Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_L14
(550 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UJZ1|STML2_HUMAN Stomatin-like protein 2 (SLP-2) (EPB7... 142 5e-34
sp|Q99JB2|STML2_MOUSE Stomatin-like protein 2 (SLP-2) 140 2e-33
sp|P0AA53|YBBK_ECOLI Hypothetical protein ybbK 78 2e-14
sp|O26788|Y692_METTH Hypothetical protein MTH692 70 3e-12
sp|P72655|Y1128_SYNY3 Hypothetical protein slr1128 70 4e-12
sp|P63694|Y1524_MYCBO Hypothetical protein Mb1524 >gi|54042... 66 5e-11
sp|O28852|Y1420_ARCFU Hypothetical protein AF1420 54 3e-07
sp|O59180|Y1511_PYRHO Hypothetical protein PH1511 52 7e-07
sp|Q9V0Y1|Y658_PYRAB Hypothetical protein PYRAB06580 52 1e-06
sp|P27105|STOM_HUMAN Erythrocyte band 7 integral membrane p... 49 6e-06
>sp|Q9UJZ1|STML2_HUMAN Stomatin-like protein 2 (SLP-2) (EPB72-like 2)
Length = 356
Score = 142 bits (358), Expect = 5e-34
Identities = 75/167 (44%), Positives = 106/167 (63%)
Frame = +1
Query: 1 ASDPWGIDCLRYEIRDIELPEKIQEAMQMQVAAERQKRAIVLESEGLREAEINKAEAKKR 180
A+D WGI CLRYEI+DI +P +++E+MQMQV AER+KRA VLESEG RE+ IN AE KK+
Sbjct: 164 AADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVAEGKKQ 223
Query: 181 KCVLESEGVKIENINRASGXXXXXXXXXXXXXXXXXXXXMSISQNYGENAVQLTVAEKYI 360
+L SE K E IN+A+G +++Q+ G+ A LTVAE+Y+
Sbjct: 224 AQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAAALTQHNGDAAASLTVAEQYV 283
Query: 361 EQFGKIAGTNNTLMMSSPVNDVAAMVAQALTIYKSIDKVQHRIPNEP 501
F K+A +NT+++ S DV +MVAQA+ +Y ++ K +P P
Sbjct: 284 SAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAP--VPGTP 328
>sp|Q99JB2|STML2_MOUSE Stomatin-like protein 2 (SLP-2)
Length = 353
Score = 140 bits (354), Expect = 2e-33
Identities = 73/158 (46%), Positives = 104/158 (65%)
Frame = +1
Query: 1 ASDPWGIDCLRYEIRDIELPEKIQEAMQMQVAAERQKRAIVLESEGLREAEINKAEAKKR 180
A+D WGI CLRYEI+DI +P +++E+MQMQV AER+KRA VLESEG RE+ IN AE KK+
Sbjct: 164 AADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVAEGKKQ 223
Query: 181 KCVLESEGVKIENINRASGXXXXXXXXXXXXXXXXXXXXMSISQNYGENAVQLTVAEKYI 360
+L SE K E IN+A+G +++Q+ G+ A LTVAE+Y+
Sbjct: 224 AQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAGALTQHNGDAAASLTVAEQYV 283
Query: 361 EQFGKIAGTNNTLMMSSPVNDVAAMVAQALTIYKSIDK 474
F K+A +NT+++ S +DV +MVAQA+ +Y ++ K
Sbjct: 284 SAFSKLAKDSNTVLLPSNPSDVTSMVAQAMGVYGALTK 321
>sp|P0AA53|YBBK_ECOLI Hypothetical protein ybbK
Length = 305
Score = 77.8 bits (190), Expect = 2e-14
Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 1 ASDPWGIDCLRYEIRDIELPEKIQEAMQMQVAAERQKRAIVLESEGLREAEINKAEAKKR 180
A++PWGI R EIRD+ P ++ +M Q+ AER KRA +LE+EG+R+AEI KAE +K+
Sbjct: 146 ATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQ 205
Query: 181 KCVLESEGVKIENINRASGXXXXXXXXXXXXXXXXXXXXMSISQNYGE-NAVQLTVAEKY 357
+L++EG R S +S + G+ AV VA+KY
Sbjct: 206 SQILKAEG------ERQSAFLQAEARERSAEAEARATKMVSEAIASGDIQAVNYFVAQKY 259
Query: 358 IEQFGKIAGTNNTLMMSSPVNDVAAM 435
E +I ++N+ ++ P+ + M
Sbjct: 260 TEALQQIGSSSNSKVVMMPLEASSLM 285
>sp|O26788|Y692_METTH Hypothetical protein MTH692
Length = 318
Score = 70.5 bits (171), Expect = 3e-12
Identities = 37/78 (47%), Positives = 52/78 (66%)
Frame = +1
Query: 1 ASDPWGIDCLRYEIRDIELPEKIQEAMQMQVAAERQKRAIVLESEGLREAEINKAEAKKR 180
