Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_I19
(289 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P83917|CBX1_MOUSE Chromobox protein homolog 1 (Heterochr... 74 1e-13
sp|Q61686|CBX5_MOUSE Chromobox protein homolog 5 (Heterochr... 70 2e-12
sp|P45973|CBX5_HUMAN Chromobox protein homolog 5 (Heterochr... 69 4e-12
sp|Q5R6X7|CBX3_PONPY Chromobox protein homolog 3 (Heterochr... 66 3e-11
sp|P23198|CBX3_MOUSE Chromobox protein homolog 3 (Heterochr... 66 3e-11
sp|Q13185|CBX3_HUMAN Chromobox protein homolog 3 (Heterochr... 66 3e-11
sp|P29227|HP1_DROVI Heterochromatin protein 1 (HP1) 50 2e-06
sp|P05205|HP1_DROME Heterochromatin protein 1 (HP1) (Nonhis... 45 7e-05
sp|P40381|SWI6_SCHPO Chromatin-associated swi6 protein 31 0.77
sp|Q68XT0|GIDA_RICTY tRNA uridine 5-carboxymethylaminomethy... 30 1.7
>sp|P83917|CBX1_MOUSE Chromobox protein homolog 1 (Heterochromatin protein 1 homolog
beta) (HP1 beta) (Modifier 1 protein) (M31)
(Heterochromatin protein p25)
sp|P83916|CBX1_HUMAN Chromobox protein homolog 1 (Heterochromatin protein 1 homolog
beta) (HP1 beta) (Modifier 1 protein) (M31)
(Heterochromatin protein p25) (HP1Hsbeta) (p25beta)
Length = 185
Score = 73.9 bits (180), Expect = 1e-13
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = +2
Query: 65 INWKNSEEADLVPAREANVKCPQVVIKFYEERLTWHTPTNATTNEK 202
+ WKNS+EADLVPA+EANVKCPQVVI FYEERLTWH+ + ++K
Sbjct: 136 MKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKK 181
Score = 31.6 bits (70), Expect = 0.59
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -2
Query: 72 QLMFLIKWKNSEEAD 28
+LMFL+KWKNS+EAD
Sbjct: 131 ELMFLMKWKNSDEAD 145
>sp|Q61686|CBX5_MOUSE Chromobox protein homolog 5 (Heterochromatin protein 1 homolog
alpha) (HP1 alpha)
Length = 191
Score = 69.7 bits (169), Expect = 2e-12
Identities = 32/50 (64%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Frame = +2
Query: 65 INWKNSEEADLVPAREANVKCPQVVIKFYEERLTWHT-PTNATTNEKVSS 211
+ WK+++EADLV A+EANVKCPQ+VI FYEERLTWH P +A EK S+
Sbjct: 140 MKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKESA 189
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 69 LMFLIKWKNSEEADFPFNKK 10
LMFL+KWK+++EAD K+
Sbjct: 136 LMFLMKWKDTDEADLVLAKE 155
>sp|P45973|CBX5_HUMAN Chromobox protein homolog 5 (Heterochromatin protein 1 homolog
alpha) (HP1 alpha) (Antigen p25)
Length = 191
Score = 68.6 bits (166), Expect = 4e-12
Identities = 31/47 (65%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = +2
Query: 65 INWKNSEEADLVPAREANVKCPQVVIKFYEERLTWHT-PTNATTNEK 202
+ WK+++EADLV A+EANVKCPQ+VI FYEERLTWH P +A EK
Sbjct: 140 MKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEK 186
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 69 LMFLIKWKNSEEADFPFNKK 10
LMFL+KWK+++EAD K+
Sbjct: 136 LMFLMKWKDTDEADLVLAKE 155
>sp|Q5R6X7|CBX3_PONPY Chromobox protein homolog 3 (Heterochromatin protein 1 homolog
gamma) (HP1 gamma)
Length = 183
Score = 65.9 bits (159), Expect = 3e-11
Identities = 27/37 (72%), Positives = 34/37 (91%)
