Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_L09
(610 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATP... 146 5e-35
sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATP... 141 1e-33
sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATP... 141 1e-33
sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-... 141 1e-33
sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATP... 104 2e-22
sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATP... 88 2e-17
sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subuni... 84 2e-16
sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subuni... 83 5e-16
sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subuni... 83 5e-16
sp|P32366|VA0D_YEAST Vacuolar ATP synthase subunit d (V-ATP... 75 1e-13
>sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 40 kDa subunit) (M40)
Length = 348
Score = 146 bits (368), Expect = 5e-35
Identities = 68/93 (73%), Positives = 82/93 (88%), Gaps = 1/93 (1%)
Frame = +2
Query: 11 ADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYS 187
ADDYEQVKAVA+YY+EY A+FEG G DK+LEDKFFEHEV +NV++F+QQF+F VFYS
Sbjct: 255 ADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDKFFEHEVNLNVHAFLQQFHFGVFYS 314
Query: 188 LIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 286
+KLKEQE RNIVWI+ECV+Q+HRAKID+YI I
Sbjct: 315 YLKLKEQECRNIVWISECVAQKHRAKIDNYIPI 347
>sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (Physophilin)
Length = 351
Score = 141 bits (356), Expect = 1e-33
Identities = 66/93 (70%), Positives = 79/93 (84%), Gaps = 1/93 (1%)
Frame = +2
Query: 11 ADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYS 187
ADDYEQVK VADYY EYK +FEG G+ DK+LED+FFEHEVK+N +F+ QF+F VFY+
Sbjct: 258 ADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYA 317
Query: 188 LIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 286
+KLKEQE RNIVWIAEC++QRHRAKID+YI I
Sbjct: 318 FVKLKEQECRNIVWIAECIAQRHRAKIDNYIPI 350
>sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
sp|P61421|VA0D_HUMAN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
Length = 351
Score = 141 bits (356), Expect = 1e-33
Identities = 66/93 (70%), Positives = 79/93 (84%), Gaps = 1/93 (1%)
Frame = +2
Query: 11 ADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYS 187
ADDYEQVK VADYY EYK +FEG G+ DK+LED+FFEHEVK+N +F+ QF+F VFY+
Sbjct: 258 ADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYA 317
Query: 188 LIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 286
+KLKEQE RNIVWIAEC++QRHRAKID+YI I
Sbjct: 318 FVKLKEQECRNIVWIAECIAQRHRAKIDNYIPI 350
>sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1) (Vacuolar
proton pump d subunit 1) (V-ATPase 39 kDa subunit 1)
Length = 350
Score = 141 bits (355), Expect = 1e-33
Identities = 66/93 (70%), Positives = 81/93 (87%), Gaps = 1/93 (1%)
Frame = +2
Query: 11 ADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYS 187
ADDYEQVK VA+YY+EY A+F+G G DK+LEDKFFEHEVK++V +F+QQF+F VFY+
Sbjct: 257 ADDYEQVKTVAEYYAEYAALFDGSGNNPGDKTLEDKFFEHEVKLDVYAFLQQFHFGVFYA 316
Query: 188 LIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 286
+KLKEQE RNIVWIAECV+Q+HRAKID+YI I
Sbjct: 317 YLKLKEQECRNIVWIAECVAQKHRAKIDNYIPI 349
>sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa accessory
protein) (DVA41)
Length = 356
Score = 104 bits (259), Expect = 2e-22
Identities = 48/93 (51%), Positives = 67/93 (72%)
Frame = +2