A+D WG +R EI+ IE P I EAM Q+ AER KRA +LE+EG +++EI +AE K+
Sbjct: 144 ATDKWGTRVVRVEIQRIEPPGDIVEAMSKQMKAERMKRAAILEAEGYKQSEIKRAEGDKQ 203
Query: 181 KCVLESEGVKIENINRAS 234
+LE+EG K E I + +
Sbjct: 204 AAILEAEG-KAEAIKKVA 220
>sp|P72655|Y1128_SYNY3 Hypothetical protein slr1128
Length = 321
Score = 69.7 bits (169), Expect = 4e-12
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +1
Query: 1 ASDPWGIDCLRYEIRDIELPEKIQEAMQMQVAAERQKRAIVLESEGLREAEINKAEAKKR 180
++DPWG+ R E+RDI + + ++M++Q+ AER+KRA +L SEG R++ IN A+ +
Sbjct: 146 STDPWGVKVTRVELRDIMPSKAVLDSMELQMTAERKKRAAILTSEGQRDSAINSAQGDAQ 205
Query: 181 KCVLESEGVKIENINRASGXXXXXXXXXXXXXXXXXXXXMSI-SQNYGENAVQLTVAEKY 357
VLE+E K I A + S N+ A+Q +A++Y
Sbjct: 206 ARVLEAEAKKKAAILNAEAEQQKKVLEAKATAEALSILTEKLSSDNHAREALQFLLAQQY 265
Query: 358 IEQFGKIAGTNNTLMM 405
+ I ++++ +M
Sbjct: 266 LNMGTTIGSSDSSKVM 281
>sp|P63694|Y1524_MYCBO Hypothetical protein Mb1524
sp|P63693|Y1488_MYCTU Hypothetical protein Rv1488/MT1533.2
Length = 381
Score = 66.2 bits (160), Expect = 5e-11
Identities = 31/70 (44%), Positives = 48/70 (68%)
Frame = +1
Query: 1 ASDPWGIDCLRYEIRDIELPEKIQEAMQMQVAAERQKRAIVLESEGLREAEINKAEAKKR 180
A+ WG+ R E+R I+ P IQ +M+ Q+ A+R+KRA++L +EG REA I +AE +K+
Sbjct: 152 ATGRWGLRVARVELRSIDPPPSIQASMEKQMKADREKRAMILTAEGTREAAIKQAEGQKQ 211
Query: 181 KCVLESEGVK 210
+L +EG K
Sbjct: 212 AQILAAEGAK 221
>sp|O28852|Y1420_ARCFU Hypothetical protein AF1420
Length = 249
Score = 53.5 bits (127), Expect = 3e-07
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = +1
Query: 4 SDPWGIDCLRYEIRDIELPEKIQEAMQMQVAAERQKRAIVLESEGLREAEINKAEAKKRK 183
++PWGI EI+D+ELPE+++ M MQ AER++R+ ++ +EG +A + EA
Sbjct: 146 TNPWGIKVTAVEIKDVELPEEMRRIMAMQAEAERERRSKIIRAEGEYQAAMKLREA--AD 203
Query: 184 CVLESEG 204
+ +SEG
Sbjct: 204 VLAQSEG 210
>sp|O59180|Y1511_PYRHO Hypothetical protein PH1511
Length = 266
Score = 52.4 bits (124), Expect = 7e-07
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +1
Query: 1 ASDPWGIDCLRYEIRDIELPEKIQEAMQMQVAAERQKRAIVLESEGLREAEINKAEA 171
A+DPWGI EI+D+ELP +Q+AM Q AER++RA + +E R+A EA
Sbjct: 150 ATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREA 206
>sp|Q9V0Y1|Y658_PYRAB Hypothetical protein PYRAB06580
Length = 268
Score = 52.0 bits (123), Expect = 1e-06
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +1
Query: 1 ASDPWGIDCLRYEIRDIELPEKIQEAMQMQVAAERQKRAIVLESEGLREAEINKAEA 171
A+DPWGI EI+D+ELP +Q AM Q AER++RA + +E R+A EA
Sbjct: 150 ATDPWGIKVTAVEIKDVELPAGMQRAMAKQAEAERERRARITLAEAERQAAEKLREA 206
>sp|P27105|STOM_HUMAN Erythrocyte band 7 integral membrane protein (Stomatin) (Protein
7.2b)
Length = 288
Score = 49.3 bits (116), Expect = 6e-06
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +1
Query: 1 ASDPWGIDCLRYEIRDIELPEKIQEAMQMQVAAERQKRAIVLESEGLREAEINKAEAKKR 180
A+D WGI R EI+D++LP ++Q AM + A R+ RA V+ +EG E+N + A K
Sbjct: 181 ATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEG----EMNASRALKE 236
Query: 181 KCVLESE 201
++ +E
Sbjct: 237 ASMVITE 243
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,159,952
Number of Sequences: 369166
Number of extensions: 795384
Number of successful extensions: 2100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2088
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)