Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_L11
(858 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07688|CATB_BOVIN Cathepsin B precursor [Contains: Cathe... 382 e-106
sp|P00787|CATB_RAT Cathepsin B precursor (Cathepsin B1) (RS... 372 e-103
sp|P10605|CATB_MOUSE Cathepsin B precursor (Cathepsin B1) [... 371 e-102
sp|P07858|CATB_HUMAN Cathepsin B precursor (Cathepsin B1) (... 370 e-102
sp|P43233|CATB_CHICK Cathepsin B precursor (Cathepsin B1) [... 351 1e-96
sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase p... 347 2e-95
sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase p... 333 4e-91
sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6... 289 6e-78
sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5... 280 5e-75
sp|P25807|CPR1_CAEEL Gut-specific cysteine proteinase precu... 276 7e-74
>sp|P07688|CATB_BOVIN Cathepsin B precursor [Contains: Cathepsin B light chain; Cathepsin
B heavy chain]
Length = 335
Score = 382 bits (981), Expect = e-106
Identities = 178/287 (62%), Positives = 211/287 (73%), Gaps = 1/287 (0%)
Frame = +1
Query: 1 PLSFDLINYVNYVAQTTWKAGPTTRFQSISDIRKVLG-VMKDPNNFKLPKRKPLLNRVRL 177
PLS +L+N+VN TTWKAG +S ++K+ G ++ P KLP+R V L
Sbjct: 25 PLSDELVNFVNK-QNTTWKAGHNFYNVDLSYVKKLCGAILGGP---KLPQRDAFAADVVL 80
Query: 178 PTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLLT 357
P +FDAR QWP C +I EIRDQ +CGSCWAFGAVEAI+DR CIHSNG +SAED+LT
Sbjct: 81 PESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLT 140
Query: 358 CCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPNCTG 537
CCG CGDGCNGGFPSGAW++W GLV+GG Y +H+GC+ Y+ P C HHV G P CTG
Sbjct: 141 CCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTG 200
Query: 538 EFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADFP 717
E TPKC K C+ GYS +Y EDK +G SSYSV +N++ IM EI NGPVE AFSVY+DF
Sbjct: 201 EGDTPKCNKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFL 260
Query: 718 NYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDN 858
YKSGVYQHVSG ++GGHAI+ILGWGVEN TPYWLV NSWN WGDN
Sbjct: 261 LYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDN 307
>sp|P00787|CATB_RAT Cathepsin B precursor (Cathepsin B1) (RSG-2) [Contains: Cathepsin B
light chain; Cathepsin B heavy chain]
Length = 339
Score = 372 bits (956), Expect = e-103
Identities = 169/287 (58%), Positives = 208/287 (72%), Gaps = 1/287 (0%)
Frame = +1
Query: 1 PLSFDLINYVNYVAQTTWKAGPTTRFQSISDIRKVLG-VMKDPNNFKLPKRKPLLNRVRL 177
PLS D+INY+N TTW+AG IS ++K+ G V+ PN LP+R + L
Sbjct: 25 PLSDDMINYINK-QNTTWQAGRNFYNVDISYLKKLCGTVLGGPN---LPERVGFSEDINL 80
Query: 178 PTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLLT 357
P +FDAR QW C +I +IRDQ +CGSCWAFGAVEA++DR CIH+NG +SAEDLLT
Sbjct: 81 PESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLT 140
Query: 358 CCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPNCTG 537
CCG +CGDGCNGG+PSGAW++W GLV+GG Y +H+GC Y P C HHV G P CTG
Sbjct: 141 CCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRPPCTG 200
Query: 538 EFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADFP 717
E TPKC K C+AGYS +Y EDK YG +SYSV +++ IM EI NGPVE AF+V++DF
Sbjct: 201 EGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFL 260
Query: 718 NYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDN 858
YKSGVY+H +G ++GGHAI+ILGWG+EN PYWLVANSWN WGDN
Sbjct: 261 TYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNVDWGDN 307
