Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_J21
(920 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3Q4|HCN4_HUMAN Potassium/sodium hyperpolarization-act... 344 2e-94
sp|Q9TV66|HCN4_RABIT Potassium/sodium hyperpolarization-act... 344 2e-94
sp|Q9JKA7|HCN4_RAT Potassium/sodium hyperpolarization-activ... 343 4e-94
sp|O88703|HCN2_MOUSE Potassium/sodium hyperpolarization-act... 340 3e-93
sp|Q9JKA9|HCN2_RAT Potassium/sodium hyperpolarization-activ... 340 3e-93
sp|O88704|HCN1_MOUSE Potassium/sodium hyperpolarization-act... 339 6e-93
sp|Q9JKB0|HCN1_RAT Potassium/sodium hyperpolarization-activ... 339 6e-93
sp|Q9UL51|HCN2_HUMAN Potassium/sodium hyperpolarization-act... 339 6e-93
sp|Q9MZS1|HCN1_RABIT Potassium/sodium hyperpolarization-act... 339 7e-93
sp|O60741|HCN1_HUMAN Potassium/sodium hyperpolarization-act... 339 7e-93
>sp|Q9Y3Q4|HCN4_HUMAN Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated
channel 4
Length = 1203
Score = 344 bits (882), Expect = 2e-94
Identities = 162/276 (58%), Positives = 214/276 (77%)
Frame = +3
Query: 6 WVVKCKLQHSDWFEQYTWSLFKAMSHMLSIGYGRFPPTSISEAWTTIISMMTGATCYALF 185
WV + ++ W +QY+++LFKAMSHML IGYGR P +S+ W T++SM+ GATCYA+F
Sbjct: 450 WVSINNMVNNSWGKQYSYALFKAMSHMLCIGYGRQAPVGMSDVWLTMLSMIVGATCYAMF 509
Query: 186 VGHAAALIQSFDTSKRLYREKFKQVEEYMTYRKLPRALRQRIANYYEHRYQGKMFNEDQI 365
+GHA ALIQS D+S+R Y+EK+KQVE+YM++ KLP RQRI +YYEHRYQGKMF+E+ I
Sbjct: 510 IGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESI 569
Query: 366 LTELNECLREQVINYNCRALVAAVPFFTYADQSFVSEVVSKLMYEVFQPGDLIIKEGTIG 545
L EL+E LRE++IN+NCR LVA++P F AD +FV+ +++KL +EVFQPGD II+EGTIG
Sbjct: 570 LGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIG 629
Query: 546 TKMYFIQEGIVDIITKDGEVVTSLSDGSYFGEICLLTNAKRCATVRAEVYCSLYSLDSEQ 725
KMYFIQ G+V ++TK G T L+DGSYFGEICLLT +R A+VRA+ YC LYSL +
Sbjct: 630 KKMYFIQHGVVSVLTK-GNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDN 688
Query: 726 FKAVLENYPLMRRTMESVAAERLTKIGYNPDIITNR 833
F VLE YP+MRR E+VA +RL +IG I+ ++
Sbjct: 689 FNEVLEEYPMMRRAFETVALDRLDRIGKKNSILLHK 724
>sp|Q9TV66|HCN4_RABIT Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated
channel 4 (Hyperpolarization-activated cation channel 4)
(HAC-4)
Length = 1175
Score = 344 bits (882), Expect = 2e-94
Identities = 162/276 (58%), Positives = 214/276 (77%)
Frame = +3
Query: 6 WVVKCKLQHSDWFEQYTWSLFKAMSHMLSIGYGRFPPTSISEAWTTIISMMTGATCYALF 185
WV + ++ W +QY+++LFKAMSHML IGYGR P +S+ W T++SM+ GATCYA+F
Sbjct: 451 WVSLNNMVNNSWGKQYSYALFKAMSHMLCIGYGRQAPMGMSDVWLTMLSMIVGATCYAMF 510
Query: 186 VGHAAALIQSFDTSKRLYREKFKQVEEYMTYRKLPRALRQRIANYYEHRYQGKMFNEDQI 365
+GHA ALIQS D+S+R Y+EK+KQVE+YM++ KLP RQRI +YYEHRYQGKMF+E+ I
Sbjct: 511 IGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESI 570
