Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_I18
(816 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 (Testis-specific ... 184 2e-46
sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 (Testis-specific ... 182 1e-45
sp|O89112|LANC1_MOUSE LanC-like protein 1 (40 kDa erythrocy... 182 1e-45
sp|Q9QX69|LANC1_RAT LanC-like protein 1 (40 kDa erythrocyte... 179 6e-45
sp|O43813|LANC1_HUMAN LanC-like protein 1 (40 kDa erythrocy... 178 1e-44
sp|Q90ZL2|LANC1_BRARE LanC-like protein 1 174 2e-43
sp|Q7MLR5|SYC_VIBVY Cysteinyl-tRNA synthetase (Cysteine--tR... 32 2.7
sp|Q8D8R1|SYC_VIBVU Cysteinyl-tRNA synthetase (Cysteine--tR... 32 2.7
sp|P37609|LCN2_LACLA Lacticin 481/lactococcin biosynthesis ... 31 3.6
sp|Q03202|NISC_LACLA Nisin biosynthesis protein nisC 30 6.1
>sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 (Testis-specific adriamycin sensitivity
protein)
Length = 450
Score = 184 bits (468), Expect = 2e-46
Identities = 91/175 (52%), Positives = 116/175 (66%)
Frame = +1
Query: 205 EYVYPTIEFLSKLRLPSGNYPSSIGESSRRDVLVHWCHGAPGWIHMFIAAHKVIA*IRIY 384
E V P+I+++ + SGNYPSS+ S+ D LVHWCHGAPG IHM + A+KV
Sbjct: 287 EMVKPSIDYVRHKKFRSGNYPSSL--SNETDRLVHWCHGAPGVIHMLMQAYKV------- 337
Query: 385 STKF*S*VFKNSVFIDMAKEISEVIWKRGLLFKGCGICHGSAGNGYTFIALYQYTNELKY 564
FK ++ A E S+VIW+RGLL KG GICHG+AGNGY+F++LY+ T + KY
Sbjct: 338 --------FKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKY 389
Query: 565 LYQALMFAEWCTDYTKNRTREADRPYSLFEGLAGTLHFLVDCLDARNARFPIYEL 729
LY+A FAEWC DY + R DRPYSLFEG+AG +HFL D L +RFP +EL
Sbjct: 390 LYRACKFAEWCLDYGAHGCRIPDRPYSLFEGMAGAIHFLSDVLGPETSRFPAFEL 444
Score = 48.5 bits (114), Expect = 2e-05
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = +3
Query: 6 AIISSGVKLAKLRRNEIVNVPPLFYEWHGKAYLGGAHGFAGIMFMLLQ 149
AII SG L++ R PL Y+WH K Y+G AHG AGI +ML+Q
Sbjct: 230 AIIESGKTLSREERK--TERCPLLYQWHRKQYVGAAHGMAGIYYMLMQ 275
>sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 (Testis-specific adriamycin sensitivity
protein)
Length = 450
Score = 182 bits (462), Expect = 1e-45
Identities = 90/180 (50%), Positives = 119/180 (66%)
Frame = +1
Query: 205 EYVYPTIEFLSKLRLPSGNYPSSIGESSRRDVLVHWCHGAPGWIHMFIAAHKVIA*IRIY 384
E V P+I+++ + SGNYPSS+ S+ D LVHWCHGAPG IH+ + A++V
Sbjct: 287 EMVKPSIDYVRHKKFRSGNYPSSL--SNETDRLVHWCHGAPGVIHVLLQAYQV------- 337
Query: 385 STKF*S*VFKNSVFIDMAKEISEVIWKRGLLFKGCGICHGSAGNGYTFIALYQYTNELKY 564
FK ++ A E S+VIW+RGLL KG GICHG++GNGY+F++LY+ T + KY
