Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_H22
(351 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91907|GPA15_CAEEL Guanine nucleotide-binding protein al... 29 2.9
sp|Q9RH41|RPOB_RICCN DNA-directed RNA polymerase beta chain... 29 3.8
sp|Q9RH43|RPOB_RICMA DNA-directed RNA polymerase beta chain... 29 3.8
sp|Q61DE0|GPA15_CAEBR Guanine nucleotide-binding protein al... 28 5.0
sp|Q81GK4|CLS2_BACCR Cardiolipin synthetase 2 (Cardiolipin ... 28 6.5
sp|Q81TR2|CLS2_BACAN Cardiolipin synthetase 2 (Cardiolipin ... 28 8.5
>sp|P91907|GPA15_CAEEL Guanine nucleotide-binding protein alpha-15 subunit
Length = 356
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = -1
Query: 243 TLSLFNPITNFLNVSGPINRWIVLVCFDTFNTFIKYFADNFKTSIASFLFSTFTSTNLYP 64
++ LF I N +RW V F F KT+ + LFST+ +N Y
Sbjct: 248 SIKLFETICN--------SRWFVQAAMILFLNKRDLFEQKLKTTSINVLFSTYQGSNDYA 299
Query: 63 S*ETFVQASVKSVAKITNL 7
++Q + + K +++
Sbjct: 300 ECVAYIQMRFERLNKYSDI 318
>sp|Q9RH41|RPOB_RICCN DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1373
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 164 KQTKTIHLFMGPETFKKFVIGLKRLNVNHRVIIRNEAEVFFC*KSIMKGFH 316
K+ K H+ G E KKF+I L N+N ++ R E E+ K + KG H
Sbjct: 1163 KEYKNKHI--GIEQIKKFLIELYGENIN-SILERPEEEIISFCKKVSKGVH 1210
>sp|Q9RH43|RPOB_RICMA DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1373
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 164 KQTKTIHLFMGPETFKKFVIGLKRLNVNHRVIIRNEAEVFFC*KSIMKGFH 316
K+ K H+ G E KKF+I L N+N ++ R E E+ K + KG H
Sbjct: 1163 KEYKNKHI--GIEQIKKFLIELYGENIN-SILERPEEEIISFCKKVSKGVH 1210
>sp|Q61DE0|GPA15_CAEBR Guanine nucleotide-binding protein alpha-15 subunit
Length = 356
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/79 (24%), Positives = 32/79 (40%)
Frame = -1
Query: 243 TLSLFNPITNFLNVSGPINRWIVLVCFDTFNTFIKYFADNFKTSIASFLFSTFTSTNLYP 64
++ LF I N +RW V F F KT+ + LFST+ +N Y
Sbjct: 248 SIKLFETICN--------SRWFVQAAMILFLNKRDLFEQKLKTTSINVLFSTYLGSNDYA 299
Query: 63 S*ETFVQASVKSVAKITNL 7
++Q + + K ++
Sbjct: 300 ECVAYIQLRFERLNKYADV 318
>sp|Q81GK4|CLS2_BACCR Cardiolipin synthetase 2 (Cardiolipin synthase 2) (CL synthase 2)
Length = 514
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 143 INVLKVSKQTKTIHLFMGPETFKKFVIGLKR 235
+ L +S QT+T L G ETF+ + GLKR
Sbjct: 142 LGALNISFQTETRTLTNGDETFRAILNGLKR 172
>sp|Q81TR2|CLS2_BACAN Cardiolipin synthetase 2 (Cardiolipin synthase 2) (CL synthase 2)
Length = 514
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 143 INVLKVSKQTKTIHLFMGPETFKKFVIGLKR 235
+ L +S QT+T L G ETF+ + GLKR
Sbjct: 142 LGALNISFQTETRTLTNGDETFQAILDGLKR 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,646,690
Number of Sequences: 369166
Number of extensions: 402136
Number of successful extensions: 1008
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)