Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_L17
(596 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenas... 228 9e-60
sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenas... 227 2e-59
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 224 2e-58
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 223 3e-58
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 223 4e-58
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 222 6e-58
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 221 1e-57
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 221 1e-57
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 219 3e-57
sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenas... 219 3e-57
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 228 bits (581), Expect = 9e-60
Identities = 112/160 (70%), Positives = 129/160 (80%)
Frame = +2
Query: 8 TRIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRV 187
T +HA+TATQKTVDGPS KLWRDGRGA QNIIP IPELNGKITGMAFRV
Sbjct: 174 TTVHAFTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKITGMAFRV 233
Query: 188 PVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIF 367
P P+VSVVDLTC+L+K AKYD+IKAAIK ASE MKGIL YT+++VVS DF GD +SSIF
Sbjct: 234 PTPNVSVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIF 293
Query: 368 DAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 487
DA AGI L + FVKLV+WYDNE GYS RV+DL+ HM++K+
Sbjct: 294 DADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333
>sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Major larval
surface antigen) (P-37)
Length = 338
Score = 227 bits (578), Expect = 2e-59
Identities = 110/161 (68%), Positives = 125/161 (77%)
Frame = +2
Query: 8 TRIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRV 187
T +H++TATQK VDGPSSKLWRDGRGA QNIIP IP LNGK+TGMAFRV
Sbjct: 177 TTVHSFTATQKVVDGPSSKLWRDGRGAMQNIIPASTGAAKAVGKVIPALNGKLTGMAFRV 236
Query: 188 PVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIF 367
P PDVSVVDLTC+L K A Y+EIKAA+K A+ +KGIL YTE+EVVS DF G +SSIF
Sbjct: 237 PTPDVSVVDLTCRLGKGASYEEIKAAVKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIF 296
Query: 368 DAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKDH 490
DAKAGI L + FVKLV+WYDNE+GYSCRV+DLI HM DH
Sbjct: 297 DAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHKVDH 337
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 224 bits (570), Expect = 2e-58
Identities = 109/160 (68%), Positives = 128/160 (80%)
Frame = +2
Query: 8 TRIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRV 187
T +HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRV
Sbjct: 174 TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 233
Query: 188 PVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIF 367
P P+VSVVDLTC+L+K AKYD+IK +K A++ +KGILAYTE++VVS DF GD +SS F
Sbjct: 234 PTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTF 293
Query: 368 DAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 487
DA AGI L D FVKLV+WYDNEYGYS RV+DL+ HM++K+
Sbjct: 294 DAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 223 bits (568), Expect = 3e-58
Identities = 108/160 (67%), Positives = 127/160 (79%)
Frame = +2
Query: 8 TRIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRV 187
T +HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRV
Sbjct: 174 TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 233
Query: 188 PVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIF 367
P P+VSVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF D +SS F
Sbjct: 234 PTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTF 293
Query: 368 DAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 487
DA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 294 DAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 223 bits (567), Expect = 4e-58
Identities = 108/160 (67%), Positives = 127/160 (79%)
Frame = +2
Query: 8 TRIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRV 187
T +HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRV
Sbjct: 174 TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 233
Query: 188 PVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIF 367
P P+VSVVDLTC+L+K AKYD+IK +K A+E +KGIL YTE++VVS DF GD +SS F
Sbjct: 234 PTPNVSVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTF 293
Query: 368 DAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 487
DA AGI L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 294 DAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 222 bits (565), Expect = 6e-58
Identities = 108/160 (67%), Positives = 126/160 (78%)
Frame = +2
Query: 8 TRIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRV 187
T +HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRV
Sbjct: 163 TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 222
Query: 188 PVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIF 367
P P+VSVVDLTC+L+K AKYDEIK +K ASE +KGIL YTE++VVS DF D +SS F
Sbjct: 223 PTPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTF 282
Query: 368 DAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 487
DA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 283 DAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 221 bits (562), Expect = 1e-57
Identities = 107/160 (66%), Positives = 127/160 (79%)
Frame = +2
Query: 8 TRIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRV 187
T +HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRV
Sbjct: 174 TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 233
Query: 188 PVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIF 367
P P+VSVVDLTC+L+K AKYD+IK +K A++ +KGIL YTE++VVS DF GD +SS F
Sbjct: 234 PTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTF 293
Query: 368 DAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 487
DA AGI L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 294 DAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 221 bits (562), Expect = 1e-57
Identities = 107/160 (66%), Positives = 126/160 (78%)
Frame = +2
Query: 8 TRIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRV 187
T +HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRV
Sbjct: 174 TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 233
Query: 188 PVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIF 367
P P+VSVVDLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS DF D +SS F
Sbjct: 234 PTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTF 293
Query: 368 DAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 487
DA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 294 DAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 219 bits (559), Expect = 3e-57
Identities = 107/160 (66%), Positives = 126/160 (78%)
Frame = +2
Query: 8 TRIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRV 187
T +HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRV
Sbjct: 174 TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 233
Query: 188 PVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIF 367
P P+VSVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF +SS F
Sbjct: 234 PTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTF 293
Query: 368 DAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 487
DA AGI L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 294 DAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 219 bits (559), Expect = 3e-57
Identities = 106/160 (66%), Positives = 126/160 (78%)
Frame = +2
Query: 8 TRIHAYTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRV 187
T +HA TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRV
Sbjct: 174 TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 233
Query: 188 PVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIF 367
P P+VSVVDLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS DF + +SS F
Sbjct: 234 PTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTF 293
Query: 368 DAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 487
DA AGI L D FVKL++WYDNEYGYS RV+DL+ +M++K+
Sbjct: 294 DAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,725,894
Number of Sequences: 369166
Number of extensions: 1186802
Number of successful extensions: 3206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3108
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)