Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_M09
(404 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9FK59|IFE3_ARATH Eukaryotic translation initiation fact... 28 7.0
sp|P57679|EVC_HUMAN Ellis-van Creveld syndrome protein (DWF-1) 28 9.1
>sp|Q9FK59|IFE3_ARATH Eukaryotic translation initiation factor 4E type 3 (eIF4E type 3)
(eIF-4E type 3) (mRNA cap-binding protein type 3) (Novel
cap-binding protein) (nCBP)
Length = 221
Score = 28.1 bits (61), Expect = 7.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 73 YRDISEASWQRAQYCNGGRWWFRYGKL 153
++D W+ CNGG+W R+ K+
Sbjct: 103 FKDGIRPLWEDGANCNGGKWIIRFSKV 129
>sp|P57679|EVC_HUMAN Ellis-van Creveld syndrome protein (DWF-1)
Length = 992
Score = 27.7 bits (60), Expect = 9.1
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 8 YQDMETNQMLKHDQSFAENRHDTGTFPRRRGKELNIVMEEDGGSDTE 148
+Q +T +LK+ +S A+ +TG+ RRR +E+ + +++ + E
Sbjct: 57 HQKDDTQNLLKNLESNAQTPSETGSPSRRRKREVQMSKDKEAVDECE 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,211,194
Number of Sequences: 369166
Number of extensions: 687981
Number of successful extensions: 1716
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)