Sbjct: 338 --------FKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTSGNGYSFLSLYRLTQDKKY 389
Query: 565 LYQALMFAEWCTDYTKNRTREADRPYSLFEGLAGTLHFLVDCLDARNARFPIYEL*YYQE 744
LY+A FAEWC DY + R DRPYSLFEG+AG +HFL D L ARFP +EL + Q+
Sbjct: 390 LYRACKFAEWCLDYGAHGCRIPDRPYSLFEGMAGAVHFLSDILVPETARFPAFELGFLQK 449
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = +3
Query: 6 AIISSGVKLAKLRRNEIVNVPPLFYEWHGKAYLGGAHGFAGIMFMLLQ 149
AII SG L++ R PL Y+WH K Y+G AHG AGI +ML+Q
Sbjct: 230 AIIESGKSLSREERKS--ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQ 275
>sp|O89112|LANC1_MOUSE LanC-like protein 1 (40 kDa erythrocyte membrane protein) (p40)
Length = 399
Score = 182 bits (461), Expect = 1e-45
Identities = 86/178 (48%), Positives = 120/178 (67%)
Frame = +1
Query: 196 RIFEYVYPTIEFLSKLRLPSGNYPSSIGESSRRDVLVHWCHGAPGWIHMFIAAHKVIA*I 375
++ V P+++F+ +L+ PSGNYP + ++ RD+LVHWCHGAPG I+M I A+KV
Sbjct: 239 KLHSLVKPSVDFVCRLKFPSGNYPPCLDDT--RDLLVHWCHGAPGVIYMLIQAYKV---- 292
Query: 376 RIYSTKF*S*VFKNSVFIDMAKEISEVIWKRGLLFKGCGICHGSAGNGYTFIALYQYTNE 555
FK ++ A++ ++VIW+ GLL KG G+CHG+AGN Y F+ALY T +
Sbjct: 293 -----------FKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNLTQD 341
Query: 556 LKYLYQALMFAEWCTDYTKNRTREADRPYSLFEGLAGTLHFLVDCLDARNARFPIYEL 729
LKYLY+A FAEWC DY ++ R AD P+SLFEG+AGT++FL D L A+FP +EL
Sbjct: 342 LKYLYRACKFAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 399
Score = 51.6 bits (122), Expect = 3e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +3
Query: 9 IISSGVKLAKLRRNEIVNVPPLFYEWHGKAYLGGAHGFAGIMFMLLQVYLDESLSEIHSS 188
I++SG L+ R+ + PL YEW+ + Y+G AHG AGI + L+Q L + ++HS
Sbjct: 186 ILTSGENLS--RKRNLAAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVNQGKLHSL 243
Query: 189 IKQDI 203
+K +
Sbjct: 244 VKPSV 248
>sp|Q9QX69|LANC1_RAT LanC-like protein 1 (40 kDa erythrocyte membrane protein) (p40)
Length = 399
Score = 179 bits (455), Expect = 6e-45
Identities = 85/178 (47%), Positives = 119/178 (66%)
Frame = +1
Query: 196 RIFEYVYPTIEFLSKLRLPSGNYPSSIGESSRRDVLVHWCHGAPGWIHMFIAAHKVIA*I 375
++ V P+++F+ +L+ PSGNYPS + ++ RD+LVHWCHGAPG I+M I A+KV
Sbjct: 239 KLHSLVKPSVDFVCQLKFPSGNYPSCLDDT--RDLLVHWCHGAPGVIYMLIQAYKV---- 292
Query: 376 RIYSTKF*S*VFKNSVFIDMAKEISEVIWKRGLLFKGCGICHGSAGNGYTFIALYQYTNE 555
FK ++ A++ ++VIW+ GLL KG G+CHG+AGN Y F+ALY T +
Sbjct: 293 -----------FKEEHYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNLTQD 341
Query: 556 LKYLYQALMFAEWCTDYTKNRTREADRPYSLFEGLAGTLHFLVDCLDARNARFPIYEL 729
