Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_J22
(915 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F mem... 304 3e-82
sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F membe... 303 4e-82
sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 301 1e-81
sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F mem... 300 4e-81
sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F mem... 300 4e-81
sp|P40024|YEM6_YEAST Probable ATP-dependent transporter YER... 192 8e-49
sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F mem... 186 8e-47
sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F mem... 186 8e-47
sp|P43535|GCN20_YEAST Protein GCN20 157 3e-38
sp|P63390|YHES_ECO57 Hypothetical ABC transporter ATP-bindi... 151 2e-36
>sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F member 1
Length = 837
Score = 304 bits (778), Expect = 3e-82
Identities = 149/245 (60%), Positives = 189/245 (77%)
Frame = +3
Query: 87 PTELLEKPKEYQVKFDFPNPQKLSGSILSLTNVSFAYSKTSTDLFTKVDFGVDMNSRVSI 266
P ELL++PKEY V+F FP+P LS +L L V+F Y + LF +DFG+DM+SR+ I
Sbjct: 590 PPELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGY-EGQKPLFKNLDFGIDMDSRICI 648
Query: 267 VGPNGVGKSTFLKLLTGEIEPTIGERSLNHRIKLGKYNQHSGDQLNMKETPVEYLRRLFN 446
VGPNGVGKST L LLTG++ PT GE NHR+K+G +NQ +QL+M+ETP EYL+R FN
Sbjct: 649 VGPNGVGKSTLLLLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSFN 708
Query: 447 LGYQDARQNLGRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLE 626
L YQDAR+ LGRFGLESHAH I LSGGQ+ARV FA+LA +PD+LILDEPTNNLD+E
Sbjct: 709 LPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIE 768
Query: 627 SIEALCKAIEQYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRKEVLNALN 806
SI+AL +AI Y+G V+VV+HD RLI +T+C LWVVE + + +IDG+FDDY++EVL AL
Sbjct: 769 SIDALGEAINDYKGAVIVVSHDARLITETNCQLWVVEEQGVSQIDGDFDDYKREVLEALG 828
Query: 807 EEISN 821
E + N
Sbjct: 829 EVMVN 833
Score = 74.3 bits (181), Expect = 4e-13
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 31/230 (13%)
Frame = +3
Query: 189 FAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFLKLLTGE---IEPTIGE------ 341
F+ S +LF D + R +VGPNG GK+T LK + I P I
Sbjct: 301 FSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 360
Query: 342 -------------RSLNHRIKLGKYNQHSGDQLNM-KETPVEYLRRLFN--------LGY 455
R+ R++L + + QL +T E L +++
Sbjct: 361 VVADETPAVQAVLRADTKRLRLLEEERRLQGQLEQGDDTAAEKLEKVYEELRATGAAAAE 420
Query: 456 QDARQNLGRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIE 635
AR+ L G + P SGG R RV+ A+ +P LL+LDEPTN+LDL ++
Sbjct: 421 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 480
Query: 636 ALCKAIEQYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRK 785
L ++ + +++V+HD+ + + ++ + + G + ++K
Sbjct: 481 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKK 530
>sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50)
Length = 839
Score = 303 bits (776), Expect = 4e-82
Identities = 148/245 (60%), Positives = 191/245 (77%)
Frame = +3
Query: 87 PTELLEKPKEYQVKFDFPNPQKLSGSILSLTNVSFAYSKTSTDLFTKVDFGVDMNSRVSI 266
P ELL++P+EY V+F FP+P LS +L L V+F Y + LF +DFG+DM+SR+ I
Sbjct: 592 PPELLKRpreYTVRFTFPDPPPLSPPVLGLHGVTFGY-EGQKPLFKNLDFGIDMDSRICI 650
Query: 267 VGPNGVGKSTFLKLLTGEIEPTIGERSLNHRIKLGKYNQHSGDQLNMKETPVEYLRRLFN 446
VGPNGVGKST L LLTG++ PT GE NHR+K+G +NQ +QL+M+ETP EYL+R FN
Sbjct: 651 VGPNGVGKSTLLLLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGFN 710
Query: 447 LGYQDARQNLGRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLE 626