>sp|P10605|CATB_MOUSE Cathepsin B precursor (Cathepsin B1) [Contains: Cathepsin B light
chain; Cathepsin B heavy chain]
Length = 339
Score = 371 bits (952), Expect = e-102
Identities = 172/287 (59%), Positives = 207/287 (72%), Gaps = 1/287 (0%)
Frame = +1
Query: 1 PLSFDLINYVNYVAQTTWKAGPTTRFQSISDIRKVLG-VMKDPNNFKLPKRKPLLNRVRL 177
PLS DLINY+N TTW+AG IS ++K+ G V+ P KLP R + L
Sbjct: 25 PLSDDLINYINK-QNTTWQAGRNFYNVDISYLKKLCGTVLGGP---KLPGRVAFGEDIDL 80
Query: 178 PTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLLT 357
P TFDAR QW C +IG+IRDQ +CGSCWAFGAVEAI+DR CIH+NG +SAEDLLT
Sbjct: 81 PETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLT 140
Query: 358 CCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPNCTG 537
CCG +CGDGCNGG+PSGAW +W GLV+GG Y +H+GC Y P C HHV G P CTG
Sbjct: 141 CCGIQCGDGCNGGYPSGAWSFWTKKGLVSGGVYNSHVGCLPYTIPPCEHHVNGSRPPCTG 200
Query: 538 EFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADFP 717
E TP+C K+C+AGYS +Y EDK +G +SYSV ++ + IM EI NGPVE AF+V++DF
Sbjct: 201 EGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMAEIYKNGPVEGAFTVFSDFL 260
Query: 718 NYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDN 858
YKSGVY+H +G M+GGHAI+ILGWGVEN PYWL ANSWN WGDN
Sbjct: 261 TYKSGVYKHEAGDMMGGHAIRILGWGVENGVPYWLAANSWNLDWGDN 307
>sp|P07858|CATB_HUMAN Cathepsin B precursor (Cathepsin B1) (APP secretase) (APPS)
[Contains: Cathepsin B light chain; Cathepsin B heavy
chain]
Length = 339
Score = 370 bits (951), Expect = e-102
Identities = 170/286 (59%), Positives = 209/286 (73%)
Frame = +1
Query: 1 PLSFDLINYVNYVAQTTWKAGPTTRFQSISDIRKVLGVMKDPNNFKLPKRKPLLNRVRLP 180
PLS +L+NYVN TTW+AG +S ++++ G K P+R ++LP
Sbjct: 25 PLSDELVNYVNK-RNTTWQAGHNFYNVDMSYLKRLCGTFL--GGPKPPQRVMFTEDLKLP 81
Query: 181 TTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLLTC 360
+FDAR QWP+C +I EIRDQ +CGSCWAFGAVEAI+DR CIH+N + +SAEDLLTC
Sbjct: 82 ASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTC 141
Query: 361 CGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPNCTGE 540
CG CGDGCNGG+P+ AW++W GLV+GG Y +H+GC+ Y+ P C HHV G P CTGE
Sbjct: 142 CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGE 201
Query: 541 FPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADFPN 720
TPKC K C+ GYS TY +DK YG +SYSV ++++ IM EI NGPVE AFSVY+DF
Sbjct: 202 GDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLL 261
Query: 721 YKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDN 858
YKSGVYQHV+G M+GGHAI+ILGWGVEN TPYWLVANSWN WGDN
Sbjct: 262 YKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDN 307
>sp|P43233|CATB_CHICK Cathepsin B precursor (Cathepsin B1) [Contains: Cathepsin B light
chain; Cathepsin B heavy chain]
Length = 340
Score = 351 bits (901), Expect = 1e-96
Identities = 163/285 (57%), Positives = 197/285 (69%), Gaps = 1/285 (0%)
Frame = +1
Query: 1 PLSFDLINYVNYVAQTTWKAGPTTRFQSISDIRKVLGVMKDPNNFKLPKRKPLLNRVRLP 180
PLS DL+N++N + TT +AG +S ++K+ G K P+R + LP
Sbjct: 25 PLSSDLVNHINKL-NTTGRAGHNFHNTDMSYVKKLCGTFL--GGPKAPERVDFAEDMDLP 81
Query: 181 TTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLLTC 360
TFD R QWP C +I EIRDQ +CGSCWAFGAVEAI+DR C+H+N + +SAEDLL+C
Sbjct: 82 DTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSC 141
Query: 361 CGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPNCTGE 540
CGF CG GCNGG+PSGAW YW GLV+GG Y +H+GC+ Y P C HHV G P CTGE
Sbjct: 142 CGFECGMGCNGGYPSGAWRYWTERGLVSGGLYDSHVGCRAYTIPPCEHHVNGSRPPCTGE 201