KYLY+A FAEWC DY ++ R D P+SLFEG+AGT++FL D L A+FP +EL
Sbjct: 342 AKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 399
Score = 54.7 bits (130), Expect = 3e-07
Identities = 26/67 (38%), Positives = 40/67 (59%)
Frame = +3
Query: 3 KAIISSGVKLAKLRRNEIVNVPPLFYEWHGKAYLGGAHGFAGIMFMLLQVYLDESLSEIH 182
+ I++SG KL+ R+ PL YEW+ + Y+G AHG AGI + L+Q L S ++H
Sbjct: 184 ETILTSGEKLS--RKRNFTTKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLHVSQGKLH 241
Query: 183 SSIKQDI 203
S +K +
Sbjct: 242 SLVKPSV 248
>sp|O43813|LANC1_HUMAN LanC-like protein 1 (40 kDa erythrocyte membrane protein) (p40)
Length = 399
Score = 178 bits (452), Expect = 1e-44
Identities = 84/178 (47%), Positives = 118/178 (66%)
Frame = +1
Query: 196 RIFEYVYPTIEFLSKLRLPSGNYPSSIGESSRRDVLVHWCHGAPGWIHMFIAAHKVIA*I 375
++ V P+++++ +L+ PSGNYP IG++ RD+LVHWCHGAPG I+M I A+KV
Sbjct: 239 KLHSLVKPSVDYVCQLKFPSGNYPPCIGDN--RDLLVHWCHGAPGVIYMLIQAYKV---- 292
Query: 376 RIYSTKF*S*VFKNSVFIDMAKEISEVIWKRGLLFKGCGICHGSAGNGYTFIALYQYTNE 555
F+ ++ A + ++VIW+ GLL KG G+CHGSAGN Y F+ LY T +
Sbjct: 293 -----------FREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQD 341
Query: 556 LKYLYQALMFAEWCTDYTKNRTREADRPYSLFEGLAGTLHFLVDCLDARNARFPIYEL 729
+KYLY+A FAEWC +Y ++ R D P+SLFEG+AGT++FL D L ARFP +EL
Sbjct: 342 MKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL 399
Score = 53.5 bits (127), Expect = 7e-07
Identities = 26/67 (38%), Positives = 39/67 (58%)
Frame = +3
Query: 3 KAIISSGVKLAKLRRNEIVNVPPLFYEWHGKAYLGGAHGFAGIMFMLLQVYLDESLSEIH 182
+ I++SG LA R+ PL YEW+ + Y+G AHG AGI + L+Q L S ++H
Sbjct: 184 ETILTSGENLA--RKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLH 241
Query: 183 SSIKQDI 203
S +K +
Sbjct: 242 SLVKPSV 248
>sp|Q90ZL2|LANC1_BRARE LanC-like protein 1
Length = 405
Score = 174 bits (442), Expect = 2e-43
Identities = 83/178 (46%), Positives = 119/178 (66%)
Frame = +1
Query: 196 RIFEYVYPTIEFLSKLRLPSGNYPSSIGESSRRDVLVHWCHGAPGWIHMFIAAHKVIA*I 375
R+F V P++ ++ +L+ PSGNY +G++ RD+LVHWCHG+PG I+M I A KV +
Sbjct: 245 RVFSLVKPSVNYVCQLKFPSGNYAPCVGDA--RDLLVHWCHGSPGVIYMLIQAFKVFG-V 301
Query: 376 RIYSTKF*S*VFKNSVFIDMAKEISEVIWKRGLLFKGCGICHGSAGNGYTFIALYQYTNE 555
R Y ++ A + EVIW+RGLL KG G+CHG+AGN Y F+ALY+ T +
Sbjct: 302 RQY--------------LEDALQCGEVIWQRGLLKKGYGLCHGAAGNAYGFLALYKITQD 347
Query: 556 LKYLYQALMFAEWCTDYTKNRTREADRPYSLFEGLAGTLHFLVDCLDARNARFPIYEL 729
K+LY+A MFA+WC +Y ++ R D P+SLFEG+AGT++FL D L A+FP +E+
Sbjct: 348 PKHLYRACMFADWCMNYGRHGCRTPDTPFSLFEGMAGTIYFLADLLQPARAKFPCFEV 405
