Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_L16
(579 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15185|TEBP_HUMAN Telomerase-binding protein p23 (Hsp90 ... 88 1e-17
sp|Q9R0Q7|TEBP_MOUSE Telomerase-binding protein p23 (Hsp90 ... 88 2e-17
sp|Q90955|TEBP_CHICK Telomerase-binding protein p23 (Hsp90 ... 78 2e-14
sp|Q23280|YOCA_CAEEL Hypothetical protein ZC395.10 in chrom... 75 2e-13
sp|Q9VH95|YC17_DROME Hypothetical protein CG16817 67 2e-11
sp|Q11118|WOS2_SCHPO Protein wos2 (p21) 65 9e-11
sp|Q6ID70|Y3377_ARATH Protein At3g03773 61 2e-09
sp|P28707|SBA1_YEAST Co-chaperone protein SBA1 49 1e-05
sp|O48850|VA725_ARATH Vesicle-associated membrane protein 7... 35 0.13
sp|P07199|CENPB_HUMAN Major centromere autoantigen B (Centr... 30 3.3
>sp|Q15185|TEBP_HUMAN Telomerase-binding protein p23 (Hsp90 co-chaperone) (Progesterone
receptor complex p23)
Length = 160
Score = 88.2 bits (217), Expect = 1e-17
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Frame = +1
Query: 34 WAQRKDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVKLDFHSKVHTDDYKQI 213
W R+DY++I C+ D KD N++ ++ +F+ + G + ++D + +D K
Sbjct: 8 WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHK 67
Query: 214 STDREIVLLIKKSTSG-FWPSLITKRGPKPHWLKTDFNRWKXXXXXXXXXXXXXXXXXXQ 390
TDR I+ ++K SG WP L TK K +WL DFN WK +
Sbjct: 68 RTDRSILCCLRKGESGQSWPRL-TKERAKLNWLSVDFNNWK-DWEDDSDEDMSNFDRFSE 125
Query: 391 MMSQMGEFNDAG-KDAEVAEEDTVDSDDEELPDLK 492
MM+ MG D + + A++D+ DSDDE++PDL+
Sbjct: 126 MMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
>sp|Q9R0Q7|TEBP_MOUSE Telomerase-binding protein p23 (Hsp90 co-chaperone) (Progesterone
receptor complex p23) (Sid 3177)
Length = 160
Score = 87.8 bits (216), Expect = 2e-17
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Frame = +1
Query: 34 WAQRKDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVKLDFHSKVHTDDYKQI 213
W R+DY++I C+ D KD N++ ++ +F+ + G + ++D + +D K
Sbjct: 8 WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHK 67
Query: 214 STDREIVLLIKKSTSG-FWPSLITKRGPKPHWLKTDFNRWKXXXXXXXXXXXXXXXXXXQ 390
TDR I+ ++K SG WP L TK K +WL DFN WK +
Sbjct: 68 RTDRSILCCLRKGESGQSWPRL-TKERAKLNWLSVDFNNWK-DWEDDSDEDMSNFDRFSE 125
Query: 391 MMSQMGEFNDAG-KDAEVAEEDTVDSDDEELPDLK 492
MM MG D + + A++D+ DSDDE++PDL+
Sbjct: 126 MMDHMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
>sp|Q90955|TEBP_CHICK Telomerase-binding protein p23 (Hsp90 co-chaperone) (Progesterone
receptor complex p23)
Length = 146
Score = 77.8 bits (190), Expect = 2e-14
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
Frame = +1
Query: 55 LYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVKLDFHSKVHTDDYKQISTDREIV 234
++I C+ D KD N++ ++ +F+ + G + ++D + + ++ K TDR I+
Sbjct: 1 VFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFNNIDPNESKHKRTDRSIL 60
Query: 235 LLIKKSTSG-FWPSLITKRGPKPHWLKTDFNRWKXXXXXXXXXXXXXXXXXXQMMSQMGE 411
++K SG WP L TK K +WL DFN WK +MM+ MG
Sbjct: 61 CCLRKGESGQAWPRL-TKERAKLNWLSVDFNNWK-DWEDDSDEDMSNFDRFSEMMNNMGG 118
Query: 412 FNDAG-KDAEVAEEDTVDSDDEELPDLK 492
+D + + A++D+ DSDDE++PDL+
Sbjct: 119 DDDVDLPEVDGADDDSPDSDDEKMPDLE 146
>sp|Q23280|YOCA_CAEEL Hypothetical protein ZC395.10 in chromosome III
Length = 175
Score = 74.7 bits (182), Expect = 2e-13
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Frame = +1
Query: 22 PTVLWAQRKDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVKLDFHSKVHTDD 201
PTVLWAQR+ +Y+TI + + K + + + + F G S Y L+F ++
Sbjct: 5 PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDPAS 62
Query: 202 YKQI-STDREIVLLIKKSTSGFWPSLITKRGPKPHWLKTDFNRWK--------XXXXXXX 354
K S+ R + + ++K T +WP L+ +G K HWLK DF +WK