Query: 541 -FPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADFP 717
TP+C + C+ GYS +Y EDK YG +SY V +++ IM EI NGPVE AF VY DF
Sbjct: 202 GGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMAEIYKNGPVEGAFIVYEDFL 261
Query: 718 NYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWG 852
YKSGVYQHVSG +GGHAI+ILGWGVEN TPYWL ANSWN WG
Sbjct: 262 MYKSGVYQHVSGEQVGGHAIRILGWGVENGTPYWLAANSWNTDWG 306
>sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase precursor (Antigen Sj31)
Length = 342
Score = 347 bits (890), Expect = 2e-95
Identities = 157/290 (54%), Positives = 201/290 (69%), Gaps = 5/290 (1%)
Frame = +1
Query: 1 PLSFDLINYVNYVAQTTWKAGPTTRFQSISDIRKVLGVMKDPNNFKLPKRKPLLNR---- 168
PLS ++I+++N WKA + RF S+ D R ++G K+ K R+P ++
Sbjct: 29 PLSDEMISFINEHPDAGWKADKSDRFHSLDDARILMGARKEDAEMKR-NRRPTVDHHDLN 87
Query: 169 VRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAED 348
V +P+ FD+R +WP CKSI +IRDQS CGSCWAFGAVEA+TDR CI S G Q+ +SA D
Sbjct: 88 VEIPSQFDSRKKWPHCKSISQIRDQSRCGSCWAFGAVEAMTDRICIQSGGGQSAELSALD 147
Query: 349 LLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPN 528
L++CC CGDGC GGFP AW YWV G+VTGG H GCQ Y FPKC HH G YP
Sbjct: 148 LISCCK-DCGDGCQGGFPGVAWDYWVKRGIVTGGSKENHTGCQPYPFPKCEHHTKGKYPA 206
Query: 529 C-TGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVY 705
C T + TP+CK+ CQ GY Y +DK YG SY+V +N++ I ++I+ GPVEAAF VY
Sbjct: 207 CGTKIYKTPQCKQTCQKGYKTPYEQDKHYGDESYNVQNNEKVIQRDIMMYGPVEAAFDVY 266
Query: 706 ADFPNYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGD 855
DF NYKSG+Y+HV+G ++GGHAI+I+GWGVE TPYWL+ANSWN WG+
Sbjct: 267 EDFLNYKSGIYRHVTGSIVGGHAIRIIGWGVEKRTPYWLIANSWNEDWGE 316
>sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase precursor (Antigen Sm31)
Length = 340
Score = 333 bits (854), Expect = 4e-91
Identities = 152/291 (52%), Positives = 199/291 (68%), Gaps = 5/291 (1%)
Frame = +1
Query: 1 PLSFDLINYVNYVAQTTWKAGPTTRFQSISDIRKVLGVMKDPNNFKLPKRKPLLNR---- 168
PLS D+I+Y+N W+A + RF S+ D R +G ++ + + KR+P ++
Sbjct: 28 PLSDDIISYINEHPNAGWRAEKSNRFHSLDDARIQMGARREEPDLRR-KRRPTVDHNDWN 86
Query: 169 VRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAED 348
V +P+ FD+R +WP CKSI IRDQS CGSCW+FGAVEA++DR CI S G Q +SA D
Sbjct: 87 VEIPSNFDSRKKWPGCKSIATIRDQSRCGSCWSFGAVEAMSDRSCIQSGGKQNVELSAVD 146
Query: 349 LLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPN 528
LLTCC CG GC GG AW YWV +G+VT H GC+ Y FPKC HH G YP
Sbjct: 147 LLTCCE-SCGLGCEGGILGPAWDYWVKEGIVTASSKENHTGCEPYPFPKCEHHTKGKYPP 205
Query: 529 CTGE-FPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVY 705
C + + TP+CK+ CQ Y Y +DK GKSSY+V ++++AI +EI+ GPVEA+F+VY
Sbjct: 206 CGSKIYNTPRCKQTCQRKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEASFTVY 265
Query: 706 ADFPNYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDN 858
DF NYKSG+Y+H++G LGGHAI+I+GWGVEN TPYWL+ANSWN WG+N
Sbjct: 266 EDFLNYKSGIYKHITGEALGGHAIRIIGWGVENKTPYWLIANSWNEDWGEN 316
>sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6 precursor (Cysteine
protease-related 6)
Length = 379
Score = 289 bits (740), Expect = 6e-78
Identities = 145/294 (49%), Positives = 191/294 (64%), Gaps = 12/294 (4%)
Frame = +1
Query: 13 DLINYVNYVAQTTWKAGPTTRFQSI-SDIRKVLGVMKDPNNFKLP-KRKPLLNRVR---- 174
DLI+YVN Q W A RF S+ + K + N+ +L K K L++ +
Sbjct: 45 DLIDYVNE-NQNLWTAKKQRRFSSVYGENDKAKWGLMGVNHVRLSVKGKQHLSKTKDLDL 103
Query: 175 -LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDL 351