Frame = +2
Query: 65 INWKNSEEADLVPAREANVKCPQVVIKFYEERLTWHT 175
+ WK+S+EADLV A+EAN+KCPQ+VI FYEERLTWH+
Sbjct: 140 MKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHS 176
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -2
Query: 72 QLMFLIKWKNSEEADFPFNKK 10
+LMFL+KWK+S+EAD K+
Sbjct: 135 ELMFLMKWKDSDEADLVLAKE 155
>sp|P23198|CBX3_MOUSE Chromobox protein homolog 3 (Heterochromatin protein 1 homolog
gamma) (HP1 gamma) (Modifier 2 protein) (M32)
Length = 183
Score = 65.9 bits (159), Expect = 3e-11
Identities = 27/37 (72%), Positives = 34/37 (91%)
Frame = +2
Query: 65 INWKNSEEADLVPAREANVKCPQVVIKFYEERLTWHT 175
+ WK+S+EADLV A+EAN+KCPQ+VI FYEERLTWH+
Sbjct: 140 MKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHS 176
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -2
Query: 72 QLMFLIKWKNSEEADFPFNKK 10
+LMFL+KWK+S+EAD K+
Sbjct: 135 ELMFLMKWKDSDEADLVLAKE 155
>sp|Q13185|CBX3_HUMAN Chromobox protein homolog 3 (Heterochromatin protein 1 homolog
gamma) (HP1 gamma) (Modifier 2 protein) (HECH)
Length = 183
Score = 65.9 bits (159), Expect = 3e-11
Identities = 27/37 (72%), Positives = 34/37 (91%)
Frame = +2
Query: 65 INWKNSEEADLVPAREANVKCPQVVIKFYEERLTWHT 175
+ WK+S+EADLV A+EAN+KCPQ+VI FYEERLTWH+
Sbjct: 140 MKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHS 176
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -2
Query: 72 QLMFLIKWKNSEEADFPFNKK 10
+LMFL+KWK+S+EAD K+
Sbjct: 135 ELMFLMKWKDSDEADLVLAKE 155
>sp|P29227|HP1_DROVI Heterochromatin protein 1 (HP1)
Length = 213
Score = 49.7 bits (117), Expect = 2e-06
Identities = 20/37 (54%), Positives = 31/37 (83%)
Frame = +2
Query: 65 INWKNSEEADLVPAREANVKCPQVVIKFYEERLTWHT 175
I +K ++A++VP+ ANVK PQ+VI+FYEERL+W++
Sbjct: 173 IQFKGVDQAEMVPSTVANVKIPQMVIRFYEERLSWYS 209
>sp|P05205|HP1_DROME Heterochromatin protein 1 (HP1) (Nonhistone chromosomal protein
C1A9 antigen)
Length = 206
Score = 44.7 bits (104), Expect = 7e-05
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +2
Query: 65 INWKNSEEADLVPAREANVKCPQVVIKFYEERLTWHT 175
I +K ++A++VP+ AN K P++VI FYEERL+W++
Sbjct: 166 IQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSWYS 202
>sp|P40381|SWI6_SCHPO Chromatin-associated swi6 protein
Length = 328
Score = 31.2 bits (69), Expect = 0.77
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 65 INWKNSEEADLVPAREANVKCPQVVIKFYEERLTW 169
+ WKN + P+ N KCPQ +++FYE LT+
Sbjct: 291 LTWKNGAISHH-PSTITNKKCPQKMLQFYESHLTF 324
>sp|Q68XT0|GIDA_RICTY tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
(Glucose-inhibited division protein A)
Length = 621
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 62 NINWKNSEEADLVPAREANVKCPQVVIKFYEERLTWHTPTNATTNEKVS 208
+IN SEE L+P K P + ++ +E+L++H PT ++S
Sbjct: 550 DINLFQSEEIQLIPKNIDYFKIPSISLEI-QEKLSYHKPTTIGVARRIS 597
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,956,893
Number of Sequences: 369166
Number of extensions: 460080
Number of successful extensions: 1002
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)