Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_G09
(920 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein 55 4e-07
sp|P29126|XYNA_RUMFL Bifunctional endo-1,4-beta-xylanase xy... 53 1e-06
sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP) 52 2e-06
sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-resp... 51 4e-06
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 49 2e-05
sp|P47459|P65H_MYCGE Proline-rich P65 protein homolog 48 3e-05
sp|P23637|ERF2_PICPI Eukaryotic peptide chain release facto... 48 3e-05
sp|Q92804|RBP56_HUMAN TATA-binding protein associated facto... 47 8e-05
sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III larges... 47 1e-04
sp|P04282|GAG17_DROME Retrovirus-related Gag polyprotein fr... 46 1e-04
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
Length = 448
Score = 54.7 bits (130), Expect = 4e-07
Identities = 58/284 (20%), Positives = 114/284 (40%), Gaps = 31/284 (10%)
Frame = +2
Query: 62 PPPISSTYETSADPNMMQQSTGDQSMNDYYDQSNKQKYPKPYEYNSSGM------KPNQS 223
P PI++ + + + + + + + N+ + SN P + +++ +P ++
Sbjct: 111 PQPINNNNNNNNNNSNINNNNNNSNNNNNNNNSNLGINSSPTQSSANSADKRSRGRPRKN 170
Query: 224 INSAPKEAS--YLEQFPPPSF---GSPIKPNIRGRGISNMRGRQQLSK---------TNF 361
S PK+ S ++ PP G+P + G + RGR + K T+F
Sbjct: 171 PPSEPKDTSGPKRKRGRPPKMDEEGNPQPKPVPQPGSNKKRGRPKKPKDENESDYNNTSF 230
Query: 362 NQARN---------PPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFNYNNQSMVNKRDSRG 514
+ + PP +G + S GN + +N N NN S +N ++
Sbjct: 231 SDSNTDGTPKKRGRPPKAKGESPSASPT-HNTLGNGILNSNNNNNNNNNNSNINNINNNN 289
Query: 515 GFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYENSDFFDQNYNESNENHE 694
N+N N + N ++S ++ N + + N+ N++ + N N +N N++
Sbjct: 290 NNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQ 349
Query: 695 YDDSGY--GEWHANKNRLDFNSQNYNQHTTDDISKRDFETTKYP 820
++ + N N + N QN N + T + S TT P
Sbjct: 350 NTNNNNMGNNSNNNNNPNNNNHQNNNNNNTSNNSNTTTATTTAP 393
Score = 36.6 bits (83), Expect = 0.10
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
Frame = +2
Query: 299 NIRGRGISNMRGRQQLSKTNFNQAR----NPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQ 466
NI +N S N N N N N +NN+ N++ + +N
Sbjct: 284 NINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNN 343
Query: 467 FNYNNQSMVNKRDSRGGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYEN 646
N NNQ N ++ G N+N N ++ N +++ + T+ N+ N
Sbjct: 344 NNANNQ---NTNNNNMGNNSNNNNNPNNNNHQNNNNNNTSNNSNTTTATTTAPGGNNLTN 400
Query: 647 S 649
S
Sbjct: 401 S 401
Score = 34.7 bits (78), Expect = 0.39
Identities = 62/295 (21%), Positives = 100/295 (33%), Gaps = 11/295 (3%)
Frame = +2
Query: 56 NHPPPISSTYETSADPNMMQQSTGDQSMNDYYDQSNKQKYPKPYEYNSSGMKPNQS---- 223
N P + T + QS+ Q +N+ + +N NS+ N +
Sbjct: 87 NGQPQMHGTNLNGLSLAIQNQSSLPQPINNNNNNNNNNSNINNNNNNSNNNNNNNNSNLG 146
