Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_019_L01-2 (417 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P96649|RAPI_BACSU Response regulator aspartate phosphata... 28 5.8 sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, a... 28 5.8 sp|P32206|VC13_SWPVK Protein C13 28 7.5 sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal musc... 28 9.8
>sp|P96649|RAPI_BACSU Response regulator aspartate phosphatase I Length = 391 Score = 28.5 bits (62), Expect = 5.8 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = +2 Query: 89 PDDLKCLKADEFFSV--NDQKAAMEKLMTAVSTQMFELKSRQEQLLYF 226 P DL K +E+++ NDQ E + T V ++ ++ Q+ LLY+ Sbjct: 12 PYDLVTKKLNEWYTSIKNDQVEQAEIIKTEVEKELLNMEENQDALLYY 59
>sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, adult Length = 1939 Score = 28.5 bits (62), Expect = 5.8 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +2 Query: 86 EPDDLKCLKADEFFSVNDQKAAMEKLMTAVSTQMFELKSRQEQ 214 E DDL A SV+ KA +EK+ + Q+ E+K+++EQ Sbjct: 1230 EIDDL----ASNMESVSKAKANLEKMCRTLEDQLSEIKTKEEQ 1268
>sp|P32206|VC13_SWPVK Protein C13 Length = 500 Score = 28.1 bits (61), Expect = 7.5 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = -1 Query: 234 KSLKYNNCSCLDLSS-----NICVETAVINFSIAAF*SLTEKNSSAFKHFKSSGSAILGN 70 K++ + SC+D S + CV+ I FS F + + K F + IL + Sbjct: 102 KAIDFLKNSCIDFMSKHITDSTCVKIYKIGFSNGCFAVYNDAIAYIRKRFTKIETDILLS 161 Query: 69 LSLQDLRKLL 40 LSL DLR +L Sbjct: 162 LSLFDLRIIL 171
>sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal muscle, embryonic Length = 1940 Score = 27.7 bits (60), Expect = 9.8 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = +2 Query: 86 EPDDLKCLKADEFFSVNDQKAAMEKLMTAVSTQMFELKSRQEQ 214 E DDL A SV+ KA +EK+ ++ Q+ E+K+++E+ Sbjct: 1232 EIDDL----ASNMESVSKAKANLEKMCRSLEDQLSEIKTKEEE 1270
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,276,445 Number of Sequences: 369166 Number of extensions: 611176 Number of successful extensions: 1357 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1344 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1357 length of database: 68,354,980 effective HSP length: 99 effective length of database: 50,066,215 effective search space used: 1952582385 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)