Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_J15
(481 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O95817|BAG3_HUMAN BAG-family molecular chaperone regulat... 34 0.20
sp|Q8K3W3|CASC3_MOUSE Cancer susceptibility candidate gene ... 34 0.20
sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyp... 33 0.44
sp|Q91YD9|WASL_MOUSE Neural Wiskott-Aldrich syndrome protei... 33 0.44
sp|P48634|BAT2_HUMAN Large proline-rich protein BAT2 (HLA-B... 32 0.58
sp|Q5TM26|BAT2_MACMU Large proline-rich protein BAT2 (HLA-B... 32 0.58
sp|Q95107|WASL_BOVIN Neural Wiskott-Aldrich syndrome protei... 32 0.58
sp|Q13905|RPGF1_HUMAN Rap guanine nucleotide exchange facto... 32 0.58
sp|O43670|ZN207_HUMAN Zinc finger protein 207 32 0.75
sp|P08012|PRP1_SOYBN Repetitive proline-rich cell wall prot... 32 0.98
>sp|O95817|BAG3_HUMAN BAG-family molecular chaperone regulator-3 (BCL-2 binding
athanogene-3) (BAG-3) (Bcl-2-binding protein Bis)
(Docking protein CAIR-1)
Length = 575
Score = 33.9 bits (76), Expect = 0.20
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = +2
Query: 185 DLNVSTTLPVQTPYSPQAVPSRLGEG------GHMVPPFLRPGFRNPPMI-RGRVYRAPM 343
D V + P +TP S PSR G GH V P LRPG+ P++ G R
Sbjct: 51 DPRVPSEGPKETPSSANG-PSREGSRLPPAREGHPVYPQLRPGYIPIPVLHEGAENRQVH 109
Query: 344 RFSRHPPPGFPAFRPNIISRPP 409
F +P PG FR + P
Sbjct: 110 PFHVYPQPGMQRFRTEAAAAAP 131
>sp|Q8K3W3|CASC3_MOUSE Cancer susceptibility candidate gene 3 protein (Metastatic lymph
node protein 51) (MLN 51 protein) (Barentsz protein)
(Btz)
Length = 697
Score = 33.9 bits (76), Expect = 0.20
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 221 PYSPQAVPSRLGEGGHMVPPFLRPGFRNPPMIRGRV-YRAPMRFSRHPPPGFPAFRPNII 397
PY+P A+P PP L P + PP + G V Y P + P P P P +
Sbjct: 631 PYAPGALPPP--------PPHLYPNTQAPPQVYGGVTYYNPAQQQVQPKPSPPRRTPQPV 682
Query: 398 S-RPPAP 415
S +PP P
Sbjct: 683 SIKPPPP 689
>sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyproline-rich glycoprotein)
Length = 620
Score = 32.7 bits (73), Expect = 0.44
Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 22/106 (20%)
Frame = +2
Query: 164 PSSASLEDLNVSTTLPVQTPY--SPQAVPSRLGEGGHMVPP----FLRPGFRNPPMIRGR 325
PSS L + TT P + SP+ P R H PP L P PP RG
Sbjct: 44 PSSIGLSPPSAPTTTPPSRGHVPSPRHAPPR-----HAYPPPSHGHLPPSVGGPPPHRGH 98
Query: 326 VYRA--------PMRFSRHPPPGF--------PAFRPNIISRPPAP 415
+ + P+ HPPP + P P+ RPP+P
Sbjct: 99 LPPSRGFNPPPSPVISPSHPPPSYGAPPPSHGPGHLPSHGQRPPSP 144
>sp|Q91YD9|WASL_MOUSE Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 501
Score = 32.7 bits (73), Expect = 0.44
Identities = 22/69 (31%), Positives = 27/69 (39%)
Frame = +2
Query: 209 PVQTPYSPQAVPSRLGEGGHMVPPFLRPGFRNPPMIRGRVYRAPMRFSRHPPPGFPAFRP 388
P + +P PSR PP RPG PP R+Y PPP P+ P
Sbjct: 300 PARGRGAPPPPPSRAPTAAPPPPPPSRPGVVVPPPPPNRMYPP-------PPPALPSSAP 352
Query: 389 NIISRPPAP 415
+ PP P
Sbjct: 353 SGPPPPPPP 361
>sp|P48634|BAT2_HUMAN Large proline-rich protein BAT2 (HLA-B-associated transcript 2)
Length = 2157
Score = 32.3 bits (72), Expect = 0.58
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 224 YSPQAVPSRLGEGGHMVPPFLRPGFRNPPMIRGRVYRAPMRFSRHP-PPGFPAFRPNIIS 400
