Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_G10
(297 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 152 2e-37
sp|P41116|RL8_XENLA 60S ribosomal protein L8 152 2e-37
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 152 2e-37
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 152 2e-37
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 150 7e-37
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 150 7e-37
sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 150 7e-37
sp|P08093|RL2_SCHPO 60S ribosomal protein L2 (K5) (K37) (KD4) 149 3e-36
sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8 149 3e-36
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 147 6e-36
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 152 bits (384), Expect = 2e-37
Identities = 68/86 (79%), Positives = 76/86 (88%)
Frame = +2
Query: 2 IVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSR 181
+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Query: 182 HTVPGRKVGLVAARRTGLLRGTKVIK 259
GRKVGL+AARRTG LRGTK ++
Sbjct: 228 DAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 152 bits (384), Expect = 2e-37
Identities = 68/86 (79%), Positives = 76/86 (88%)
Frame = +2
Query: 2 IVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSR 181
+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Query: 182 HTVPGRKVGLVAARRTGLLRGTKVIK 259
GRKVGL+AARRTG LRGTK ++
Sbjct: 228 DAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 152 bits (384), Expect = 2e-37
Identities = 68/86 (79%), Positives = 76/86 (88%)
Frame = +2
Query: 2 IVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSR 181
+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Query: 182 HTVPGRKVGLVAARRTGLLRGTKVIK 259
GRKVGL+AARRTG LRGTK ++
Sbjct: 228 DAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 152 bits (384), Expect = 2e-37
Identities = 68/86 (79%), Positives = 76/86 (88%)
Frame = +2
Query: 2 IVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSR 181
+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Query: 182 HTVPGRKVGLVAARRTGLLRGTKVIK 259
GRKVGL+AARRTG LRGTK ++
Sbjct: 228 DAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 150 bits (380), Expect = 7e-37
Identities = 67/86 (77%), Positives = 75/86 (87%)
Frame = +2
Query: 2 IVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSR 181
+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Query: 182 HTVPGRKVGLVAARRTGLLRGTKVIK 259
GRKVGL+A RRTG LRGTK ++
Sbjct: 228 DAPAGRKVGLIAVRRTGRLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 150 bits (380), Expect = 7e-37
Identities = 67/86 (77%), Positives = 75/86 (87%)
Frame = +2
Query: 2 IVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSR 181
+VAGGGRI+KP+LKAGRAYHKYK KRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYKVKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Query: 182 HTVPGRKVGLVAARRTGLLRGTKVIK 259
GRKVGL+AARRTG LRGTK ++
Sbjct: 228 DVPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8
Length = 261
Score = 150 bits (380), Expect = 7e-37
Identities = 68/83 (81%), Positives = 74/83 (89%)
Frame = +2
Query: 2 IVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSR 181
IVAGGGRI+KP+LKAGRAYHKYK KRNCWP+VRGV MNPV+HPHGGGNHQHIG STV R
Sbjct: 168 IVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKR 227
Query: 182 HTVPGRKVGLVAARRTGLLRGTK 250
T PGRKVGL+AARRTG +RG K
Sbjct: 228 GTPPGRKVGLIAARRTGRIRGGK 250
>sp|P08093|RL2_SCHPO 60S ribosomal protein L2 (K5) (K37) (KD4)
Length = 253
Score = 149 bits (375), Expect = 3e-36
Identities = 64/86 (74%), Positives = 75/86 (87%)
Frame = +2
Query: 2 IVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSR 181
IVAGGGRI+KP+LKAGRA+HKY+ KRNCWPR RGV MNPVDHPHGGGNHQH+G +TV R
Sbjct: 167 IVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPR 226
Query: 182 HTVPGRKVGLVAARRTGLLRGTKVIK 259
+ PG+KVGL+AARRTGLLRG ++
Sbjct: 227 QSAPGQKVGLIAARRTGLLRGAAAVE 252
>sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8
Length = 260
Score = 149 bits (375), Expect = 3e-36
Identities = 67/90 (74%), Positives = 77/90 (85%)
Frame = +2
Query: 2 IVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSR 181
+VAGGGR +KP+LKAGR+YHKYKAKRN WPRVRGV MNPV+HPHGGGNHQHIG PSTV R
Sbjct: 168 LVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRR 227
Query: 182 HTVPGRKVGLVAARRTGLLRGTKVIKTTKQ 271
G+KVGL+AARRTG +RG K +K TK+
Sbjct: 228 DASAGKKVGLIAARRTGRIRGGKPVKFTKE 257
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 147 bits (372), Expect = 6e-36
Identities = 67/83 (80%), Positives = 73/83 (87%)
Frame = +2
Query: 2 IVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSR 181
IVAGGGRI+KP+LKAGRAY KYK KRNCWP+VRGV MNPV+HPHGGGNHQHIG STV R
Sbjct: 168 IVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKR 227
Query: 182 HTVPGRKVGLVAARRTGLLRGTK 250
T PGRKVGL+AARRTG +RG K
Sbjct: 228 GTPPGRKVGLIAARRTGRIRGGK 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,012,156
Number of Sequences: 369166
Number of extensions: 725571
Number of successful extensions: 2241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2234
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)