Query: 224 INSAPKEASY----LEQFPPPSFGSPIKPNIRGRGISNMRGRQQLSKTNFNQARNPPYNR 391
INS+P ++S P P +P G RGR N P
Sbjct: 147 INSSPTQSSANSADKRSRGRPRKNPPSEPKDTS-GPKRKRGRPPKMDEEGNPQPKPVPQP 205
Query: 392 GAFTNKSNNDRRQFGNDDYSEDNQQFNYNNQSMVNKRDSRGGFNANRGRNMDSRNFTQHD 571
G SN R G +D + +YNN S + G RGR ++ +
Sbjct: 206 G-----SNKKR---GRPKKPKDENESDYNNTSFSDSNTD--GTPKKRGRPPKAKGESPSA 255
Query: 572 SWYQEEEISDLQQNQTSYSQNDYENSDFFDQNYNESNENHEYDDSGYGEWHANKNRLDFN 751
S + + N + + N+ NS+ + N N +N ++ N N N
Sbjct: 256 S-PTHNTLGNGILNSNNNNNNNNNNSNINNINNNNNNNSN------------NNNNSSNN 302
Query: 752 SQNYNQHTTDDISKRDFET---TKYPRMEAPNQKYAFDNPDQRMNSQNVQPRNGG 907
+ N N T ++ + + T T N +N + N+QN N G
Sbjct: 303 NNNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMG 357
Score = 32.0 bits (71), Expect = 2.5
Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 4/167 (2%)
Frame = +2
Query: 308 GRGISNMRGRQQLSKTNFNQARNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFNYNNQS 487
G N G+ Q+ TN N N+ + NN+ N++ + ++ N NN S
Sbjct: 80 GNNSGNNNGQPQMHGTNLNGLSLAIQNQSSLPQPINNN-----NNNNNNNSNINNNNNNS 134
Query: 488 MVNKRDSRGGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYENSDFFDQN 667
N ++ N S N S + + + TS + D+
Sbjct: 135 NNNNNNNNSNLGINSSPTQSSANSADKRSRGRPRKNPPSEPKDTSGPKRKRGRPPKMDEE 194
Query: 668 YNESNENHEYDDS----GYGEWHANKNRLDFNSQNYNQHTTDDISKR 796
N + S G + ++N D+N+ +++ TD K+
Sbjct: 195 GNPQPKPVPQPGSNKKRGRPKKPKDENESDYNNTSFSDSNTDGTPKK 241
>sp|P29126|XYNA_RUMFL Bifunctional endo-1,4-beta-xylanase xylA precursor
Length = 954
Score = 53.1 bits (126), Expect = 1e-06
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 3/188 (1%)
Frame = +2
Query: 347 SKTNFNQARNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFNYNNQSMVNKRDSRGGFNA 526
+ N+NQ N N + N++N + Q N+D+++ N Q N+NN N ++ +N
Sbjct: 392 NNNNWNQ-NNQQQNNWDWNNQNNWNNNQQQNNDWNQWNNQNNWNNNQQQNNDWNQ--WNN 448
Query: 527 NRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYENSDFFDQN--YNESNENHEYD 700
+N D + ++W Q QQN + N+ N + +DQN +N +N+ +D
Sbjct: 449 QGQQNNDWNQWNNQNNWNQNNN----QQNAWNGWDNN-NNWNQWDQNNQWNNQQQNNTWD 503
Query: 701 DSGYGEWHANKNRLDFNS-QNYNQHTTDDISKRDFETTKYPRMEAPNQKYAFDNPDQRMN 877
+ W+ N+ D+N N Q +D ++ + + NQ +D +Q
Sbjct: 504 WNNQNNWNNNQQNNDWNQWNNQGQQQNNDWNQWNNQNN--------NQNNGWDWNNQNNW 555
Query: 878 SQNVQPRN 901
+QN +N
Sbjct: 556 NQNNNQQN 563
Score = 52.8 bits (125), Expect = 1e-06
Identities = 44/204 (21%), Positives = 97/204 (47%), Gaps = 10/204 (4%)
Frame = +2
Query: 323 NMRGRQQLSKTNFNQARNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFNYNNQSMVN-K 499
N +G+QQ + N +N +N+ + N++NN + + D +N +N NNQ N
Sbjct: 353 NNQGQQQNNDWNNWGQQNNDWNQ--WNNQNNNQQNAWNGWD---NNNNWNQNNQQQNNWD 407
Query: 500 RDSRGGFNANRGRNMDSRNFTQHDSWYQEEEISD-----LQQNQTSYSQNDYENSDFFDQ 664