Query: 366 LTELNECLREQVINYNCRALVAAVPFFTYADQSFVSEVVSKLMYEVFQPGDLIIKEGTIG 545
L EL+E LRE++IN+NCR LVA++P F AD +FV+ +++KL +EVFQPGD II+EGTIG
Sbjct: 571 LGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIG 630
Query: 546 TKMYFIQEGIVDIITKDGEVVTSLSDGSYFGEICLLTNAKRCATVRAEVYCSLYSLDSEQ 725
KMYFIQ G+V ++TK G T L+DGSYFGEICLLT +R A+VRA+ YC LYSL +
Sbjct: 631 KKMYFIQHGVVSVLTK-GNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDN 689
Query: 726 FKAVLENYPLMRRTMESVAAERLTKIGYNPDIITNR 833
F VLE YP+MRR E+VA +RL +IG I+ ++
Sbjct: 690 FNEVLEEYPMMRRAFETVALDRLDRIGKKNSILLHK 725
>sp|Q9JKA7|HCN4_RAT Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated
channel 4
Length = 1198
Score = 343 bits (880), Expect = 4e-94
Identities = 162/276 (58%), Positives = 214/276 (77%)
Frame = +3
Query: 6 WVVKCKLQHSDWFEQYTWSLFKAMSHMLSIGYGRFPPTSISEAWTTIISMMTGATCYALF 185
WV + ++ W +QY+++LFKAMSHML IGYGR P +S+ W T++SM+ GATCYA+F
Sbjct: 450 WVSINGMVNNSWGKQYSYALFKAMSHMLCIGYGRQAPVGMSDVWLTMLSMIVGATCYAMF 509
Query: 186 VGHAAALIQSFDTSKRLYREKFKQVEEYMTYRKLPRALRQRIANYYEHRYQGKMFNEDQI 365
+GHA ALIQS D+S+R Y+EK+KQVE+YM++ KLP RQRI +YYEHRYQGKMF+E+ I
Sbjct: 510 IGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESI 569
Query: 366 LTELNECLREQVINYNCRALVAAVPFFTYADQSFVSEVVSKLMYEVFQPGDLIIKEGTIG 545
L EL+E LRE++IN+NCR LVA++P F AD +FV+ +++KL +EVFQPGD II+EGTIG
Sbjct: 570 LGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIG 629
Query: 546 TKMYFIQEGIVDIITKDGEVVTSLSDGSYFGEICLLTNAKRCATVRAEVYCSLYSLDSEQ 725
KMYFIQ G+V ++TK G T L+DGSYFGEICLLT +R A+VRA+ YC LYSL +
Sbjct: 630 KKMYFIQHGVVSVLTK-GNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDN 688
Query: 726 FKAVLENYPLMRRTMESVAAERLTKIGYNPDIITNR 833
F VLE YP+MRR E+VA +RL +IG I+ ++
Sbjct: 689 FNEVLEEYPMMRRAFETVALDRLDRIGKKNSILLHK 724
>sp|O88703|HCN2_MOUSE Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated
channel 2 (Brain cyclic nucleotide gated channel 2)
(BCNG-2) (Hyperpolarization-activated cation channel 1)
(HAC-1)
Length = 863
Score = 340 bits (872), Expect = 3e-93
Identities = 161/276 (58%), Positives = 211/276 (76%)
Frame = +3
Query: 6 WVVKCKLQHSDWFEQYTWSLFKAMSHMLSIGYGRFPPTSISEAWTTIISMMTGATCYALF 185
WV + + W E Y+++LFKAMSHML IGYGR P S+++ W T++SM+ GATCYA+F
Sbjct: 372 WVSINNMVNHSWSELYSFALFKAMSHMLCIGYGRQAPESMTDIWLTMLSMIVGATCYAMF 431
Query: 186 VGHAAALIQSFDTSKRLYREKFKQVEEYMTYRKLPRALRQRIANYYEHRYQGKMFNEDQI 365
+GHA ALIQS D+S+R Y+EK+KQVE+YM++ KLP RQ+I +YYEHRYQGKMF+ED I
Sbjct: 432 IGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSI 491
Query: 366 LTELNECLREQVINYNCRALVAAVPFFTYADQSFVSEVVSKLMYEVFQPGDLIIKEGTIG 545
L ELN LRE+++N+NCR LVA++P F AD +FV+ +++KL +EVFQPGD II+EGTIG
Sbjct: 492 LGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIG 551
Query: 546 TKMYFIQEGIVDIITKDGEVVTSLSDGSYFGEICLLTNAKRCATVRAEVYCSLYSLDSEQ 725
