Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_K02
(759 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23368|MAOM_HUMAN NAD-dependent malic enzyme, mitochondr... 32 1.9
sp|P37222|MAOC_LYCES NADP-dependent malic enzyme, chloropla... 31 3.2
sp|Q99KE1|MAOM_MOUSE NAD-dependent malic enzyme, mitochondr... 31 4.1
sp|O75448|TR100_HUMAN Thyroid hormone receptor-associated p... 30 5.4
>sp|P23368|MAOM_HUMAN NAD-dependent malic enzyme, mitochondrial precursor (NAD-ME) (Malic
enzyme 2)
Length = 584
Score = 32.0 bits (71), Expect = 1.9
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -2
Query: 521 PLEKIIYVVG-----TTWFLLLCPDTIDTYPSIVLLPKVGCQCQEYDWLME*RVG*FL 363
PLEK IY++G F + D I++ IV P VG C +Y + G F+
Sbjct: 78 PLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFI 135
>sp|P37222|MAOC_LYCES NADP-dependent malic enzyme, chloroplast (NADP-ME)
Length = 573
Score = 31.2 bits (69), Expect = 3.2
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 482 FLLLCPDTIDTYPSIVLLPKVGCQCQEYDWLME*RVG*FLYFPNK-KI*NHPVIGDW 315
F L D ++ IV P VG CQ+Y W+ + G F K KI H V+ +W
Sbjct: 107 FYKLLIDNVEELLPIVYTPTVGEACQKYGWIFKRPQGLFFSLKEKGKI--HEVLKNW 161
>sp|Q99KE1|MAOM_MOUSE NAD-dependent malic enzyme, mitochondrial precursor (NAD-ME) (Malic
enzyme 2)
Length = 589
Score = 30.8 bits (68), Expect = 4.1
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -2
Query: 521 PLEKIIYVVG-----TTWFLLLCPDTIDTYPSIVLLPKVGCQCQEYDWLME*RVG*FL 363
PLEK IY++G F + D I++ IV P VG C +Y + G F+
Sbjct: 78 PLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACCQYGHIFRRPKGLFI 135
>sp|O75448|TR100_HUMAN Thyroid hormone receptor-associated protein complex 100 kDa
component (Trap100) (Thyroid hormone receptor associated
protein 4) (Vitamin D3 receptor-interacting protein
complex component DRIP100) (Activator-recruited cofactor
100 kDa component) (ARC100)
Length = 989
Score = 30.4 bits (67), Expect = 5.4
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 140 LAFCERRYQDSKSYL--RAVLRMTNLEDLNRLTAA--GLMTLGQIFMNISNSDVNS 295
LA C +R + + S RA+L + LE+ + TA L+ LG+I N+SN + S
Sbjct: 158 LAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNPQLRS 213
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,877,914
Number of Sequences: 369166
Number of extensions: 1759927
Number of successful extensions: 3584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3584
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)