Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_I15
(287 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57816|MRAY_PASMU Phospho-N-acetylmuramoyl-pentapeptide-... 34 0.091
sp|P45062|MRAY_HAEIN Phospho-N-acetylmuramoyl-pentapeptide-... 32 0.34
sp|Q65RY3|MRAY_MANSM Phospho-N-acetylmuramoyl-pentapeptide-... 32 0.34
sp|Q8Z9H1|MRAY_SALTI Phospho-N-acetylmuramoyl-pentapeptide-... 32 0.45
sp|P0A6W3|MRAY_ECOLI Phospho-N-acetylmuramoyl-pentapeptide-... 32 0.45
sp|Q66EK8|MRAY_YERPS Phospho-N-acetylmuramoyl-pentapeptide-... 32 0.45
sp|Q8ZRU5|MRAY_SALTY Phospho-N-acetylmuramoyl-pentapeptide-... 32 0.45
sp|P64257|MRAY_ECOL6 Phospho-N-acetylmuramoyl-pentapeptide-... 32 0.45
sp|Q7VQJ0|MRAY_BLOFL Phospho-N-acetylmuramoyl-pentapeptide-... 32 0.59
sp|Q8D2Z3|MRAY_WIGBR Phospho-N-acetylmuramoyl-pentapeptide-... 31 0.77
>sp|P57816|MRAY_PASMU Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 360
Score = 34.3 bits (77), Expect = 0.091
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 17 FIASLVMYCLAIIGSSMGFLIFALRSVNQVYIYSVFMGVLG 139
F A LV++C AI+G+ +GFL F Y VFMG +G
Sbjct: 235 FSAELVVFCTAIVGAGLGFLWF------NTYPAQVFMGDVG 269
>sp|P45062|MRAY_HAEIN Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 360
Score = 32.3 bits (72), Expect = 0.34
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 17 FIASLVMYCLAIIGSSMGFLIFALRSVNQVYIYSVFMGVLG 139
+ + +V++C AI+G+S+GFL F Y VFMG +G
Sbjct: 235 YSSEVVVFCTAIVGASLGFLWF------NTYPAQVFMGDVG 269
>sp|Q65RY3|MRAY_MANSM Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 360
Score = 32.3 bits (72), Expect = 0.34
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 17 FIASLVMYCLAIIGSSMGFLIFALRSVNQVYIYSVFMGVLG 139
+ + LV++C AI+G+ +GFL F Y VFMG +G
Sbjct: 235 YTSELVIFCTAIVGAGLGFLWF------NTYPAQVFMGDVG 269
>sp|Q8Z9H1|MRAY_SALTI Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 360
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 2 IRHEGFIASLVMYCLAIIGSSMGFLIFALRSVNQVYIYSVFMGVLG 139
+RH G LV+ C AI+G+ +GFL F Y VFMG +G
Sbjct: 233 LRHAG---ELVIVCTAIVGAGLGFLWF------NTYPAQVFMGDVG 269
>sp|P0A6W3|MRAY_ECOLI Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
sp|P0A6W4|MRAY_SHIFL Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 360
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 2 IRHEGFIASLVMYCLAIIGSSMGFLIFALRSVNQVYIYSVFMGVLG 139
+RH G LV+ C AI+G+ +GFL F Y VFMG +G
Sbjct: 233 LRHAG---ELVIVCTAIVGAGLGFLWF------NTYPAQVFMGDVG 269
>sp|Q66EK8|MRAY_YERPS Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
sp|Q8ZIF2|MRAY_YERPE Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 360
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 2 IRHEGFIASLVMYCLAIIGSSMGFLIFALRSVNQVYIYSVFMGVLG 139
+RH G LV+ C AI+G+ +GFL F Y VFMG +G
Sbjct: 233 LRHAG---ELVIVCTAIVGAGLGFLWF------NTYPAQVFMGDVG 269
>sp|Q8ZRU5|MRAY_SALTY Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 360
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 2 IRHEGFIASLVMYCLAIIGSSMGFLIFALRSVNQVYIYSVFMGVLG 139
+RH G LV+ C AI+G+ +GFL F Y VFMG +G
Sbjct: 233 LRHAG---ELVIVCTAIVGAGLGFLWF------NTYPAQVFMGDVG 269
>sp|P64257|MRAY_ECOL6 Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
sp|P64258|MRAY_ECO57 Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 360
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 2 IRHEGFIASLVMYCLAIIGSSMGFLIFALRSVNQVYIYSVFMGVLG 139
+RH G LV+ C AI+G+ +GFL F Y VFMG +G
Sbjct: 233 LRHAG---ELVIVCTAIVGAGLGFLWF------NTYPAQVFMGDVG 269
>sp|Q7VQJ0|MRAY_BLOFL Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 365
Score = 31.6 bits (70), Expect = 0.59
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 2 IRHEGFIASLVMYCLAIIGSSMGFLIFALRSVNQVYIYSVFMGVLG 139
I H I LV+ C +IIG+ +GFL F Y +FMG +G
Sbjct: 233 IEHVDCIKELVVVCASIIGAGLGFLWF------NSYPSQIFMGDVG 272
>sp|Q8D2Z3|MRAY_WIGBR Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 360
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 17 FIASLVMYCLAIIGSSMGFLIFALRSVNQVYIYSVFMGVLG 139
F LV+ C +IIGS +GFL F Y +FMG +G
Sbjct: 235 FSGELVIICTSIIGSGLGFLWF------NTYPAKIFMGDVG 269
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,615,409
Number of Sequences: 369166
Number of extensions: 353549
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)