Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_K08
(870 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprote... 112 2e-24
sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein... 110 4e-24
sp|P60335|PCBP1_MOUSE Poly(rC)-binding protein 1 (Alpha-CP1... 79 2e-14
sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 (Alpha-CP2... 77 8e-14
sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 (Alpha-CP2... 74 4e-13
sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3) 71 3e-12
sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3) 71 3e-12
sp|P57724|PCBP4_MOUSE Poly(rC)-binding protein 4 (Alpha-CP4) 61 5e-09
sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4) 60 6e-09
sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein ... 60 8e-09
>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K (hnRNP K)
Length = 463
Score = 112 bits (279), Expect = 2e-24
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 13/192 (6%)
Frame = +1
Query: 82 IEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHGPERVFILESTMDNCIKVWH 261
+E R L+ SK A +IGKGG+ I+ LR + NA +S+PD+ GPER+ + + ++ ++
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILK 102
Query: 262 DCLPDLKDCM---FPNVDQRKSSGS----------FRDDNPDMDLRFLVHDSQVGAIIGK 402
+P L++ + P + S F+ + D +LR L+H S G IIG
Sbjct: 103 KIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHFKGSDFDCELRLLIHQSLAGGIIGV 162
Query: 403 GGVNVKNLRMQYQLNVIKVFPVTAPNSSDRLVQMVGKFEKVFECFRVIYETLESQSIKGK 582
G +K LR Q IK+F P+S+DR+V + GK ++V EC ++I + + IKG+
Sbjct: 163 KGAKIKELRENTQ-TTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGR 221
Query: 583 IENYNSENFDES 618
+ Y+ +DE+
Sbjct: 222 AQPYDPNFYDET 233
Score = 47.4 bits (111), Expect = 5e-05
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +1
Query: 295 PNVDQRKSSGSFRDDNPD--MDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQLNVIKVFPV 468
P D + R N D ++LR L+ GA+IGKGG N+K LR Y + V
Sbjct: 23 PAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNAS------V 76
Query: 469 TAPNSS--DRLVQMVGKFEKVFECFRVIYETLE 561
+ P+SS +R++ + E + E + I TLE
Sbjct: 77 SVPDSSGPERILSISADIETIGEILKKIIPTLE 109
Score = 40.0 bits (92), Expect = 0.008
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 73 GNRIEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSI--PDNHGPERVFILESTMD 240
G I + IP A IIGKGG+RI+++RHE A + I P +R+ + T D
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQD 442
>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K (dC stretch-binding
protein) (CSBP)
sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K
sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K (hnRNP K) (Transformation
up-regulated nuclear protein) (TUNP)
Length = 463
Score = 110 bits (276), Expect = 4e-24
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 13/192 (6%)
Frame = +1
Query: 82 IEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHGPERVFILESTMDNCIKVWH 261
+E R L+ SK A +IGKGG+ I+ LR + NA +S+PD+ GPER+ + + ++ ++
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILK 102
Query: 262 DCLPDLKDCM---FPNVDQRKSSGS----------FRDDNPDMDLRFLVHDSQVGAIIGK 402
+P L++ + P + S ++ + D +LR L+H S G IIG
Sbjct: 103 KIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGV 162
Query: 403 GGVNVKNLRMQYQLNVIKVFPVTAPNSSDRLVQMVGKFEKVFECFRVIYETLESQSIKGK 582
G +K LR Q IK+F P+S+DR+V + GK ++V EC ++I + + IKG+
Sbjct: 163 KGAKIKELRENTQ-TTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGR 221
Query: 583 IENYNSENFDES 618
+ Y+ +DE+
Sbjct: 222 AQPYDPNFYDET 233
Score = 47.4 bits (111), Expect = 5e-05
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +1
Query: 295 PNVDQRKSSGSFRDDNPD--MDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQLNVIKVFPV 468
P D + R N D ++LR L+ GA+IGKGG N+K LR Y + V
Sbjct: 23 PAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNAS------V 76
Query: 469 TAPNSS--DRLVQMVGKFEKVFECFRVIYETLE 561
+ P+SS +R++ + E + E + I TLE
Sbjct: 77 SVPDSSGPERILSISADIETIGEILKKIIPTLE 109
Score = 40.0 bits (92), Expect = 0.008
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 73 GNRIEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSI--PDNHGPERVFILESTMD 240
G I + IP A IIGKGG+RI+++RHE A + I P +R+ + T D
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQD 442
>sp|P60335|PCBP1_MOUSE Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic
acid-binding protein SUB2.3)
sp|O19048|PCBP1_RABIT Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
Length = 356
Score = 78.6 bits (192), Expect = 2e-14
Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 4/172 (2%)
Frame = +1
Query: 82 IEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHGPERVFILESTMDNCIKVWH 261
