQRGYNFNHSADFETVRQMKEKLCYIAYDVEQEERLALETTV 239
Query: 361 LVENYTLPDGRVIKISGERFQAPEVLFQPHLVDVDSPGIAEMLFNTIQSSDIDTRPEFYK 540
L + YTLPDGRVI++ GERF+APE+LFQPHL++V+ G++E+LF IQ+SDIDTR +FYK
Sbjct: 240 LSQQYTLPDGRVIRLGGERFEAPEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYK 299
Query: 541 HIVLSGGSTMYPGLPSRLEREVKQLYLERVLKGETGRLAKFKIKIEDPPQRKHIVYLGGS 720
HIVLSGG+TMYPGLPSRLE+E+KQLYL+RVL G T KFKI+IE PP RKH+V+LGG+
Sbjct: 300 HIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGA 359
Query: 721 VLANMMKDRQANFWITKQEYAEKG 792
VLAN+MKDR +FW++K+EY E G
Sbjct: 360 VLANLMKDRDQDFWVSKKEYEEGG 383
>sp|Q61JZ2|ARP2_CAEBR Actin-like protein 2 (Actin-related protein 2)
Length = 393
Score = 406 bits (1043), Expect = e-113
Identities = 193/264 (73%), Positives = 234/264 (88%)
Frame = +1
Query: 1 RERMGELMFETYGFNAMHVAIQATLTLIAQGLMTGVVIDSGDGVTHICPVYEGFSLPHLT 180
RE+M ++MFE YGFN+++VA A LTL AQGL+TGVV+DSGDGVTHICPVYEGF+L HLT
Sbjct: 120 REKMFQVMFEQYGFNSIYVA--AVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLT 177
Query: 181 RRLDIAGRDITKYLIKLLLLRGYAFNQSADFETIRQLKEKLCYVAYDVEKEEQLSLETTV 360
RRLDIAGRDITKYLIKLLL RGY FN SADFET+RQ+KEKLCY+AYDVE+EE+L+LETTV
Sbjct: 178 RRLDIAGRDITKYLIKLLLQRGYNFNHSADFETVRQMKEKLCYIAYDVEQEERLALETTV 237
Query: 361 LVENYTLPDGRVIKISGERFQAPEVLFQPHLVDVDSPGIAEMLFNTIQSSDIDTRPEFYK 540
L + YTLPDGRVI++ GERF+APE+LFQPHL++V+ G++E+LF IQ+SDIDTR +FYK
Sbjct: 238 LSQQYTLPDGRVIRLGGERFEAPEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYK 297
Query: 541 HIVLSGGSTMYPGLPSRLEREVKQLYLERVLKGETGRLAKFKIKIEDPPQRKHIVYLGGS 720
HIVLSGG+TMYPGLPSRLE+E+KQLYL+RVL G T KFKI+IE PP RKH+V+LGG+
Sbjct: 298 HIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGA 357
Query: 721 VLANMMKDRQANFWITKQEYAEKG 792
VLAN+MKDR +FW++K+EY E G
Sbjct: 358 VLANLMKDRDQDFWVSKKEYEEGG 381
>sp|P53487|ARP2_ACACA Actin-like protein 2 (Actin-related protein 2)
Length = 388
Score = 390 bits (1002), Expect = e-108
Identities = 185/270 (68%), Positives = 226/270 (83%)
Frame = +1
Query: 1 RERMGELMFETYGFNAMHVAIQATLTLIAQGLMTGVVIDSGDGVTHICPVYEGFSLPHLT 180
RE+M ++MFE YGF A ++AIQA LTL AQGL+TGVV+DSGDGVTHI PVYEGFSLPHLT
Sbjct: 118 REKMVQVMFEKYGFKAAYIAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFSLPHLT 177
Query: 181 RRLDIAGRDITKYLIKLLLLRGYAFNQSADFETIRQLKEKLCYVAYDVEKEEQLSLETTV 360
RRL++AGRD+T+YLIKLLLLRGY FN++ADFET+RQ+KEK CYV YD+E E++L+LETT
Sbjct: 178 RRLNVAGRDVTRYLIKLLLLRGYVFNRTADFETVRQIKEKFCYVGYDLELEKRLALETTT 237
Query: 361 LVENYTLPDGRVIKISGERFQAPEVLFQPHLVDVDSPGIAEMLFNTIQSSDIDTRPEFYK 540
LVE YTLPDGRVI I ERF+APE +F P LVD +S G+ E++F+ I +DIDTR EFY
Sbjct: 238 LVEKYTLPDGRVIPIGAERFEAPECMFNPALVDQESVGVGELVFDCINKADIDTRAEFYN 297
Query: 541 HIVLSGGSTMYPGLPSRLEREVKQLYLERVLKGETGRLAKFKIKIEDPPQRKHIVYLGGS 720
HIVLSGGSTMYPGLPSRLE+E+K+LY ERV KG + KFK +IEDPP+RKH+V+LGG+