+P +FD+R WPKC SI IRDQS+CGSCWAFGAVEA++DR CI S+G +SA+DL
Sbjct: 104 DIPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDL 163
Query: 352 LTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHV----IGP 519
L+CC CG GCNGG P AW YWV DG+VTG Y A+ GC+ Y FP C HH P
Sbjct: 164 LSCCK-SCGFGCNGGDPLAAWRYWVKDGIVTGSNYTANNGCKPYPFPPCEHHSKKTHFDP 222
Query: 520 YPNCTGEFPTPKCKKACQAGYS-KTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAF 696
P+ +PTPKC+K C + Y+ KTY+EDK +G S+Y V + +AI +E++T+GP+E AF
Sbjct: 223 CPHDL--YPTPKCEKKCVSDYTDKTYSEDKFFGASAYGVKDDVEAIQKELMTHGPLEIAF 280
Query: 697 SVYADFPNYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDN 858
VY DF NY GVY H G + GGHA+K++GWG+++ PYW VANSWN WG++
Sbjct: 281 EVYEDFLNYDGGVYVHTGGKLGGGHAVKLIGWGIDDGIPYWTVANSWNTDWGED 334
>sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5 precursor (Cysteine
protease-related 5)
Length = 344
Score = 280 bits (715), Expect = 5e-75
Identities = 141/289 (48%), Positives = 177/289 (61%), Gaps = 9/289 (3%)
Frame = +1
Query: 16 LINYVNYVAQTTWKAGPTTRFQSISDIRKVLGVMKDPNNFKLPKRKPLLNRV---RLPTT 186
LI+YVN AQ W AG + K+ + D K + ++ +P
Sbjct: 32 LIDYVNS-AQKLWTAG-----HQVIPKEKITKKLMDVKYLVPHKDEDIVATEVSDAIPDH 85
Query: 187 FDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLLTCCG 366
FDAR QWP C SI IRDQS+CGSCWAF A EAI+DR CI SNG +S+EDLL+CC
Sbjct: 86 FDARDQWPNCMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLLSCCT 145
Query: 367 --FRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIG-PYPNCTG 537
F CG+GC GG+P AW +WV GLVTGG Y GC+ Y+ C V G +P C
Sbjct: 146 GMFSCGNGCEGGYPIQAWKWWVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWPACPE 205
Query: 538 EF-PTPKCKKACQA--GYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYA 708
+ PTPKC +C + Y+ Y +DK +G ++Y+V + I EILTNGP+E AF+VY
Sbjct: 206 DTEPTPKCVDSCTSKNNYATPYLQDKHFGSTAYAVGKKVEQIQTEILTNGPIEVAFTVYE 265
Query: 709 DFPNYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGD 855
DF Y +GVY H +G LGGHA+KILGWGV+N TPYWLVANSWN WG+
Sbjct: 266 DFYQYTTGVYVHTAGASLGGHAVKILGWGVDNGTPYWLVANSWNVAWGE 314
>sp|P25807|CPR1_CAEEL Gut-specific cysteine proteinase precursor
Length = 329
Score = 276 bits (705), Expect = 7e-74
Identities = 127/228 (55%), Positives = 157/228 (68%)
Frame = +1
Query: 175 LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLL 354
+P TFD+R QW +CKSI IRDQ+ CGSCWAFGA E I+DR CI + G Q P IS +DLL
Sbjct: 85 VPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPIISPDDLL 144
Query: 355 TCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPNCT 534
+CCG CG+GC GG+P A +W + G+VTGG+Y GC+ Y C+ NC
Sbjct: 145 SCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHG-AGCKPYPIAPCTSG------NCP 197
Query: 535 GEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADF 714
E TP C +CQ+GYS YA+DK +G S+Y+V N +I EI NGPVEAAFSVY DF
Sbjct: 198 -ESKTPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKNAASIQAEIYANGPVEAAFSVYEDF 256
Query: 715 PNYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDN 858
YKSGVY+H +G LGGHAIKI+GWG E+ +PYWLVANSW WG++
Sbjct: 257 YKYKSGVYKHTAGKYLGGHAIKIIGWGTESGSPYWLVANSWGVNWGES 304
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,057,485
Number of Sequences: 369166
Number of extensions: 2420693
Number of successful extensions: 7439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7178
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)