KMYFIQ G+V ++TK G LSDGSYFGEICLLT +R A+VRA+ YC LYSL +
Sbjct: 552 KKMYFIQHGVVSVLTK-GNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDN 610
Query: 726 FKAVLENYPLMRRTMESVAAERLTKIGYNPDIITNR 833
F VLE YP+MRR E+VA +RL +IG I+ ++
Sbjct: 611 FNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLHK 646
>sp|Q9JKA9|HCN2_RAT Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated
channel 2
Length = 834
Score = 340 bits (872), Expect = 3e-93
Identities = 161/276 (58%), Positives = 211/276 (76%)
Frame = +3
Query: 6 WVVKCKLQHSDWFEQYTWSLFKAMSHMLSIGYGRFPPTSISEAWTTIISMMTGATCYALF 185
WV + + W E Y+++LFKAMSHML IGYGR P S+++ W T++SM+ GATCYA+F
Sbjct: 343 WVSINNMVNHSWSELYSFALFKAMSHMLCIGYGRQAPESMTDIWLTMLSMIVGATCYAMF 402
Query: 186 VGHAAALIQSFDTSKRLYREKFKQVEEYMTYRKLPRALRQRIANYYEHRYQGKMFNEDQI 365
+GHA ALIQS D+S+R Y+EK+KQVE+YM++ KLP RQ+I +YYEHRYQGKMF+ED I
Sbjct: 403 IGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSI 462
Query: 366 LTELNECLREQVINYNCRALVAAVPFFTYADQSFVSEVVSKLMYEVFQPGDLIIKEGTIG 545
L ELN LRE+++N+NCR LVA++P F AD +FV+ +++KL +EVFQPGD II+EGTIG
Sbjct: 463 LGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIG 522
Query: 546 TKMYFIQEGIVDIITKDGEVVTSLSDGSYFGEICLLTNAKRCATVRAEVYCSLYSLDSEQ 725
KMYFIQ G+V ++TK G LSDGSYFGEICLLT +R A+VRA+ YC LYSL +
Sbjct: 523 KKMYFIQHGVVSVLTK-GNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDN 581
Query: 726 FKAVLENYPLMRRTMESVAAERLTKIGYNPDIITNR 833
F VLE YP+MRR E+VA +RL +IG I+ ++
Sbjct: 582 FNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLHK 617
>sp|O88704|HCN1_MOUSE Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated
channel 1 (Brain cyclic nucleotide gated channel 1)
(BCNG-1) (Hyperpolarization-activated cation channel 2)
(HAC-2)
Length = 910
Score = 339 bits (870), Expect = 6e-93
Identities = 160/284 (56%), Positives = 217/284 (76%)
Frame = +3
Query: 6 WVVKCKLQHSDWFEQYTWSLFKAMSHMLSIGYGRFPPTSISEAWTTIISMMTGATCYALF 185
WV ++ + W +QY+++LFKAMSHML IGYG P S+S+ W T++SM+ GATCYA+F
Sbjct: 319 WVSLNEMVNDSWGKQYSYALFKAMSHMLCIGYGAQAPVSMSDLWITMLSMIVGATCYAMF 378
Query: 186 VGHAAALIQSFDTSKRLYREKFKQVEEYMTYRKLPRALRQRIANYYEHRYQGKMFNEDQI 365
VGHA ALIQS D+S+R Y+EK+KQVE+YM++ KLP +RQ+I +YYEHRYQGK+F+E+ I
Sbjct: 379 VGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIFDEENI 438
Query: 366 LTELNECLREQVINYNCRALVAAVPFFTYADQSFVSEVVSKLMYEVFQPGDLIIKEGTIG 545
L+ELN+ LRE+++N+NCR LVA +P F AD +FV+ ++SKL +EVFQPGD II+EG +G
Sbjct: 439 LSELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVG 498
Query: 546 TKMYFIQEGIVDIITKDGEVVTSLSDGSYFGEICLLTNAKRCATVRAEVYCSLYSLDSEQ 725
KMYFIQ G+ +ITK + + L+DGSYFGEICLLT +R A+VRA+ YC LYSL +
Sbjct: 499 KKMYFIQHGVAGVITKSSKEM-KLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDN 557
Query: 726 FKAVLENYPLMRRTMESVAAERLTKIGYNPDIITNREDFKDDLD 857