+++ +N N+ +N D + ++W ++ ++ Q Q + N + N + ++Q
Sbjct: 408 WNNQNNWNNNQQQNNDWNQWNNQNNWNNNQQQNNDWNQWNNQGQQNNDWNQWNNQNNWNQ 467
Query: 665 NYNESNENHEYD-DSGYGEWHAN---KNRLDFNSQNYNQHTTDDISKRDFETTKYPRMEA 832
N N+ N + +D ++ + +W N N+ N+ ++N + ++++ + ++
Sbjct: 468 NNNQQNAWNGWDNNNNWNQWDQNNQWNNQQQNNTWDWNNQNNWNNNQQNNDWNQW----- 522
Query: 833 PNQKYAFDNPDQRMNSQNVQPRNG 904
NQ +N + N+QN NG
Sbjct: 523 NNQGQQQNNDWNQWNNQNNNQNNG 546
Score = 48.5 bits (114), Expect = 3e-05
Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 28/219 (12%)
Frame = +2
Query: 314 GISNMRGRQQ---LSKTNFNQARNPPYNRGAFTNKSNNDRRQFGN--------DDYSEDN 460
G S+ G+QQ ++ N NQ +N +N + NND Q+ N +++ + N
Sbjct: 242 GSSDNGGQQQNNDWNQQNNNQQQNNDWNNWG---QQNNDWNQWNNQGQQNNDWNNWGQQN 298
Query: 461 QQFN-YNNQSMVNKRD----SRGGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSY 625
+N +NNQ D + + N+ N + ++W Q+ + NQ
Sbjct: 299 NDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQGQQ 358
Query: 626 SQNDYENSDFFDQNYNESNENHEYDDSGYGEWHAN---------KNRLDFNSQ---NYNQ 769
ND+ N + ++N+ N + + + W N +N D+N+Q N NQ
Sbjct: 359 QNNDWNNWGQQNNDWNQWNNQNNNQQNAWNGWDNNNNWNQNNQQQNNWDWNNQNNWNNNQ 418
Query: 770 HTTDDISKRDFETTKYPRMEAPNQKYAFDNPDQRMNSQN 886
+D ++ + + + N ++N Q+ N N
Sbjct: 419 QQNNDWNQWNNQNNWNNNQQQNNDWNQWNNQGQQNNDWN 457
Score = 47.0 bits (110), Expect = 8e-05
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Frame = +2
Query: 356 NFNQARNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFNYNNQSMVNKRDSRGGFNANRG 535
N Q +N +N+ + N++NN G D +++N N N Q+ N D+ +N G
Sbjct: 524 NQGQQQNNDWNQ--WNNQNNNQNN--GWDWNNQNNWNQNNNQQNAWNGWDNNNNWNQWGG 579
Query: 536 RNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYENSDFFDQNYNESNENHEYDDSGYG 715
+N D N Q++ W Q NQ ND+ N + ++Q +N + DS G
Sbjct: 580 QNNDWNNQQQNNDWNQ-------WNNQGQQQNNDWNNQNNWNQGQQNNNNSAGSSDSLKG 632
Query: 716 EW------------HANKNRLDFNSQNYNQHTTDD 784
+ H + DF ++YN T ++
Sbjct: 633 AFSKYFKIGTSVSPHELNSGADFLKKHYNSITPEN 667
Score = 44.7 bits (104), Expect = 4e-04
Identities = 39/193 (20%), Positives = 79/193 (40%), Gaps = 3/193 (1%)
Frame = +2
Query: 323 NMRGRQQLSKTNFNQARNPPYNRGAFTNKSNNDRRQFG--NDDYSEDNQQFNYNNQSMVN 496
N +G+Q N+ Q N + NND +G N+D+++ N Q N N
Sbjct: 282 NNQGQQNNDWNNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQGQQQNNDWNN 341
Query: 497 KRDSRGGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYENSDFFDQNYNE 676
+N + N ++W Q+ + NQ + QN + D + N+N+
Sbjct: 342 WGQQNNDWNQWNNQGQQQNN--DWNNWGQQNNDWNQWNNQNNNQQNAWNGWD-NNNNWNQ 398
Query: 677 SN-ENHEYDDSGYGEWHANKNRLDFNSQNYNQHTTDDISKRDFETTKYPRMEAPNQKYAF 853
+N + + +D + W+ N+ + + +Q NQ+ ++ +++ + ++ N +
Sbjct: 399 NNQQQNNWDWNNQNNWNNNQQQNNDWNQWNNQNNWNNNQQQNNDWNQWNNQGQQNNDWNQ 458
Query: 854 DNPDQRMNSQNVQ 892
N N N Q
Sbjct: 459 WNNQNNWNQNNNQ 471
Score = 34.7 bits (78), Expect = 0.39
