Planarian EST Database


Dr_sW_019_L01-2

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_019_L01-2
         (417 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P96649|RAPI_BACSU  Response regulator aspartate phosphata...    28   5.8  
sp|P13538|MYSS_CHICK  Myosin heavy chain, skeletal muscle, a...    28   5.8  
sp|P32206|VC13_SWPVK  Protein C13                                  28   7.5  
sp|P02565|MYH3_CHICK  Myosin heavy chain, fast skeletal musc...    28   9.8  
>sp|P96649|RAPI_BACSU Response regulator aspartate phosphatase I
          Length = 391

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 89  PDDLKCLKADEFFSV--NDQKAAMEKLMTAVSTQMFELKSRQEQLLYF 226
           P DL   K +E+++   NDQ    E + T V  ++  ++  Q+ LLY+
Sbjct: 12  PYDLVTKKLNEWYTSIKNDQVEQAEIIKTEVEKELLNMEENQDALLYY 59
>sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, adult
          Length = 1939

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 86   EPDDLKCLKADEFFSVNDQKAAMEKLMTAVSTQMFELKSRQEQ 214
            E DDL    A    SV+  KA +EK+   +  Q+ E+K+++EQ
Sbjct: 1230 EIDDL----ASNMESVSKAKANLEKMCRTLEDQLSEIKTKEEQ 1268
>sp|P32206|VC13_SWPVK Protein C13
          Length = 500

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -1

Query: 234 KSLKYNNCSCLDLSS-----NICVETAVINFSIAAF*SLTEKNSSAFKHFKSSGSAILGN 70
           K++ +   SC+D  S     + CV+   I FS   F    +  +   K F    + IL +
Sbjct: 102 KAIDFLKNSCIDFMSKHITDSTCVKIYKIGFSNGCFAVYNDAIAYIRKRFTKIETDILLS 161

Query: 69  LSLQDLRKLL 40
           LSL DLR +L
Sbjct: 162 LSLFDLRIIL 171
>sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal muscle, embryonic
          Length = 1940

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +2

Query: 86   EPDDLKCLKADEFFSVNDQKAAMEKLMTAVSTQMFELKSRQEQ 214
            E DDL    A    SV+  KA +EK+  ++  Q+ E+K+++E+
Sbjct: 1232 EIDDL----ASNMESVSKAKANLEKMCRSLEDQLSEIKTKEEE 1270
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,276,445
Number of Sequences: 369166
Number of extensions: 611176
Number of successful extensions: 1357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)