F VLE YP+MRR E+VA +RL +IG I+ + F+ DL+
Sbjct: 558 FNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLQK--FQKDLN 599
>sp|Q9JKB0|HCN1_RAT Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated
channel 1
Length = 910
Score = 339 bits (870), Expect = 6e-93
Identities = 160/284 (56%), Positives = 217/284 (76%)
Frame = +3
Query: 6 WVVKCKLQHSDWFEQYTWSLFKAMSHMLSIGYGRFPPTSISEAWTTIISMMTGATCYALF 185
WV ++ + W +QY+++LFKAMSHML IGYG P S+S+ W T++SM+ GATCYA+F
Sbjct: 319 WVSLNEMVNDSWGKQYSYALFKAMSHMLCIGYGAQAPVSMSDLWITMLSMIVGATCYAMF 378
Query: 186 VGHAAALIQSFDTSKRLYREKFKQVEEYMTYRKLPRALRQRIANYYEHRYQGKMFNEDQI 365
VGHA ALIQS D+S+R Y+EK+KQVE+YM++ KLP +RQ+I +YYEHRYQGK+F+E+ I
Sbjct: 379 VGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIFDEENI 438
Query: 366 LTELNECLREQVINYNCRALVAAVPFFTYADQSFVSEVVSKLMYEVFQPGDLIIKEGTIG 545
L+ELN+ LRE+++N+NCR LVA +P F AD +FV+ ++SKL +EVFQPGD II+EG +G
Sbjct: 439 LSELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVG 498
Query: 546 TKMYFIQEGIVDIITKDGEVVTSLSDGSYFGEICLLTNAKRCATVRAEVYCSLYSLDSEQ 725
KMYFIQ G+ +ITK + + L+DGSYFGEICLLT +R A+VRA+ YC LYSL +
Sbjct: 499 KKMYFIQHGVAGVITKSSKEM-KLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDN 557
Query: 726 FKAVLENYPLMRRTMESVAAERLTKIGYNPDIITNREDFKDDLD 857
F VLE YP+MRR E+VA +RL +IG I+ + F+ DL+
Sbjct: 558 FNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLQK--FQKDLN 599
>sp|Q9UL51|HCN2_HUMAN Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated
channel 2 (Brain cyclic nucleotide gated channel 2)
(BCNG-2)
Length = 889
Score = 339 bits (870), Expect = 6e-93
Identities = 161/276 (58%), Positives = 211/276 (76%)
Frame = +3
Query: 6 WVVKCKLQHSDWFEQYTWSLFKAMSHMLSIGYGRFPPTSISEAWTTIISMMTGATCYALF 185
WV + + W E Y+++LFKAMSHML IGYGR P S+++ W T++SM+ GATCYA+F
Sbjct: 399 WVSINGMVNHSWSELYSFALFKAMSHMLCIGYGRQAPESMTDIWLTMLSMIVGATCYAMF 458
Query: 186 VGHAAALIQSFDTSKRLYREKFKQVEEYMTYRKLPRALRQRIANYYEHRYQGKMFNEDQI 365
+GHA ALIQS D+S+R Y+EK+KQVE+YM++ KLP RQ+I +YYEHRYQGKMF+ED I
Sbjct: 459 IGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSI 518
Query: 366 LTELNECLREQVINYNCRALVAAVPFFTYADQSFVSEVVSKLMYEVFQPGDLIIKEGTIG 545
L ELN LRE+++N+NCR LVA++P F AD +FV+ +++KL +EVFQPGD II+EGTIG
Sbjct: 519 LGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIG 578
Query: 546 TKMYFIQEGIVDIITKDGEVVTSLSDGSYFGEICLLTNAKRCATVRAEVYCSLYSLDSEQ 725
KMYFIQ G+V ++TK G LSDGSYFGEICLLT +R A+VRA+ YC LYSL +
Sbjct: 579 KKMYFIQHGVVSVLTK-GNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDN 637
Query: 726 FKAVLENYPLMRRTMESVAAERLTKIGYNPDIITNR 833
F VLE YP+MRR E+VA +RL +IG I+ ++
Sbjct: 638 FNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLHK 673
>sp|Q9MZS1|HCN1_RABIT Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated
channel 1 (rbHCN1)
Length = 822
Score = 339 bits (869), Expect = 7e-93