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Frame = +2
Query: 347 SKTNFNQARNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFN-----YNNQSMVNKRDSR 511
++ N+NQ N + N NN+ Q+G + +NQQ N +NNQ D
Sbjct: 551 NQNNWNQNNNQQNAWNGWDN--NNNWNQWGGQNNDWNNQQQNNDWNQWNNQGQQQNNDWN 608
Query: 512 GGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYEN-SDFFDQNYNESNEN 688
N N+G+ ++ + DS + S + TS S ++ + +DF ++YN
Sbjct: 609 NQNNWNQGQQNNNNSAGSSDS--LKGAFSKYFKIGTSVSPHELNSGADFLKKHYNSITPE 666
Query: 689 HE 694
+E
Sbjct: 667 NE 668
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
Length = 443
Score = 52.0 bits (123), Expect = 2e-06
Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 4/191 (2%)
Frame = +2
Query: 224 INSAPKEASYLEQFPPPSFGSPIKPNIRGRGISNMRGRQQLSKTNFNQARN---PPYNRG 394
I+++ +E + +F P+ I N + + ++ TNF+Q YN
Sbjct: 90 IDTSGEERNIDAKFAVPNVS--INNNNNNNNSNTFFQKNNMNNTNFSQGSTNYGSNYNSE 147
Query: 395 AFTNKSNNDRRQFGNDDYSEDNQQFNYNNQS-MVNKRDSRGGFNANRGRNMDSRNFTQHD 571
F +N + F N++ S +N N Q+ +N+ N N N + N +
Sbjct: 148 NFQGNNNMNNYNFYNNNSSNNNNNNQTNTQNNFMNRNMKNKNMNNNNNNNNSNNNMMMNM 207
Query: 572 SWYQEEEISDLQQNQTSYSQNDYENSDFFDQNYNESNENHEYDDSGYGEWHANKNRLDFN 751
++ ++++ N +QN++ ++ + N N N N Y D H N N + N
Sbjct: 208 NFNNNQQMN----NNPMLNQNNFMLNNNNNYNNNAKNVNDMYRDGEMSPNHLNNNNNNIN 263
Query: 752 SQNYNQHTTDD 784
+ N N + ++
Sbjct: 264 NNNNNNNNNNN 274
Score = 37.0 bits (84), Expect = 0.078
Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 6/239 (2%)
Frame = +2
Query: 74 SSTYETSADPNMMQQSTGDQSMNDYYDQSNKQKYPKPYEYN--SSGMKPNQSINSAPKEA 247
S+T+ + N S G + Y+ N Q YN ++ N + N +
Sbjct: 119 SNTFFQKNNMNNTNFSQGSTNYGSNYNSENFQGNNNMNNYNFYNNNSSNNNNNNQTNTQN 178
Query: 248 SYLEQFPPPSFGSPIKPNIRGRGISNMRGRQQLSKTNFNQAR----NPPYNRGAFTNKSN 415
+++ + + N+ +N + NFN + NP N+ F +N
Sbjct: 179 NFMNR-------NMKNKNMNNNNNNNNSNNNMMMNMNFNNNQQMNNNPMLNQNNFMLNNN 231
Query: 416 NDRRQFGNDDYSEDNQQFNYNNQSMVNKRDSRGGFNANRGRNMDSRNFTQHDSWYQEEEI 595
N+ N++ N + S + ++ N N N ++ N
Sbjct: 232 NNY----NNNAKNVNDMYRDGEMSPNHLNNNNNNINNNNNNNNNNNN------------- 274
Query: 596 SDLQQNQTSYSQNDYENSDFFDQNYNESNENHEYDDSGYGEWHANKNRLDFNSQNYNQH 772
N + QN+ + + N N + D E + +KN F N +H
Sbjct: 275 ----NNNVMFRQNNSHLAQMYQANDNSLEDVENVDGLSLWEMYKDKNNNIFYYNNLTKH 329
>sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-responsive protein 48) (DDRP 48)
(YP 75) (Flocculent-specific protein)
Length = 430
Score = 51.2 bits (121), Expect = 4e-06
Identities = 47/178 (26%), Positives = 68/178 (38%), Gaps = 12/178 (6%)
Frame = +2
Query: 389 RGAFTNKSNNDRRQFGNDDY-SEDNQQFNYNNQSMV--NKRDSRGGFNANRGRNMDSRNF 559
R F+N S ND ND Y S +N + NN N DS G N DS
Sbjct: 61 RQQFSNTSINDNDSNNNDSYGSNNNDSYGSNNNDSYGSNNNDSYG------SNNNDSYGS 114
Query: 560 TQHDSWYQEEEISDLQQNQTSYSQNDYENSDFFDQNYNE---SNENHEY---DDSGYGEW 721