++P+ VPSR G GG PP + PG+ P AP + P PP + +I
Sbjct: 1161 FTPRGVPSRRGRGGGRPPPQVCPGWSPPAK-----SLAPKKPPTGPLPPSKEPLKEKLIP 1215
Query: 401 RPPAP 415
P +P
Sbjct: 1216 GPLSP 1220
>sp|Q5TM26|BAT2_MACMU Large proline-rich protein BAT2 (HLA-B-associated transcript 2)
Length = 2160
Score = 32.3 bits (72), Expect = 0.58
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 224 YSPQAVPSRLGEGGHMVPPFLRPGFRNPPMIRGRVYRAPMRFSRHP-PPGFPAFRPNIIS 400
++P+ VPSR G GG PP + PG+ P AP + P PP + +I
Sbjct: 1164 FTPRGVPSRRGRGGGRPPPQVCPGWSPPAK-----SLAPKKPPTGPLPPSKEPLKEKLIP 1218
Query: 401 RPPAP 415
P +P
Sbjct: 1219 GPLSP 1223
>sp|Q95107|WASL_BOVIN Neural Wiskott-Aldrich syndrome protein (N-WASP)
Length = 505
Score = 32.3 bits (72), Expect = 0.58
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Frame = +2
Query: 209 PVQTPYSPQAVPSRLGEGGHMVPPFLRPGFRNPPMIRGRVYRAPMRF------SRHPPPG 370
P + +P PSR PP RPG PP R+Y P+ S PPP
Sbjct: 303 PARGRGAPPPPPSRAPTAAPPPPPPSRPGVGAPPPPPNRMYPPPLPALPSSAPSGPPPPP 362
Query: 371 FPAFRPNIISRPPAP 415
P ++ PP P
Sbjct: 363 PPLSVSGSVAPPPPP 377
>sp|Q13905|RPGF1_HUMAN Rap guanine nucleotide exchange factor 1 (Guanine
nucleotide-releasing factor 2) (C3G protein) (CRK
SH3-binding GNRP)
Length = 1077
Score = 32.3 bits (72), Expect = 0.58
Identities = 23/77 (29%), Positives = 31/77 (40%)
Frame = +2
Query: 182 EDLNVSTTLPVQTPYSPQAVPSRLGEGGHMVPPFLRPGFRNPPMIRGRVYRAPMRFSRHP 361
+DL+ + +P QT ++ +P LGE G PFL P F+ P HP
Sbjct: 395 QDLSNADQIPQQTAWNLSPLPESLGESG---SPFLGPPFQLP-------------LGGHP 438
Query: 362 PPGFPAFRPNIISRPPA 412
P P PPA
Sbjct: 439 QPDGPLAPGQQTDTPPA 455
>sp|O43670|ZN207_HUMAN Zinc finger protein 207
Length = 478
Score = 32.0 bits (71), Expect = 0.75
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Frame = +2
Query: 194 VSTTLPVQTPYSPQAVPSRLGEGGHMVPPFLRPGFRNPPMIRGRVYRAPMRFSRHPPPGF 373
V +P P P P + GG M+PP PG PP++ G P P PG
Sbjct: 167 VPPLMPGMPPVMPGMPPGMMPMGG-MMPP--GPGI--PPLMPGMPPGMPPPV---PRPGI 218
Query: 374 PAFR-------PNIISRPPAP 415
P P I++RPPAP
Sbjct: 219 PPMTQAQAVSAPGILNRPPAP 239
>sp|P08012|PRP1_SOYBN Repetitive proline-rich cell wall protein 1 precursor
Length = 256
Score = 31.6 bits (70), Expect = 0.98
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +2
Query: 209 PVQTP--YSPQAVPSRLGEGGHMVPPFLRPGFRNPPMIRGRVYRAPMRFSRHPPPGFPAF 382
PV P Y P + + PP +P PP+ + VY+ P+ PP P
Sbjct: 182 PVYKPPVYKPPVYKPPVEKPPIYKPPVYKPPIEKPPVYKPPVYKPPV---YKPPVYKPPV 238
Query: 383 RPNIISRPPAPRF 421
+ I +PP P++
Sbjct: 239 KKPPIYKPPYPKY 251
Score = 28.5 bits (62), Expect = 8.3
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 275 PPFLRPGFRNPPMIRGRVYRAPMRFSRHPPPGF--PAFRPNIISRP 406
PP +P PP+ + VY+ P+ + PP + P ++P + P
Sbjct: 106 PPVYKPPIEKPPVYKPPVYKPPV----YKPPVYKPPVYKPPVYKPP 147
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,651,238
Number of Sequences: 369166
Number of extensions: 1525452
Number of successful extensions: 4634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4480
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)