+ R L+ K IIGK GE ++R+R E AR++I + + PER+ L + K +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 262 DCLPDLKDCMFPNVDQRKSSGSFRDDNPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQ 441
+ L++ + N S+ + R P + LR +V +Q G++IGKGG +K +R
Sbjct: 74 MIIDKLEEDI--NSSMTNSTAASR---PPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 442 LNVIKVFPVTAPNSSDRLVQMVGKFEKVFECFR----VIYETLESQSIKGKI 585
V +V PNS++R + + G + V EC + V+ ETL SQS +G++
Sbjct: 129 AQV-QVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETL-SQSPQGRV 178
Score = 44.7 bits (104), Expect = 3e-04
Identities = 22/74 (29%), Positives = 41/74 (55%)
Frame = +1
Query: 340 NPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQLNVIKVFPVTAPNSSDRLVQMVGKFE 519
N + +R L+H +VG+IIGK G +VK +R + + ++ N +R++ + G
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARI----NISEGNCPERIITLTGPTN 66
Query: 520 KVFECFRVIYETLE 561
+F+ F +I + LE
Sbjct: 67 AIFKAFAMIIDKLE 80
>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)
Length = 365
Score = 76.6 bits (187), Expect = 8e-14
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Frame = +1
Query: 82 IEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHGPERVFILESTMDNCIKVWH 261
+ R L+ K IIGK GE ++++R E AR++I + + PER+ L + K +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFA 73
Query: 262 DCLPDLKDCMFPNVDQRKSSGSFRDDNPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQ 441
+ L++ + ++ + S P + LR +V SQ G++IGKGG +K +R
Sbjct: 74 MIIDKLEEDISSSM-----TNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 442 LNVIKVFPVTAPNSSDRLVQMVGKFEKVFECFR----VIYETLESQSIKG 579
V +V PNS++R + + G + + EC + V+ ETL KG
Sbjct: 129 AQV-QVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKG 177
Score = 44.7 bits (104), Expect = 3e-04
Identities = 22/74 (29%), Positives = 41/74 (55%)
Frame = +1
Query: 340 NPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQLNVIKVFPVTAPNSSDRLVQMVGKFE 519
N + +R L+H +VG+IIGK G +VK +R + + ++ N +R++ + G
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARI----NISEGNCPERIITLAGPTN 66
Query: 520 KVFECFRVIYETLE 561
+F+ F +I + LE
Sbjct: 67 AIFKAFAMIIDKLE 80
>sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 (Alpha-CP2) (Putative heterogeneous
nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP)
Length = 362
Score = 74.3 bits (181), Expect = 4e-13
Identities = 47/166 (28%), Positives = 82/166 (49%)
Frame = +1
Query: 82 IEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHGPERVFILESTMDNCIKVWH 261
+ R L+ K IIGK GE ++++R E AR++I + + PER+ L + K +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFA 73
Query: 262 DCLPDLKDCMFPNVDQRKSSGSFRDDNPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQ 441
+ L++ + ++ + S P + LR +V SQ G++IGKGG +K +R
Sbjct: 74 MIIDKLEEDISSSM-----TNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 442 LNVIKVFPVTAPNSSDRLVQMVGKFEKVFECFRVIYETLESQSIKG 579
V +V PNS++R + + G + + EC + I + KG
Sbjct: 129 AQV-QVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKG 173
Score = 44.7 bits (104), Expect = 3e-04
Identities = 22/74 (29%), Positives = 41/74 (55%)
Frame = +1
Query: 340 NPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQLNVIKVFPVTAPNSSDRLVQMVGKFE 519
N + +R L+H +VG+IIGK G +VK +R + + ++ N +R++ + G
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARI----NISEGNCPERIITLAGPTN 66
Query: 520 KVFECFRVIYETLE 561
+F+ F +I + LE
Sbjct: 67 AIFKAFAMIIDKLE 80
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 (Alpha-CP3)
Length = 339
Score = 71.2 bits (173), Expect = 3e-12
Identities = 47/166 (28%), Positives = 80/166 (48%)
Frame = +1
Query: 82 IEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHGPERVFILESTMDNCIKVWH 261
+ R L+ K IIGK GE ++++R E AR++I + + PER+ + D K +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFA 73
Query: 262 DCLPDLKDCMFPNVDQRKSSGSFRDDNPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQ 441
++ + ++ S S P + LR +V SQ G++IGKGG +K +R
Sbjct: 74 MIAYKFEEDIINSM-----SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 442 LNVIKVFPVTAPNSSDRLVQMVGKFEKVFECFRVIYETLESQSIKG 579
V +V PNS++R V + G + + +C + I + KG
Sbjct: 129 AQV-QVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKG 173
Score = 42.4 bits (98), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +1
Query: 340 NPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQLNVIKVFPVTAPNSSDRLVQMVGKFE 519
N + +R L+H +VG+IIGK G VK +R + + ++ N +R+V + G +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARI----NISEGNCPERIVTITGPTD 66
Query: 520 KVFECFRVIYETLESQSI 573
+F+ F +I E I
Sbjct: 67 AIFKAFAMIAYKFEEDII 84
