Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_H23
(731 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 78 2e-14
sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, si... 66 8e-11
sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, si... 66 8e-11
sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, sign... 66 8e-11
sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, si... 66 8e-11
sp|O01367|HOW_DROME Held out wings protein (KH-domain prote... 44 4e-04
sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppres... 40 0.005
sp|Q8NHZ7|MB3L2_HUMAN Methyl-CpG binding domain protein 3-l... 33 1.0
sp|Q10900|CTPI_MYCTU Probable cation-transporting ATPase I 33 1.0
sp|P25805|CYSP_PLAFA Trophozoite cysteine proteinase precur... 30 6.6
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33
Length = 308
Score = 78.2 bits (191), Expect = 2e-14
Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 7/88 (7%)
Frame = +2
Query: 2 GAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIP- 178
G GS+R+ KE+EL NSGD KY HL ++LH++I SI +P+EA+ ++YAL E+KK + P
Sbjct: 117 GRGSMRDRNKEEELRNSGDVKYAHLNEQLHIEIISIASPAEAHARMAYALTEIKKYITPE 176
Query: 179 -DPN-----EQAPGQMPMVTPLMGGPNP 244
DPN G M + +MGGP P
Sbjct: 177 EDPNYMMMAGHGAGPMMGMGGMMGGPGP 204
>sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 66.2 bits (160), Expect = 8e-11
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPD 181
G GS+R+ KE+EL GDPKY HL LH+ I+ G P EAY +++A+ EVKK ++PD
Sbjct: 199 GKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPD 258
Query: 182 -PNEQAPGQMPMVTPLMGGPNPGFG 253
++ Q ++ L G P P G
Sbjct: 259 MMDDICQEQFLELSYLNGVPEPSRG 283
>sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 66.2 bits (160), Expect = 8e-11
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPD 181
G GS+R+ KE+EL GDPKY HL LH+ I+ G P EAY +++A+ EVKK ++PD
Sbjct: 199 GKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPD 258
Query: 182 -PNEQAPGQMPMVTPLMGGPNPGFG 253
++ Q ++ L G P P G
Sbjct: 259 MMDDICQEQFLELSYLNGVPEPSRG 283
>sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 66.2 bits (160), Expect = 8e-11
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPD 181
G GS+R+ KE+EL GDPKY HL LH+ I+ G P EAY +++A+ EVKK ++PD
Sbjct: 199 GKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPD 258
Query: 182 -PNEQAPGQMPMVTPLMGGPNPGFG 253
++ Q ++ L G P P G
Sbjct: 259 MMDDICQEQFLELSYLNGVPEPSRG 283
>sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, signal transduction associated
protein 1 (Src-associated in mitosis 68 kDa protein)
(Sam68)
Length = 433
Score = 66.2 bits (160), Expect = 8e-11
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Frame = +2
Query: 2 GAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPD 181
G GS+R+ KE+EL GDPKY HL LH+ I+ G P EAY +++A+ EVKK ++PD
Sbjct: 182 GKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPD 241
Query: 182 PNEQAPGQ----------MPMVTPLMGGPNPGFGAMRTQP 271
+ + +P T GGP G GA P
Sbjct: 242 MMDDICQEQFLELSYLNGVPEPTRGRGGPVRGRGAAPPPP 281
>sp|O01367|HOW_DROME Held out wings protein (KH-domain protein KH93F) (Putative
RNA-binding protein) (Muscle-specific protein) (Wings
held out protein) (Struthio protein) (Quaking-related
93F)
Length = 405
Score = 43.9 bits (102), Expect = 4e-04
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +2
Query: 2 GAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPD 181
G GS+R+ +KE N G P + HL D LH+ I + A ++ A+AEV+K+++P
Sbjct: 180 GKGSMRDKKKEDA--NRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVP- 236
Query: 182 PNEQAPGQ 205
QA G+
Sbjct: 237 ---QAEGE 241
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ
line development protein 1)
Length = 463
Score = 40.4 bits (93), Expect = 0.005
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 2 GAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPD 181
G GS+R +K +E + G + HL D LH+ + + + + AL +VKK++IP
Sbjct: 248 GKGSMR--DKSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPA 305
Query: 182 P 184
P
Sbjct: 306 P 306
>sp|Q8NHZ7|MB3L2_HUMAN Methyl-CpG binding domain protein 3-like 2 (MBD3-like 2)
Length = 204
Score = 32.7 bits (73), Expect = 1.0
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 86 LHLQ-IDSIGNPSEAYYNISYALAEVKKVMIPDPNEQAPGQMPMVTPLMGGPNPGFGAMR 262
LHL+ + SI P A ++ A AE + P E PG+ P V GGP PG G
Sbjct: 109 LHLESVLSILAPGTASESLDRAGAE----RVRSPLEPTPGRFPAVA---GGPTPGMGCQL 161
Query: 263 TQPMTQQ 283
P++ Q
Sbjct: 162 PPPLSGQ 168
>sp|Q10900|CTPI_MYCTU Probable cation-transporting ATPase I
Length = 1625
Score = 32.7 bits (73), Expect = 1.0
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Frame = +2
Query: 8 GSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPDPN 187
G+LR ++ + ++ G R LH Q D G + Y ++ AL ++ PDP+
Sbjct: 412 GALRRLDRVRVVVIDGAALRGDNRAVLHAQGDEPGWDDDRVYEVADALLHGEQAPEPDPD 471
Query: 188 E---------QAPGQMPMVTPLMG 232
E AP Q P TP G
Sbjct: 472 ELPATGARLRWAPAQGPSATPAQG 495
>sp|P25805|CYSP_PLAFA Trophozoite cysteine proteinase precursor (TCP)
Length = 569
Score = 30.0 bits (66), Expect = 6.6
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 26 EKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPDPNEQ 193
E+++E YN+ + +++ DSI + E Y N+ L E K I + NE+
Sbjct: 103 EEDEEKYTLNSETYNNKNNVSNIKNDSIKSKKEEYINLERILLEKYKKFINENNEE 158
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,469,059
Number of Sequences: 369166
Number of extensions: 1441451
Number of successful extensions: 3230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3225
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)