Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_I17
(141 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36029|YKR4_YEAST Hypothetical amino-acid permease in ST... 30 1.7
sp|Q8BHJ5|TBL1R_MOUSE F-box-like/WD-repeat protein TBL1XR1 ... 30 2.2
sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD-repeat protein TBL1XR1 ... 30 2.2
sp|Q9QXE7|TBLX_MOUSE F-box-like/WD-repeat protein TBL1X (Tr... 29 2.9
sp|Q95RJ9|EBI_DROME F-box-like/WD-repeat protein ebi 28 5.0
sp|O60907|TBL1X_HUMAN F-box-like/WD-repeat protein TBL1X (T... 28 5.0
>sp|P36029|YKR4_YEAST Hypothetical amino-acid permease in STE3-GIN10 intergenic region
Length = 618
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 117 KNSLVISLSITE*IGLLCFVSVCKFNPFL 31
KNS+V+S+ I+ +GLL +S FN F+
Sbjct: 400 KNSVVLSMIISYFLGLLALISTAAFNAFI 428
>sp|Q8BHJ5|TBL1R_MOUSE F-box-like/WD-repeat protein TBL1XR1 (Transducin beta-like
1X-linked receptor 1) (Nuclear receptor
corepressor/HDAC3 complex subunit TBLR1) (TBL1-related
protein 1)
Length = 514
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 35 KGLNLHTLTKQSKPIYSVMLS 97
+G+ +HTLTK +P+YSV S
Sbjct: 431 RGICIHTLTKHQEPVYSVAFS 451
>sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD-repeat protein TBL1XR1 (Transducin beta-like
1X-linked receptor 1) (Nuclear receptor
corepressor/HDAC3 complex subunit TBLR1) (TBL1-related
protein 1)
Length = 514
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 35 KGLNLHTLTKQSKPIYSVMLS 97
+G+ +HTLTK +P+YSV S
Sbjct: 431 RGICIHTLTKHQEPVYSVAFS 451
>sp|Q9QXE7|TBLX_MOUSE F-box-like/WD-repeat protein TBL1X (Transducin beta-like 1X
protein)
Length = 527
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 35 KGLNLHTLTKQSKPIYSVMLS 97
+G+ +HTLTK +P+YSV S
Sbjct: 444 RGVCIHTLTKHQEPVYSVAFS 464
>sp|Q95RJ9|EBI_DROME F-box-like/WD-repeat protein ebi
Length = 700
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 35 KGLNLHTLTKQSKPIYSVMLS 97
+G +HTLTK ++P+YSV S
Sbjct: 616 RGSCIHTLTKHTEPVYSVAFS 636
>sp|O60907|TBL1X_HUMAN F-box-like/WD-repeat protein TBL1X (Transducin beta-like 1X
protein) (Transducin-beta-like 1, X-linked) (SMAP55)
Length = 526
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 20 WAI*RKGLNLHTLTKQSKPIYSVMLS 97
W I +G+ HTLTK +P+YSV S
Sbjct: 439 WDI-ERGVCTHTLTKHQEPVYSVAFS 463
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,908,708
Number of Sequences: 369166
Number of extensions: 194324
Number of successful extensions: 429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 68,354,980
effective HSP length: 20
effective length of database: 64,660,280
effective search space used: 1681167280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)