Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_L01-1
(424 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q25147|S61A_HALRO Protein transport protein Sec61 alpha ... 148 4e-36
sp|P61619|S61A1_HUMAN Protein transport protein Sec61 alpha... 145 4e-35
sp|P38377|S61A1_CANFA Protein transport protein Sec61 alpha... 145 4e-35
sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 alpha... 144 8e-35
sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 alpha... 144 8e-35
sp|Q8AY36|SC61A_PAGBO Protein transport protein Sec61 alpha... 144 8e-35
sp|Q98SN8|S61A2_ONCMY Protein transport protein Sec61 alpha... 144 8e-35
sp|Q90ZM2|S61A1_BRARE Protein transport protein Sec61 alpha... 142 2e-34
sp|Q8AY31|SC61A_BOVVA Protein transport protein Sec61 alpha... 142 2e-34
sp|Q8AY34|SC61A_HEMAM Protein transport protein Sec61 alpha... 142 2e-34
>sp|Q25147|S61A_HALRO Protein transport protein Sec61 alpha subunit
Length = 475
Score = 148 bits (374), Expect = 4e-36
Identities = 76/81 (93%), Positives = 78/81 (96%)
Frame = +1
Query: 1 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 180
QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADF+GAIGSGTGILLAVTIIYQ
Sbjct: 396 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFIGAIGSGTGILLAVTIIYQ 455
Query: 181 YFEIFVKEQNEMGGSMSTLLF 243
YFEIFVKEQ E+GG M TLLF
Sbjct: 456 YFEIFVKEQAEVGG-MGTLLF 475
>sp|P61619|S61A1_HUMAN Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
alpha-1)
sp|P61621|S61A1_RAT Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
alpha-1)
sp|P61620|S61A1_MOUSE Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
alpha-1)
Length = 476
Score = 145 bits (365), Expect = 4e-35
Identities = 74/81 (91%), Positives = 77/81 (95%)
Frame = +1
Query: 1 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 180
QQMVMRGHRE SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 456
Query: 181 YFEIFVKEQNEMGGSMSTLLF 243
YFEIFVKEQ+E+ GSM LLF
Sbjct: 457 YFEIFVKEQSEV-GSMGALLF 476
>sp|P38377|S61A1_CANFA Protein transport protein Sec61 alpha subunit isoform 1 (Sec61
alpha-1)
Length = 476
Score = 145 bits (365), Expect = 4e-35
Identities = 74/81 (91%), Positives = 77/81 (95%)
Frame = +1
Query: 1 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 180
QQMVMRGHRE SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 456
Query: 181 YFEIFVKEQNEMGGSMSTLLF 243
YFEIFVKEQ+E+ GSM LLF
Sbjct: 457 YFEIFVKEQSEV-GSMGALLF 476
>sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 alpha subunit
sp|Q7T277|SC61A_DISMA Protein transport protein Sec61 alpha subunit
Length = 476
Score = 144 bits (363), Expect = 8e-35
Identities = 73/81 (90%), Positives = 76/81 (93%)
Frame = +1
Query: 1 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 180
QQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQ 456
Query: 181 YFEIFVKEQNEMGGSMSTLLF 243
YFEIFVKEQ+EM GSM LLF
Sbjct: 457 YFEIFVKEQSEM-GSMGALLF 476
>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 alpha subunit
Length = 476
Score = 144 bits (363), Expect = 8e-35
Identities = 73/81 (90%), Positives = 76/81 (93%)
Frame = +1
Query: 1 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 180
QQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQ 456
Query: 181 YFEIFVKEQNEMGGSMSTLLF 243
YFEIFVKEQ+EM GSM LLF
Sbjct: 457 YFEIFVKEQSEM-GSMGALLF 476
>sp|Q8AY36|SC61A_PAGBO Protein transport protein Sec61 alpha subunit
sp|Q8AY35|SC61A_NOTAN Protein transport protein Sec61 alpha subunit
Length = 476
Score = 144 bits (363), Expect = 8e-35
Identities = 73/81 (90%), Positives = 76/81 (93%)
Frame = +1
Query: 1 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 180
QQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQ 456
Query: 181 YFEIFVKEQNEMGGSMSTLLF 243
YFEIFVKEQ+EM GSM LLF
Sbjct: 457 YFEIFVKEQSEM-GSMGALLF 476
>sp|Q98SN8|S61A2_ONCMY Protein transport protein Sec61 alpha subunit isoform B
Length = 476
Score = 144 bits (363), Expect = 8e-35
Identities = 73/81 (90%), Positives = 76/81 (93%)
Frame = +1
Query: 1 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 180
QQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQ 456
Query: 181 YFEIFVKEQNEMGGSMSTLLF 243
YFEIFVKEQ+EM GSM LLF
Sbjct: 457 YFEIFVKEQSEM-GSMGALLF 476
>sp|Q90ZM2|S61A1_BRARE Protein transport protein Sec61 alpha subunit isoform A
Length = 476
Score = 142 bits (359), Expect = 2e-34
Identities = 72/81 (88%), Positives = 76/81 (93%)
Frame = +1
Query: 1 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 180
QQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQ 456
Query: 181 YFEIFVKEQNEMGGSMSTLLF 243
YFEIFVKEQ+E+ GSM LLF
Sbjct: 457 YFEIFVKEQSEV-GSMGALLF 476
>sp|Q8AY31|SC61A_BOVVA Protein transport protein Sec61 alpha subunit
Length = 476
Score = 142 bits (359), Expect = 2e-34
Identities = 72/81 (88%), Positives = 76/81 (93%)
Frame = +1
Query: 1 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 180
QQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQ 456
Query: 181 YFEIFVKEQNEMGGSMSTLLF 243
YFEIFVKEQ+E+ GSM LLF
Sbjct: 457 YFEIFVKEQSEV-GSMGALLF 476
>sp|Q8AY34|SC61A_HEMAM Protein transport protein Sec61 alpha subunit
Length = 476
Score = 142 bits (359), Expect = 2e-34
Identities = 72/81 (88%), Positives = 76/81 (93%)
Frame = +1
Query: 1 QQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQ 180
QQMVMRGHRE SM+HELNRYIPTAAAFGGLCIG LSV+ADFLGAIGSGTGILLAVTIIYQ
Sbjct: 397 QQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQ 456
Query: 181 YFEIFVKEQNEMGGSMSTLLF 243
YFEIFVKEQ+E+ GSM LLF
Sbjct: 457 YFEIFVKEQSEV-GSMGALLF 476
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,087,337
Number of Sequences: 369166
Number of extensions: 864211
Number of successful extensions: 2965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2958
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)