L YQDAR+ LGRFGLESHAH I LSGGQ+ARV FA+LA +PD+LILDEPTNNLD+E
Sbjct: 711 LPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIE 770
Query: 627 SIEALCKAIEQYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRKEVLNALN 806
SI+AL +AI +Y+G V+VV+HD RLI +T+C LWVVE +++ +IDG+FDDY++EVL AL
Sbjct: 771 SIDALGEAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALG 830
Query: 807 EEISN 821
E + N
Sbjct: 831 EVMVN 835
Score = 74.3 bits (181), Expect = 4e-13
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 31/230 (13%)
Frame = +3
Query: 189 FAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFLKLLTGE---IEPTIGE------ 341
F+ S +LF D + R +VGPNG GK+T LK + I P I
Sbjct: 303 FSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 362
Query: 342 -------------RSLNHRIKLGKYNQHSGDQLNM-KETPVEYLRRLFN--------LGY 455
R+ R++L + + QL +T E L +++
Sbjct: 363 VVADETPAVQAVLRADTKRLRLLEEEKRLQGQLEQGDDTAAEKLEKVYEELRATGAAAAE 422
Query: 456 QDARQNLGRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIE 635
AR+ L G + P SGG R RV+ A+ +P LL+LDEPTN+LDL ++
Sbjct: 423 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 482
Query: 636 ALCKAIEQYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRK 785
L ++ + +++V+HD+ + + ++ + + G + ++K
Sbjct: 483 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKK 532
>sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1
Length = 807
Score = 301 bits (772), Expect = 1e-81
Identities = 154/269 (57%), Positives = 196/269 (72%)
Frame = +3
Query: 3 AEKKQKENLSXXXXXXXXXXXXXXXXIGPTELLEKPKEYQVKFDFPNPQKLSGSILSLTN 182
AEK+ KE L+ P ELL++PKEY V+F FP+P LS +L L
Sbjct: 533 AEKQTKEALTRKQQKCRRKNQDEESQEAP-ELLKRPKEYTVRFTFPDPPPLSPPVLGLHG 591
Query: 183 VSFAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFLKLLTGEIEPTIGERSLNHRI 362
V+F Y + LF +DFG+DM+SR+ IVGPNGVGKST L LLTG++ PT GE NHR+
Sbjct: 592 VTFGY-EGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGEMRKNHRL 650
Query: 363 KLGKYNQHSGDQLNMKETPVEYLRRLFNLGYQDARQNLGRFGLESHAHEIPNSSLSGGQR 542
K+G +NQ +QL M+ETP EYL+R FNL YQDAR+ LGRFGLESHAH I LSGGQ+
Sbjct: 651 KIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQK 710
Query: 543 ARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIEQYEGGVVVVTHDERLIRQTDCS 722
ARV FA+LA +PD+LILDEPTNNLD+ESI+AL +AI +Y+G V+VV+HD RLI +T+C
Sbjct: 711 ARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITETNCQ 770
Query: 723 LWVVENKNIFEIDGEFDDYRKEVLNALNE 809
LWVVE +++ +IDG+FDDY++EVL AL E
Sbjct: 771 LWVVEEQSVSQIDGDFDDYKREVLEALGE 799
Score = 73.6 bits (179), Expect = 7e-13
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 31/230 (13%)
Frame = +3
Query: 189 FAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFLKLLTGE---IEPTIGE------ 341
F+ S +LF D + R +VGPNG GK+T LK + I P I
Sbjct: 271 FSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 330
Query: 342 -------------RSLNHRIKLGKYNQHSGDQLNM-KETPVEYLRRLFN--------LGY 455
R+ R+KL + + QL +T + L +++
Sbjct: 331 VVADETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAADRLEKVYEELRATGAAAAE 390
Query: 456 QDARQNLGRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIE 635
AR+ L G + P SGG R RV+ A+ +P LL+LDEPTN+LDL ++
Sbjct: 391 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 450
Query: 636 ALCKAIEQYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRK 785
L ++ + +++V+HD+ + + ++ + + G + ++K
Sbjct: 451 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKK 500
>sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50)
(TNF-alpha-stimulated ABC protein)
Length = 845
Score = 300 bits (768), Expect = 4e-81
Identities = 153/269 (56%), Positives = 196/269 (72%)
Frame = +3
Query: 3 AEKKQKENLSXXXXXXXXXXXXXXXXIGPTELLEKPKEYQVKFDFPNPQKLSGSILSLTN 182
AEK+ KE L+ P ELL++PKEY V+F FP+P LS +L L
Sbjct: 571 AEKQTKEALTRKQQKCRRKNQDEESQEAP-ELLKRPKEYTVRFTFPDPPPLSPPVLGLHG 629
Query: 183 VSFAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFLKLLTGEIEPTIGERSLNHRI 362
V+F Y + LF +DFG+DM+SR+ IVGPNGVGKST L LLTG++ PT GE NHR+
Sbjct: 630 VTFGY-QGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRL 688
Query: 363 KLGKYNQHSGDQLNMKETPVEYLRRLFNLGYQDARQNLGRFGLESHAHEIPNSSLSGGQR 542
K+G +NQ +QL M+ETP EYL+R FNL YQDAR+ LGRFGLESHAH I LSGGQ+
Sbjct: 689 KIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQK 748
Query: 543 ARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIEQYEGGVVVVTHDERLIRQTDCS 722
ARV FA+LA +PD+LILDEPTNNLD+ESI+AL +AI +Y+G V+VV+HD RLI +T+C
Sbjct: 749 ARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITETNCQ 808
Query: 723 LWVVENKNIFEIDGEFDDYRKEVLNALNE 809
LWVVE +++ +IDG+F+DY++EVL AL E
Sbjct: 809 LWVVEEQSVSQIDGDFEDYKREVLEALGE 837
Score = 74.7 bits (182), Expect = 3e-13
Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 31/230 (13%)
Frame = +3
Query: 189 FAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFLKLLTGE---IEPTIGE------ 341
F+ S +LF D + R +VGPNG GK+T LK + I P I
Sbjct: 309 FSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 368
Query: 342 -------------RSLNHRIKLGKYNQHSGDQLNM-KETPVEYLRRLFN--------LGY 455
R+ R+KL + + QL +T E L +++
Sbjct: 369 VVADETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAAERLEKVYEELRATGAAAAE 428
Query: 456 QDARQNLGRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIE 635
AR+ L G + P SGG R RV+ A+ +P LL+LDEPTN+LDL ++
Sbjct: 429 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 488
Query: 636 ALCKAIEQYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRK 785
L ++ + +++V+HD+ + + ++ + + G + ++K
Sbjct: 489 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKK 538
>sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50)
Length = 807
Score = 300 bits (768), Expect = 4e-81
Identities = 153/269 (56%), Positives = 196/269 (72%)
Frame = +3
Query: 3 AEKKQKENLSXXXXXXXXXXXXXXXXIGPTELLEKPKEYQVKFDFPNPQKLSGSILSLTN 182
AEK+ KE L+ P ELL++PKEY V+F FP+P LS +L L
Sbjct: 533 AEKQTKEALTRKQQKCRRKNQDEESQEAP-ELLKRPKEYTVRFTFPDPPPLSPPVLGLHG 591
Query: 183 VSFAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFLKLLTGEIEPTIGERSLNHRI 362
V+F Y + LF +DFG+DM+SR+ IVGPNGVGKST L LLTG++ PT GE NHR+
Sbjct: 592 VTFGY-EGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRL 650
Query: 363 KLGKYNQHSGDQLNMKETPVEYLRRLFNLGYQDARQNLGRFGLESHAHEIPNSSLSGGQR 542
K+G +NQ +QL M+ETP EYL+R FNL YQDAR+ LGRFGLESHAH I LSGGQ+
Sbjct: 651 KIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQK 710
Query: 543 ARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIEQYEGGVVVVTHDERLIRQTDCS 722
ARV FA+LA +PD+LILDEPTNNLD+ESI+AL +AI +Y+G V+VV+HD RLI +T+C
Sbjct: 711 ARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITETNCQ 770
Query: 723 LWVVENKNIFEIDGEFDDYRKEVLNALNE 809
LWVVE +++ +IDG+F+DY++EVL AL E
Sbjct: 771 LWVVEEQSVSQIDGDFEDYKREVLEALGE 799
Score = 75.1 bits (183), Expect = 3e-13
Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 31/230 (13%)
Frame = +3
Query: 189 FAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFLKLLTGE---IEPTIGE------ 341