Sbjct: 63 VKHTGSSTRVVEITVQKKTPAWWPRLLQNKG-KVHWLKVDFGKWKDEDEDDEAEDAGAGI 121
Query: 355 XXXXXXXXXXXQMMSQMGEFNDAGKDAEVAEEDTVDSDDEELPDLKE 495
Q MSQMG G D E+ D +D+++PDL++
Sbjct: 122 GGGMANGFDLNQYMSQMG--GAGGADFGGLED---DEEDDDMPDLED 163
>sp|Q9VH95|YC17_DROME Hypothetical protein CG16817
Length = 184
Score = 67.4 bits (163), Expect = 2e-11
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 2/163 (1%)
Frame = +1
Query: 13 ILHPTVLWAQRKDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPP-KPYAVKLDFHSKV 189
++ P V WAQR D +Y+ I + + KD + E +F+F G++ + P K Y V L+F +V
Sbjct: 7 LIPPPVSWAQRNDLIYVIIDV-ECKDIEHKVTEKTFTFKGVNVLDPSKKYEVTLNFLHEV 65
Query: 190 HTDDYKQISTDREIVLLIKKSTSG-FWPSLITKRGPKPHWLKTDFNRWKXXXXXXXXXXX 366
+ + R + I K +G +W SL T + K H+LK +F +W+
Sbjct: 66 DPEKVTSKNIGRCLEFTIPKKAAGPYWSSLTTDK-TKLHFLKANFAKWRDESDDEEGDQK 124
Query: 367 XXXXXXXQMMSQMGEFNDAGKDAEVAEEDTVDSDDEELPDLKE 495
+ S G++N+ D V +E+ + D+ +P L +
Sbjct: 125 DNSMFGNFLNSPGGDWNNKFDDFNVDDEE--EDSDDNIPSLSQ 165
>sp|Q11118|WOS2_SCHPO Protein wos2 (p21)
Length = 186
Score = 65.5 bits (158), Expect = 9e-11
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Frame = +1
Query: 22 PTVLWAQR-------KDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVKLDFH 180
P VLWAQR K+ +Y+T+ I D D +++ + + SG YAV++DF
Sbjct: 8 PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGANAH-YAVQIDFF 66
Query: 181 SKVHTDDYKQISTDREI--VLLIKKSTSGFWPSLITKRGPKPHWLKTDFNRW 330
+ + K T R I VL K+ FWP L TK + HWL+TDF+RW
Sbjct: 67 KDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRL-TKEKLRLHWLRTDFDRW 117
>sp|Q6ID70|Y3377_ARATH Protein At3g03773
Length = 150
Score = 60.8 bits (146), Expect = 2e-09
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +1
Query: 19 HPTVLWAQRKDYLYITICIGDIKDKNMSIK-EDSFSFNGISGVPPKPYAVKLDFHSKVHT 195
+P VLWAQR D +Y+T+ + D KD ++ + + FSF+ + G + + L+ + K+ T
Sbjct: 4 NPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKIMT 62
Query: 196 DDYKQISTDREIVLLIKKSTSGFWPSLITKRGPKPHWLKTDFNRW 330
+ K + R I+ I+K +W L+ ++K D+N+W
Sbjct: 63 EYRKNVGL-RNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKW 106
>sp|P28707|SBA1_YEAST Co-chaperone protein SBA1
Length = 216
Score = 48.5 bits (114), Expect = 1e-05
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 19/126 (15%)
Frame = +1
Query: 10 EILHPTVLWAQR-------KDYLYITICIGDIKDKNMSIKEDSFSFNGISGVPPKPYAVK 168
++++P V WAQR ++Y+ IT+ I D ++IK S KP+
Sbjct: 4 KVINPQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKPSYIELKAQS----KPHVGD 59
Query: 169 LDFHS-KVHTDDYKQISTDREI----------VLLIKKST-SGFWPSLITKRGPKPHWLK 312
+ H ++H D YK+I ++ + + L KK S +WP L TK K ++K
Sbjct: 60 ENVHHYQLHIDLYKEIIPEKTMHKVANGQHYFLKLYKKDLESEYWPRL-TKEKVKYPYIK 118
Query: 313 TDFNRW 330
TDF++W
Sbjct: 119 TDFDKW 124
>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 (AtVAMP725)
Length = 285
Score = 35.0 bits (79), Expect = 0.13
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 162 SIGLWWNSRNAIK*KGIFFNTHVFILNITNTYGDIQIIFS 43
S+ LWWNS+N I+ FF F+L +T T G +I+S
Sbjct: 39 SLSLWWNSKNRIRGCVWFF----FLLRVTRTMGQQNLIYS 74
>sp|P07199|CENPB_HUMAN Major centromere autoantigen B (Centromere protein B) (CENP-B)
Length = 599
Score = 30.4 bits (67), Expect = 3.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 406 GEFNDAGKDAEVAEEDTVDSDDEELPD 486
GE + G++ EV EE VDSD+EE D
Sbjct: 437 GEGEELGEEEEVEEEGDVDSDEEEEED 463
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,670,835
Number of Sequences: 369166
Number of extensions: 988782
Number of successful extensions: 2464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2444
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)