Query: 8 EADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYS 187
+A+D +QV+ + + YS Y+ F G N+KSLED FFEHEV +N +F Q+ + VFY+
Sbjct: 264 KAEDVDQVRGILEVYSTYRNFFSD-GVNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYA 322
Query: 188 LIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 286
IKL+EQE+RNIVWIAEC+SQ + K++ YI I
Sbjct: 323 YIKLREQEIRNIVWIAECISQNMKQKMNQYIPI 355
>sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa subunit)
Length = 364
Score = 87.8 bits (216), Expect = 2e-17
Identities = 39/106 (36%), Positives = 68/106 (64%), Gaps = 14/106 (13%)
Frame = +2
Query: 11 ADDYEQVKAVADYYSEYKAIFEGVGTGND--------------KSLEDKFFEHEVKMNVN 148
ADD+E V+ + ++YK+ F+ G G KSLED F++ E++++
Sbjct: 258 ADDFEGVRLAVEGVADYKSFFDAAGLGGGPSGPGNMGGGGTEGKSLEDMFYQKEMEISKM 317
Query: 149 SFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 286
+F +QF +A+ Y+ +KL+EQE+RNI WIAEC++Q + +I++YI++
Sbjct: 318 AFTRQFTYAIVYAWVKLREQEIRNITWIAECIAQNQKERINNYISV 363
>sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa
subunit 2)
Length = 350
Score = 84.3 bits (207), Expect = 2e-16
Identities = 38/93 (40%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Frame = +2
Query: 14 DDYEQVKAVADYYSEYKAIFEGVGTGNDK--SLEDKFFEHEVKMNVNSFMQQFNFAVFYS 187
+D ++++ V + + Y +F+ + +D +LED+F E K NV +F+QQ++F +FYS
Sbjct: 255 NDTDKIRDVCNVFDGYGKMFDNLERDSDGMITLEDRFLMMEAKKNVQTFLQQYHFGIFYS 314
Query: 188 LIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 286
IKLK+ E+RNIVWI+EC++QR +I+++I I
Sbjct: 315 FIKLKQLEVRNIVWISECIAQRQTDRINAFIPI 347
>sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2)
Length = 351
Score = 83.2 bits (204), Expect = 5e-16
Identities = 35/85 (41%), Positives = 61/85 (71%)
Frame = +2
Query: 14 DDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLI 193
+D +QV+ V + Y Y+AIF + G + L+ F+E EV+ +F QQF++AVF++ +
Sbjct: 259 EDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYM 318
Query: 194 KLKEQEMRNIVWIAECVSQRHRAKI 268
+L+EQE+RN++WI+ECV+Q +++I
Sbjct: 319 RLREQEIRNLMWISECVAQNQKSRI 343
>sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1)
(Vacuolar proton pump d subunit 1)
Length = 351
Score = 83.2 bits (204), Expect = 5e-16
Identities = 35/85 (41%), Positives = 61/85 (71%)
Frame = +2
Query: 14 DDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLI 193
+D +QV+ V + Y Y+AIF + G + L+ F+E EV+ +F QQF++AVF++ +
Sbjct: 259 EDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYM 318
Query: 194 KLKEQEMRNIVWIAECVSQRHRAKI 268
+L+EQE+RN++WI+ECV+Q +++I
Sbjct: 319 RLREQEIRNLMWISECVAQNQKSRI 343
>sp|P32366|VA0D_YEAST Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 39 kDa subunit)
(V-ATPase subunit M39)
Length = 345
Score = 75.5 bits (184), Expect = 1e-13
Identities = 38/93 (40%), Positives = 61/93 (65%)
Frame = +2
Query: 8 EADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYS 187
+A D+E V+A EY+ E TGN LED F++ E+++ ++F QQF + ++
Sbjct: 258 QAQDFEGVRAALANVYEYRGFLE---TGN---LEDHFYQLEMELCRDAFTQQFAISTVWA 311
Query: 188 LIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 286
+K KEQE+RNI WIAEC++Q R +I++YI++
Sbjct: 312 WMKSKEQEVRNITWIAECIAQNQRERINNYISV 344
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,083,753
Number of Sequences: 369166
Number of extensions: 1172242
Number of successful extensions: 2828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2805
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)