Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_H02
(275 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62770|UN13C_RAT Unc-13 homolog C (Munc13-3) 32 0.60
sp|Q8K0T7|UN13C_MOUSE Unc-13 homolog C (Munc13-3) 32 0.60
sp|Q8NB66|UN13C_HUMAN Unc-13 homolog C (Munc13-3) 32 0.60
sp|P19498|FRHG_METTH Coenzyme F420 hydrogenase gamma subuni... 30 1.3
sp|P38201|YBC9_YEAST Hypothetical 42.6 kDa protein in AAC2-... 30 1.7
sp|Q00393|FRHG_METVO Coenzyme F420 hydrogenase gamma subuni... 28 6.6
sp|Q6FRH2|ATG11_CANGA Autophagy-related protein 11 28 6.6
sp|P54356|TSG_DROME Twisted gastrulation protein precursor 28 8.6
sp|Q5XHY8|CF146_RAT Protein C6orf146 homolg 28 8.6
>sp|Q62770|UN13C_RAT Unc-13 homolog C (Munc13-3)
Length = 2204
Score = 31.6 bits (70), Expect = 0.60
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 56 KSIKCLANSVKCAKDCPK-LNSDCLVKCGEVYKQCKQAKDDK 178
+ +KCL VKC + C LN+DCL + E K K +DK
Sbjct: 1114 QGMKCLECGVKCHEKCQDLLNADCLQRAAE--KSSKHGAEDK 1153
>sp|Q8K0T7|UN13C_MOUSE Unc-13 homolog C (Munc13-3)
Length = 1430
Score = 31.6 bits (70), Expect = 0.60
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 56 KSIKCLANSVKCAKDCPK-LNSDCLVKCGEVYKQCKQAKDDK 178
+ +KCL VKC + C LN+DCL + E K K +DK
Sbjct: 1120 QGMKCLECGVKCHEKCQDLLNADCLQRAAE--KSSKHGAEDK 1159
>sp|Q8NB66|UN13C_HUMAN Unc-13 homolog C (Munc13-3)
Length = 1190
Score = 31.6 bits (70), Expect = 0.60
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 56 KSIKCLANSVKCAKDCPK-LNSDCLVKCGEVYKQCKQAKDDK 178
+ +KCL VKC + C LN+DCL + E K K +DK
Sbjct: 100 QGMKCLECGVKCHEKCQDLLNADCLQRAAE--KSSKHGAEDK 139
>sp|P19498|FRHG_METTH Coenzyme F420 hydrogenase gamma subunit
(8-hydroxy-5-deazaflavin-reducing hydrogenase gamma
subunit) (FRH)
Length = 236
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 59 SIKCLANSVKCAKDCPKLNSDCLVKCGEVYKQCKQA 166
++ C ++ P+LNSD +KCG Y QC ++
Sbjct: 188 AMACQTRALDMTNGRPELNSDRCIKCGICYVQCPRS 223
>sp|P38201|YBC9_YEAST Hypothetical 42.6 kDa protein in AAC2-RPL19B intergenic region
Length = 376
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -3
Query: 198 DQKLNYNLSSFACLHCL*TSPHL-TRQSEFN---FGQSLAHFTEFAKHLMLLKFNEYPS* 31
++ +NYNL SFA L+C SP L ++ N +G ++ F LL +N+ +
Sbjct: 14 NENINYNLESFAPLNCDVNSPFLPINNNDINVNAYGDENLTYSNF-----LLSYNDKLAT 68
Query: 30 ITATNTTKN 4
TA N + N
Sbjct: 69 TTAKNNSIN 77
>sp|Q00393|FRHG_METVO Coenzyme F420 hydrogenase gamma subunit
(8-hydroxy-5-deazaflavin-reducing hydrogenase gamma
subunit) (FRH)
Length = 243
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 68 CLANSVKCAKDCPKLNSDCLVKCGEVYKQCKQAK 169
C N++ + P +NS+ +KCG QC + +
Sbjct: 201 CQVNAIDMVEAKPNINSEFCIKCGICSAQCPRVR 234
>sp|Q6FRH2|ATG11_CANGA Autophagy-related protein 11
Length = 1110
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 187 QFLIRTCSCSFYLYNDIEVHFY*INEFKL 273
Q+L+ C+ LY D+EV F I ++ L
Sbjct: 403 QYLLNDCNADLTLYKDLEVEFAQIEDYPL 431
>sp|P54356|TSG_DROME Twisted gastrulation protein precursor
Length = 249
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 56 KSIKCLANSVKCAKDCPKLNSDCLVKCGEVYKQCKQAKD 172
+S +C N C KDC + ++C C + KD
Sbjct: 42 QSCQCKLNDCHCCKDCLNCLGELYIECCGCLDMCPKHKD 80
>sp|Q5XHY8|CF146_RAT Protein C6orf146 homolg
Length = 419
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 107 KLNSDCLVKCGEVYKQCKQAKDD 175
K NS L+KC KQC A DD
Sbjct: 292 KSNSRSLLKCSSTSKQCAMAHDD 314
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,706,312
Number of Sequences: 369166
Number of extensions: 391363
Number of successful extensions: 938
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 68,354,980
effective HSP length: 61
effective length of database: 57,086,145
effective search space used: 1712584350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)