Sbjct: 298 HIVLSGGSTMYPGLPSRLEKEIKRLYFERVAKGNKVSMQKFKCRIEDPPRRKHMVFLGGA 357
Query: 721 VLANMMKDRQANFWITKQEYAEKGPSIFNK 810
VLA +MKD+ A FW+ K EY E+GP + K
Sbjct: 358 VLAEIMKDKTA-FWMNKSEYEEQGPRVLRK 386
>sp|P32381|ARP2_YEAST Actin-like protein 2 (Actin-related protein 2) (Actin-like protein
ARP2)
Length = 391
Score = 362 bits (930), Expect = e-100
Identities = 172/270 (63%), Positives = 220/270 (81%)
Frame = +1
Query: 1 RERMGELMFETYGFNAMHVAIQATLTLIAQGLMTGVVIDSGDGVTHICPVYEGFSLPHLT 180
RE+M E+MFE Y F ++VAIQA L L AQGL +GVV+DSGDGVTHI PVYE L HLT
Sbjct: 119 REKMCEVMFEKYDFGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIVPVYESVVLSHLT 178
Query: 181 RRLDIAGRDITKYLIKLLLLRGYAFNQSADFETIRQLKEKLCYVAYDVEKEEQLSLETTV 360
RRLD+AGRD+T++LI LL RGYAFN++ADFET+RQ+KEKLCYV+YD++ + +L+ ETT
Sbjct: 179 RRLDVAGRDVTRHLIDLLSRRGYAFNRTADFETVRQIKEKLCYVSYDLDLDTKLARETTA 238
Query: 361 LVENYTLPDGRVIKISGERFQAPEVLFQPHLVDVDSPGIAEMLFNTIQSSDIDTRPEFYK 540
LVE+Y LPDGR IK+ ERF+APE LFQP LVDV+ PG+ E+LFNT+QS+D+D R YK
Sbjct: 239 LVESYELPDGRTIKVGQERFEAPECLFQPGLVDVEQPGVGELLFNTVQSADVDIRSSLYK 298
Query: 541 HIVLSGGSTMYPGLPSRLEREVKQLYLERVLKGETGRLAKFKIKIEDPPQRKHIVYLGGS 720
IVLSGGS+MYPGLPSRLE+E+KQL+ RVL + RL KFK++IEDPP+RKH+V++GG+
Sbjct: 299 AIVLSGGSSMYPGLPSRLEKELKQLWFSRVLHNDPSRLDKFKVRIEDPPRRKHMVFIGGA 358
Query: 721 VLANMMKDRQANFWITKQEYAEKGPSIFNK 810
VLA++M D+ + W++KQE+ E GPS K
Sbjct: 359 VLASIMADKD-HMWLSKQEWQESGPSAMTK 387
>sp|Q9UUJ1|ARP2_SCHPO Actin-like protein 2 (Actin-related protein 2)
Length = 390
Score = 343 bits (881), Expect = 3e-94
Identities = 164/270 (60%), Positives = 213/270 (78%)
Frame = +1
Query: 1 RERMGELMFETYGFNAMHVAIQATLTLIAQGLMTGVVIDSGDGVTHICPVYEGFSLPHLT 180
RE+M E MFE YGF ++VAIQA L+L AQGL +GVV+DSGDGVTHI PVYE L HL
Sbjct: 116 REKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLV 175
Query: 181 RRLDIAGRDITKYLIKLLLLRGYAFNQSADFETIRQLKEKLCYVAYDVEKEEQLSLETTV 360
RLD+AGRD T+YLI LLL +GYAFN++ADFET+R++KEKLCYV+YD+E + +LS ETTV
Sbjct: 176 GRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTV 235
Query: 361 LVENYTLPDGRVIKISGERFQAPEVLFQPHLVDVDSPGIAEMLFNTIQSSDIDTRPEFYK 540
L+ NYTLPDGRVIK+ ER++ PE LFQPHLV + PG++E +F+TIQ++D+D R Y+
Sbjct: 236 LMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYR 295
Query: 541 HIVLSGGSTMYPGLPSRLEREVKQLYLERVLKGETGRLAKFKIKIEDPPQRKHIVYLGGS 720
IVLSGGS+MY GLPSRLE+E+KQL+ ERVL G+ RL FK+KIED P+R+H V++GG+
Sbjct: 296 AIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGA 355
Query: 721 VLANMMKDRQANFWITKQEYAEKGPSIFNK 810
VLA++M + W++K E+ E G +K
Sbjct: 356 VLADIMAQND-HMWVSKAEWEEYGVRALDK 384
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,662,822
Number of Sequences: 369166
Number of extensions: 1894482
Number of successful extensions: 5847
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5211
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)