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 (Alpha-CP3)
Length = 339
Score = 71.2 bits (173), Expect = 3e-12
Identities = 47/166 (28%), Positives = 80/166 (48%)
Frame = +1
Query: 82 IEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHGPERVFILESTMDNCIKVWH 261
+ R L+ K IIGK GE ++++R E AR++I + + PER+ + D K +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFA 73
Query: 262 DCLPDLKDCMFPNVDQRKSSGSFRDDNPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQ 441
++ + ++ S S P + LR +V SQ G++IGKGG +K +R
Sbjct: 74 MIAYKFEEDIINSM-----SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 442 LNVIKVFPVTAPNSSDRLVQMVGKFEKVFECFRVIYETLESQSIKG 579
V +V PNS++R V + G + + +C + I + KG
Sbjct: 129 AQV-QVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKG 173
Score = 42.4 bits (98), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +1
Query: 340 NPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQLNVIKVFPVTAPNSSDRLVQMVGKFE 519
N + +R L+H +VG+IIGK G VK +R + + ++ N +R+V + G +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARI----NISEGNCPERIVTITGPTD 66
Query: 520 KVFECFRVIYETLESQSI 573
+F+ F +I E I
Sbjct: 67 AIFKAFAMIAYKFEEDII 84
>sp|P57724|PCBP4_MOUSE Poly(rC)-binding protein 4 (Alpha-CP4)
Length = 403
Score = 60.8 bits (146), Expect = 5e-09
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 5/177 (2%)
Frame = +1
Query: 82 IEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHGPERVFILESTMDNCIKVWH 261
+ R L+ K IIGK GE ++R+R + +AR++I + PER+ + + V+H
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITG---STAAVFH 74
Query: 262 DCLP-----DLKDCMFPNVDQRKSSGSFRDDNPDMDLRFLVHDSQVGAIIGKGGVNVKNL 426
D C P + GS P + LR ++ SQ G++IGK G +K +
Sbjct: 75 AVSMIAFKLDEDLCAAP-----ANGGSV--SRPPVTLRLVIPASQCGSLIGKAGTKIKEI 127
Query: 427 RMQYQLNVIKVFPVTAPNSSDRLVQMVGKFEKVFECFRVIYETLESQSIKGKIENYN 597
R V +V PNS++R V + G + + C R I + KG Y+
Sbjct: 128 RETTGAQV-QVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 183
>sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 (Alpha-CP4)
Length = 403
Score = 60.5 bits (145), Expect = 6e-09
Identities = 45/172 (26%), Positives = 80/172 (46%)
Frame = +1
Query: 82 IEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHGPERVFILESTMDNCIKVWH 261
+ R L+ K IIGK GE ++R+R + +AR++I + PER+ +T+
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERI----TTITGSTAAVF 73
Query: 262 DCLPDLKDCMFPNVDQRKSSGSFRDDNPDMDLRFLVHDSQVGAIIGKGGVNVKNLRMQYQ 441
+ + + ++ ++G P + LR ++ SQ G++IGK G +K +R
Sbjct: 74 HAVSMIAFKLDEDLCAAPANGG-NVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTG 132
Query: 442 LNVIKVFPVTAPNSSDRLVQMVGKFEKVFECFRVIYETLESQSIKGKIENYN 597
V +V PNS++R V + G + + C R I + KG Y+
Sbjct: 133 AQV-QVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 183
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3)
Length = 572
Score = 60.1 bits (144), Expect = 8e-09
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 7/176 (3%)
Frame = +1
Query: 94 FLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHG--PERVFILESTMDNCIKVWHDC 267
F +P K IIG+GGE+I R++ E ++ I PER +L T ++
Sbjct: 82 FKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES-------- 133
Query: 268 LPDLKDCMFPNVDQRKSSGSFRDDNPDMDL--RFLVHDSQVGAIIGKGGVNVKNLRMQYQ 441
+ K + VD+ ++ F +D L+ S+VG +IG+GG +K L+ +
Sbjct: 134 IEQAKRLLGQIVDRCRNGPGFHNDIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTG 193
Query: 442 LNVIKVFPVTAPNSSDRLVQMVGKFEKVFECFRVIYETL---ESQSIKGKIENYNS 600
+ ++ + P +D+ +++ G KV + ++ E + + +G ++NS
Sbjct: 194 VKMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVRGDFNS 249
Score = 42.7 bits (99), Expect = 0.001
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Frame = +1
Query: 100 IPSKAASIIIGKGGERIQRLRHECNARLSIPDNHG--PERVFILESTMDNCIKVWHDCLP 273
+P A I+IG+ GE I++++++ R+ + G PER + D C H
Sbjct: 260 VPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIISE 319
Query: 274 DLKDCM----FPNVDQRKSSGSFRDD------NPDMDLRFLVHDSQVGAIIGKGGVNVKN 423
+ F + + G R D ++ + V + G +IGKGG N+K+
Sbjct: 320 LILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENIKS 379
Query: 424 LRMQ 435
+ Q
Sbjct: 380 INQQ 383
Score = 36.6 bits (83), Expect = 0.093
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 67 APGNRIEFRFLIPSKAASIIIGKGGERIQRLRHECNARLSIPDNHGP 207
APG E + +P+ ++IGKGGE I+ + + A + + N P
Sbjct: 350 APGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPP 396
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,394,082
Number of Sequences: 369166
Number of extensions: 1583674
Number of successful extensions: 5509
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5041
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)