Identities = 160/284 (56%), Positives = 216/284 (76%)
Frame = +3
Query: 6 WVVKCKLQHSDWFEQYTWSLFKAMSHMLSIGYGRFPPTSISEAWTTIISMMTGATCYALF 185
WV ++ + W +QY+++LFKAMSHML IGYG P S+S+ W T++SM+ GATCYA+F
Sbjct: 266 WVSLNEMVNDSWGKQYSYALFKAMSHMLCIGYGAQAPVSMSDLWITMLSMIVGATCYAMF 325
Query: 186 VGHAAALIQSFDTSKRLYREKFKQVEEYMTYRKLPRALRQRIANYYEHRYQGKMFNEDQI 365
VGHA ALIQS D+S+R Y+EK+KQVE+YM++ KLP +RQ+I +YYEHRYQGK+F+E+ I
Sbjct: 326 VGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIFDEENI 385
Query: 366 LTELNECLREQVINYNCRALVAAVPFFTYADQSFVSEVVSKLMYEVFQPGDLIIKEGTIG 545
L ELN+ LRE+++N+NCR LVA +P F AD +FV+ ++SKL +EVFQPGD II+EG +G
Sbjct: 386 LNELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVG 445
Query: 546 TKMYFIQEGIVDIITKDGEVVTSLSDGSYFGEICLLTNAKRCATVRAEVYCSLYSLDSEQ 725
KMYFIQ G+ +ITK + + L+DGSYFGEICLLT +R A+VRA+ YC LYSL +
Sbjct: 446 KKMYFIQHGVAGVITKSSKEM-KLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDN 504
Query: 726 FKAVLENYPLMRRTMESVAAERLTKIGYNPDIITNREDFKDDLD 857
F VLE YP+MRR E+VA +RL +IG I+ + F+ DL+
Sbjct: 505 FNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLQK--FQKDLN 546
>sp|O60741|HCN1_HUMAN Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated
channel 1 (Brain cyclic nucleotide gated channel 1)
(BCNG-1)
Length = 890
Score = 339 bits (869), Expect = 7e-93
Identities = 160/284 (56%), Positives = 216/284 (76%)
Frame = +3
Query: 6 WVVKCKLQHSDWFEQYTWSLFKAMSHMLSIGYGRFPPTSISEAWTTIISMMTGATCYALF 185
WV ++ + W +QY+++LFKAMSHML IGYG P S+S+ W T++SM+ GATCYA+F
Sbjct: 330 WVSLNEMVNDSWGKQYSYALFKAMSHMLCIGYGAQAPVSMSDLWITMLSMIVGATCYAMF 389
Query: 186 VGHAAALIQSFDTSKRLYREKFKQVEEYMTYRKLPRALRQRIANYYEHRYQGKMFNEDQI 365
VGHA ALIQS D+S+R Y+EK+KQVE+YM++ KLP +RQ+I +YYEHRYQGK+F+E+ I
Sbjct: 390 VGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIFDEENI 449
Query: 366 LTELNECLREQVINYNCRALVAAVPFFTYADQSFVSEVVSKLMYEVFQPGDLIIKEGTIG 545
L ELN+ LRE+++N+NCR LVA +P F AD +FV+ ++SKL +EVFQPGD II+EG +G
Sbjct: 450 LNELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVG 509
Query: 546 TKMYFIQEGIVDIITKDGEVVTSLSDGSYFGEICLLTNAKRCATVRAEVYCSLYSLDSEQ 725
KMYFIQ G+ +ITK + + L+DGSYFGEICLLT +R A+VRA+ YC LYSL +
Sbjct: 510 KKMYFIQHGVAGVITKSSKEM-KLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDN 568
Query: 726 FKAVLENYPLMRRTMESVAAERLTKIGYNPDIITNREDFKDDLD 857
F VLE YP+MRR E+VA +RL +IG I+ + F+ DL+
Sbjct: 569 FNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLQK--FQKDLN 610
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,011,603
Number of Sequences: 369166
Number of extensions: 1871318
Number of successful extensions: 5815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5673
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9414689480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)