F+ S +LF D + + R +VGPNG GK+T LK + I P I
Sbjct: 271 FSISAHGKELFVNADLYIVASRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 330
Query: 342 -------------RSLNHRIKLGKYNQHSGDQLNM-KETPVEYLRRLFN--------LGY 455
R+ R+KL + + QL +T E L +++
Sbjct: 331 VVADETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAAERLEKVYEELRATGAAAAE 390
Query: 456 QDARQNLGRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIE 635
AR+ L G + P SGG R RV+ A+ +P LL+LDEPTN+LDL ++
Sbjct: 391 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 450
Query: 636 ALCKAIEQYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRK 785
L ++ + +++V+HD+ + + ++ + + G + ++K
Sbjct: 451 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKK 500
>sp|P40024|YEM6_YEAST Probable ATP-dependent transporter YER036C
Length = 610
Score = 192 bits (489), Expect = 8e-49
Identities = 100/225 (44%), Positives = 152/225 (67%), Gaps = 4/225 (1%)
Frame = +3
Query: 129 FDFPNPQKLSGSILSLTNVSFAY-SKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFLK 305
F FP ++L +L+ ++SF Y S S +L+ ++FGVDM+SR+++VGPNGVGKST LK
Sbjct: 380 FRFPQVERLPPPVLAFDDISFHYESNPSENLYEHLNFGVDMDSRIALVGPNGVGKSTLLK 439
Query: 306 LLTGEIEPTIGERSLNHRIKLGKYNQHSGDQLNMKETPVEYLRRLFNLGYQDA---RQNL 476
++TGE+ P G S + +KLG Y+QHS DQL++ ++ +E++R ++ QD R L
Sbjct: 440 IMTGELTPQSGRVSRHTHVKLGVYSQHSQDQLDLTKSALEFVRDKYSNISQDFQFWRGQL 499
Query: 477 GRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIE 656
GR+GL + ++LS GQR+RV FA LAL +P++L+LDEPTN LD+ +I++L AI
Sbjct: 500 GRYGLTGEGQTVQMATLSEGQRSRVVFALLALEQPNVLLLDEPTNGLDIPTIDSLADAIN 559
Query: 657 QYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRKEV 791
++ GGVVVV+HD RL+ + ++VVENK DG Y+ ++
Sbjct: 560 EFNGGVVVVSHDFRLLDKIAQDIFVVENKTATRWDGSILQYKNKL 604
Score = 60.8 bits (146), Expect = 5e-09
Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 41/247 (16%)
Frame = +3
Query: 231 DFGVDMN--SRVSIVGPNGVGKSTFLK----------------LLTGEIEPT------IG 338
D G+++N R ++G NG GKSTFLK LL EP+
Sbjct: 99 DSGLELNYGRRYGLLGENGCGKSTFLKALATREYPIPEHIDIYLLDEPAEPSELSALDYV 158
Query: 339 ERSLNHRIK-----LGKYNQHSGDQLNMKETPVEYLRRLFNLGYQDARQNLGRFGLESHA 503
H +K + K G + + E E + L ++ +R + GL +
Sbjct: 159 VTEAQHELKRIEDLVEKTILEDGPESELLEPLYERMDSLDPDTFE-SRAAIILIGLGFNK 217
Query: 504 HEI--PNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIEQYEGGVV 677
I +SGG + RVA A+ KP LL+LD+PT +LDLE+ L + +++++ +V
Sbjct: 218 KTILKKTKDMSGGWKMRVALAKALFVKPTLLLLDDPTAHLDLEACVWLEEYLKRFDRTLV 277
Query: 678 VVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRK----------EVLNALNEEISNPS 827
+V+H + + ++ + + + G +D Y K + N EEI +
Sbjct: 278 LVSHSQDFLNGVCTNMIDMRAQKLTAYGGNYDSYHKTRSELETNQMKQYNKQQEEIQHIK 337
Query: 828 AVAAAAG 848
A+AG
Sbjct: 338 KFIASAG 344
>sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F member 2 (Iron-inhibited ABC
transporter 2)
Length = 623
Score = 186 bits (472), Expect = 8e-47
Identities = 93/232 (40%), Positives = 151/232 (65%), Gaps = 2/232 (0%)
Frame = +3
Query: 123 VKFDFPNPQKLSGSILSLTNVSFAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFL 302
+ F FP K+ ++ + NVSF Y+K ++ ++FG+D+++RV++VGPNG GKST L
Sbjct: 381 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 440
Query: 303 KLLTGEIEPTIGERSLNHRIKLGKYNQHSGDQLNMKETPVEYLRRLFN--LGYQDARQNL 476
KLLTGE+ PT G + +K+G+Y+QH +QL++ +P+EY+ + + ++ R+ +
Sbjct: 441 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKII 500
Query: 477 GRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIE 656
