Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_L01-2
(417 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P96649|RAPI_BACSU Response regulator aspartate phosphata... 28 5.8
sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, a... 28 5.8
sp|P32206|VC13_SWPVK Protein C13 28 7.5
sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal musc... 28 9.8
>sp|P96649|RAPI_BACSU Response regulator aspartate phosphatase I
Length = 391
Score = 28.5 bits (62), Expect = 5.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 89 PDDLKCLKADEFFSV--NDQKAAMEKLMTAVSTQMFELKSRQEQLLYF 226
P DL K +E+++ NDQ E + T V ++ ++ Q+ LLY+
Sbjct: 12 PYDLVTKKLNEWYTSIKNDQVEQAEIIKTEVEKELLNMEENQDALLYY 59
>sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, adult
Length = 1939
Score = 28.5 bits (62), Expect = 5.8
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 86 EPDDLKCLKADEFFSVNDQKAAMEKLMTAVSTQMFELKSRQEQ 214
E DDL A SV+ KA +EK+ + Q+ E+K+++EQ
Sbjct: 1230 EIDDL----ASNMESVSKAKANLEKMCRTLEDQLSEIKTKEEQ 1268
>sp|P32206|VC13_SWPVK Protein C13
Length = 500
Score = 28.1 bits (61), Expect = 7.5
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -1
Query: 234 KSLKYNNCSCLDLSS-----NICVETAVINFSIAAF*SLTEKNSSAFKHFKSSGSAILGN 70
K++ + SC+D S + CV+ I FS F + + K F + IL +
Sbjct: 102 KAIDFLKNSCIDFMSKHITDSTCVKIYKIGFSNGCFAVYNDAIAYIRKRFTKIETDILLS 161
Query: 69 LSLQDLRKLL 40
LSL DLR +L
Sbjct: 162 LSLFDLRIIL 171
>sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal muscle, embryonic
Length = 1940
Score = 27.7 bits (60), Expect = 9.8
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 86 EPDDLKCLKADEFFSVNDQKAAMEKLMTAVSTQMFELKSRQEQ 214
E DDL A SV+ KA +EK+ ++ Q+ E+K+++E+
Sbjct: 1232 EIDDL----ASNMESVSKAKANLEKMCRSLEDQLSEIKTKEEE 1270
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,276,445
Number of Sequences: 369166
Number of extensions: 611176
Number of successful extensions: 1357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)