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/66 (37%), Positives = 39/66 (59%)
Frame = +3
Query: 6 AIISSGVKLAKLRRNEIVNVPPLFYEWHGKAYLGGAHGFAGIMFMLLQVYLDESLSEIHS 185
AI+ SG L++ RN+I + PL YEW+ + Y+G AHG +GI + L+Q L + S
Sbjct: 191 AILESGQILSQ--RNKIQDQSPLMYEWYQEEYVGAAHGLSGIYYYLMQPGLVAGQDRVFS 248
Query: 186 SIKQDI 203
+K +
Sbjct: 249 LVKPSV 254
>sp|Q7MLR5|SYC_VIBVY Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 460
Score = 31.6 bits (70), Expect = 2.7
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Frame = +1
Query: 493 ICHGSAGNGYTFIALYQYTNELKYLYQALMFAEWCTD----YTKNRTREADRPYSLFEGL 660
+CH G+G TF++ + L+YL L F TD K + SL E L
Sbjct: 35 LCH--IGHGRTFVSFDVVSRYLRYLGYDLTFVRNITDIDDKIIKRAAENGETCDSLTERL 92
Query: 661 AGTLHFLVDCLDARNARFPIYEL*YYQELI 750
G +H D L+ + Y QE+I
Sbjct: 93 IGEMHADFDALNMKRPDVEPRATQYIQEII 122
>sp|Q8D8R1|SYC_VIBVU Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 460
Score = 31.6 bits (70), Expect = 2.7
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Frame = +1
Query: 493 ICHGSAGNGYTFIALYQYTNELKYLYQALMFAEWCTD----YTKNRTREADRPYSLFEGL 660
+CH G+G TF++ + L+YL L F TD K + SL E L
Sbjct: 35 LCH--IGHGRTFVSFDVVSRYLRYLGYDLTFVRNITDIDDKIIKRAAENGETCDSLTERL 92
Query: 661 AGTLHFLVDCLDARNARFPIYEL*YYQELI 750
G +H D L+ + Y QE+I
Sbjct: 93 IGEMHADFDALNMKRPDVEPRATQYIQEII 122
>sp|P37609|LCN2_LACLA Lacticin 481/lactococcin biosynthesis protein lcnDR2
Length = 922
Score = 31.2 bits (69), Expect = 3.6
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +1
Query: 310 WCHGAPGWIHMFIAAHKVIA*IRIYSTKF*S*VFKNSVFIDMAKEISE---VIWKRGLLF 480
WCHGA G + IA + + + NS I + KE+ E ++ K G+
Sbjct: 780 WCHGASG---------QAIARMEWITVNKTARFLSNSELIKVKKELGELIDILKKEGMYT 830
Query: 481 KGCGICHGSAGN 516
+CHG GN
Sbjct: 831 DNFCLCHGILGN 842
>sp|Q03202|NISC_LACLA Nisin biosynthesis protein nisC
Length = 418
Score = 30.4 bits (67), Expect = 6.1
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = +1
Query: 310 WCHGAPGWIHMFIAAHKVIA*IRIYSTKF*S*VFKNSVFIDMAKEISEVIWKRGLLFKGC 489
WC+G PG +++ + N F+D A++I E +R L
Sbjct: 283 WCYGGPGISLLYLYGGLAL---------------DNDYFVDKAEKILESAMQRKLGIDSY 327
Query: 490 GICHGSAG 513
ICHG +G
Sbjct: 328 MICHGYSG 335
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,111,876
Number of Sequences: 369166
Number of extensions: 1915470
Number of successful extensions: 4367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4344
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)