GR+GL P +LS GQ+ RV A LA P +L LDEPTN+LD+E+I+AL AI
Sbjct: 501 GRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAIN 560
Query: 657 QYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRKEVLNALNEE 812
++EGG+++V+HD RLI+Q +WV E + I + G+ Y++ + + L +E
Sbjct: 561 EFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKLVDE 612
Score = 60.5 bits (145), Expect = 7e-09
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 30/215 (13%)
Frame = +3
Query: 231 DFGVDMNS--RVSIVGPNGVGKSTFLKL----------------LTGEIEPTIGERSLNH 356
D +++NS R ++G NG+GKS L LT E+ P+ +++ H
Sbjct: 103 DTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPS--DKTPLH 160
Query: 357 --------RIKLGKYNQHSGDQLNMKETPVEYLRRLFNLGYQDARQNLGRF----GLESH 500
R L K + + E +E RL L A R G
Sbjct: 161 CVMEVDTERAMLEKEAERLAHEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPA 220
Query: 501 AHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIEQYEGGVVV 680
SGG R RVA A+ +P +L+LDEPTN+LDL++ L + ++ ++ +V+
Sbjct: 221 MQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVL 280
Query: 681 VTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRK 785
V+H + + ++ + NK + G +D Y K
Sbjct: 281 VSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVK 315
>sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2
Length = 628
Score = 186 bits (472), Expect = 8e-47
Identities = 93/232 (40%), Positives = 151/232 (65%), Gaps = 2/232 (0%)
Frame = +3
Query: 123 VKFDFPNPQKLSGSILSLTNVSFAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFL 302
+ F FP K+ ++ + NVSF Y+K ++ ++FG+D+++RV++VGPNG GKST L
Sbjct: 386 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 445
Query: 303 KLLTGEIEPTIGERSLNHRIKLGKYNQHSGDQLNMKETPVEYLRRLFN--LGYQDARQNL 476
KLLTGE+ PT G + +K+G+Y+QH +QL++ +P+EY+ + + ++ R+ +
Sbjct: 446 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKII 505
Query: 477 GRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIE 656
GR+GL P +LS GQ+ RV A LA P +L LDEPTN+LD+E+I+AL AI
Sbjct: 506 GRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAIN 565
Query: 657 QYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRKEVLNALNEE 812
++EGG+++V+HD RLI+Q +WV E + I + G+ Y++ + + L +E
Sbjct: 566 EFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKLVDE 617
Score = 58.5 bits (140), Expect = 2e-08
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 28/213 (13%)
Frame = +3
Query: 231 DFGVDMNS--RVSIVGPNGVGKSTFLKLLTGEIEPTIGERSLNHRIKLGKYNQHSGDQLN 404
D +++NS R ++G NG+GKS L + P + H + ++ + Q
Sbjct: 108 DTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSEKTPLQCV 167
Query: 405 MK----------------------ETPVEYLRRLFNLGYQDARQNLGRF----GLESHAH 506
M+ E +E RL L A R G
Sbjct: 168 MEVDTERAMLEREAERLAHEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQ 227
Query: 507 EIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIEQYEGGVVVVT 686
SGG R RVA A+ +P +L+LDEPTN+LDL++ L + ++ ++ +V+V+
Sbjct: 228 RKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVS 287
Query: 687 HDERLIRQTDCSLWVVENKNIFEIDGEFDDYRK 785
H + + ++ + NK + G +D Y K
Sbjct: 288 HSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVK 320
>sp|P43535|GCN20_YEAST Protein GCN20
Length = 752
Score = 157 bits (398), Expect = 3e-38
Identities = 85/237 (35%), Positives = 142/237 (59%), Gaps = 2/237 (0%)
Frame = +3
Query: 96 LLEKPKEYQ-VKFDFPNPQKLSGSILSLTNVSFAYSKTSTDLFTKVDFGVDMNSRVSIVG 272
+LE P++ + + F FP KLS I+ L +VSF Y + + L V+ V M+SR+++VG
Sbjct: 507 VLEPPEQDKTIDFKFPECDKLSPPIIQLQDVSFGYDENNL-LLKDVNLDVQMDSRIALVG 565
Query: 273 PNGVGKSTFLKLLTGEIEPTIGERSLNHRIKLGKYNQHSGDQLNMKETPVEYLRRLF-NL 449
NG GK+T LK++ ++ P G S N R+++G + QH D +++ + V+++ + F
Sbjct: 566 ANGCGKTTLLKIMMEQLRPLKGFVSRNPRLRIGYFTQHHVDSMDLTTSAVDWMSKSFPGK 625
Query: 450 GYQDARQNLGRFGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLES 629
++ R++LG FG+ LSGGQ++RVAFA L L P +L+LDEP+N+LD
Sbjct: 626 TDEEYRRHLGSFGITGTLGLQKMQLLSGGQKSRVAFAALCLNNPHILVLDEPSNHLDTTG 685
Query: 630 IEALCKAIEQYEGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRKEVLNA 800
++AL +A++ + GGV++V+HD +I +WV E + +G DYR +L +
Sbjct: 686 LDALVEALKNFNGGVLMVSHDISVIDSVCKEIWVSEQGTVKRFEGTIYDYRDYILQS 742
Score = 64.3 bits (155), Expect = 5e-10
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +3
Query: 486 GLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIEQYE 665
G + A + P +S SGG R R++ A+ +PDLL+LDEP+N LD+ SI L + ++ Y
Sbjct: 355 GFSTEAQQQPTNSFSGGWRMRLSLARALFCQPDLLLLDEPSNMLDVPSIAYLAEYLKTYP 414
Query: 666 GGVVVVTHDERLIRQTDCSLWVVENKNIFEIDG-EFDDY 779
V+ V+HD + + + N+ + G +FD +
Sbjct: 415 NTVLTVSHDRAFLNEVATDIIYQHNERLDYYRGQDFDTF 453
>sp|P63390|YHES_ECO57 Hypothetical ABC transporter ATP-binding protein yheS
sp|P63389|YHES_ECOLI Hypothetical ABC transporter ATP-binding protein yheS
Length = 637
Score = 151 bits (382), Expect = 2e-36
Identities = 82/230 (35%), Positives = 130/230 (56%), Gaps = 1/230 (0%)
Frame = +3
Query: 126 KFDFPNPQKLSGSILSLTNVSFAYSKTSTDLFTKVDFGVDMNSRVSIVGPNGVGKSTFLK 305
+F F P+ L +L + VS Y + + + SR+ ++G NG GKST +K
Sbjct: 299 RFSFRAPESLPNPLLKMEKVSAGYGDRI--ILDSIKLNLVPGSRIGLLGRNGAGKSTLIK 356
Query: 306 LLTGEIEPTIGERSLNHRIKLGKYNQHSGDQLNMKETPVEYLRRLFNLGY-QDARQNLGR 482
LL GE+ P GE L IKLG + QH + L E+P+++L RL Q R LG
Sbjct: 357 LLAGELAPVSGEIGLAKGIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGG 416
Query: 483 FGLESHAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIEQY 662
FG + SGG++AR+ A + +P+LL+LDEPTN+LDL+ +AL +A+ ++
Sbjct: 417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIEF 476
Query: 663 EGGVVVVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRKEVLNALNEE 812
EG +VVV+HD L+R T L++V ++ + DG+ +DY++ + + +E
Sbjct: 477 EGALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQWLSDVQKQE 526
Score = 78.6 bits (192), Expect = 2e-14
Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 34/225 (15%)
Frame = +3
Query: 240 VDMNSRVSIVGPNGVGKSTFLKLLTGEIEPTIGERSLNHRIKLGKYNQHSGDQLNMKETP 419
++ +V +VG NG GKST L LL EI G + +L NQ + + +
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQETPA---LPQAA 80
Query: 420 VEYL------RRLFNLGYQDARQN----------------------------LGRFGLES 497
+EY+ R DA + L G +
Sbjct: 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSN 140
Query: 498 HAHEIPNSSLSGGQRARVAFAQLALTKPDLLILDEPTNNLDLESIEALCKAIEQYEGGVV 677
E P S SGG R R+ AQ + + DLL+LDEPTN+LDL+++ L K ++ Y+G ++
Sbjct: 141 EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLI 200
Query: 678 VVTHDERLIRQTDCSLWVVENKNIFEIDGEFDDYRKEVLNALNEE 812
+++HD + + +E +++FE G + + + L ++
Sbjct: 201 LISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEVQRATRLAQQ 245
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,528,383
Number of Sequences: 369166
Number of extensions: 1945715
Number of successful extensions: 10673
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10103
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9318621220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)