DS+ + + S N+D + N N+ SN N Y +D YG
Sbjct: 115 NNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGS- 173
Query: 722 HANKNRLDFNSQN---YNQHTTDDISKRDFETTKYPRMEAPNQKYAFDNPDQRMNSQN 886
+NKN+ + S N Y + D + + + Y + N Y +N D ++ N
Sbjct: 174 -SNKNKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYG--SSNNDSYGSNNDDSYGSNNN 228
Score = 50.8 bits (120), Expect = 5e-06
Identities = 74/316 (23%), Positives = 108/316 (34%), Gaps = 40/316 (12%)
Frame = +2
Query: 74 SSTYETSADPNMMQQSTGDQSMNDYYDQSNKQKYPKPYEYNSSGMKPNQSINSAPKEASY 253
SS + S+ + S G + ND Y +N Y +S G + S S+ K S
Sbjct: 122 SSNKKKSSYGSNNDDSYGSSNNNDSYGSNNNDSYGSNNN-DSYGSNNDDSYGSSNKNKSS 180
Query: 254 LEQFPPPSFGSPIKPNIRGRGISNMRGRQQLSKTNFNQARNPPYNRGAFTNKS---NND- 421
S+GS N G SN + S N + N + G+ N S NND
Sbjct: 181 YGSNNDDSYGSN---NDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSNNNDSYGSNNDD 237
Query: 422 --------RRQFGN---DDYSEDNQQFNYNNQSMVNKRDSRGGFNANRGRNMDSRNFTQH 568
+ +G+ D Y N +Y + N DS G N N+ S N +
Sbjct: 238 SYGSSNKKKSSYGSNNDDSYGSSNNNDSYGS----NNDDSYGSSNKNKSSYGSSSNDDSY 293
Query: 569 DSWYQEEEISDLQQNQTSY-SQNDYENSDFFDQNYNESNE---------NHEY---DDSG 709
S ++ + ++SY S ND D +Y SN+ N Y +D
Sbjct: 294 GSSNNDDSYGSSNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDS 353
Query: 710 YGEWHANKNRLDFNSQN------------YNQHTTDDISKRDFETTKYPRMEAPNQKYAF 853
YG +NK + + S N Y + D + Y + Y
Sbjct: 354 YGS--SNKKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNRNKNSY-----GSSNYGS 406
Query: 854 DNPDQRMNSQNVQPRN 901
N D S N RN
Sbjct: 407 SNNDDSYGSSNRGGRN 422
Score = 50.4 bits (119), Expect = 7e-06
Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 9/252 (3%)
Frame = +2
Query: 56 NHPPPISSTYETSADPNMMQQSTGDQSMNDYYDQSNKQKYPKPYEYNSSGMKPNQSINSA 235
N+ S + S + ++S+ S ND Y +N Y +S G + S S+
Sbjct: 184 NNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSNNN-DSYGSNNDDSYGSS 242
Query: 236 PKEASYLEQFPPPSFGSPIKPNIRGRGISNMRGRQQLSKTNFNQARNPPYNRGAFTNKSN 415
K+ S S+GS + G + G +K+++ + N ++ + +N
Sbjct: 243 NKKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNKNKSSYGSSSNDD----SYGSSNN 298
Query: 416 NDRRQFGNDDYSEDNQQFNYNNQSMVNKRDSRGGFNANRGR----NMDSRNFTQHDSWYQ 583
+D +G+ + + + N ++ N DS G N + N DS DS+
Sbjct: 299 DD--SYGSSNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGS 356
Query: 584 EEEISDLQQNQTSYSQNDYENSDFF----DQNYNESNEN-HEYDDSGYGEWHANKNRLDF 748
+ + S N+D + D +Y SN N + Y S YG + + +
Sbjct: 357 SNKKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNRNKNSYGSSNYGSSNNDDSYGSS 416
Query: 749 NSQNYNQHTTDD 784
N NQ+ DD
Sbjct: 417 NRGGRNQYGGDD 428
Score = 48.5 bits (114), Expect = 3e-05
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 13/228 (5%)
Frame = +2
Query: 140 NDYYDQSNKQKYPKPYEYNSSGMKPNQSINSAPKEASYLEQFPPPSFGSPIKPNIRGRGI 319
ND Y +N Y +S G + S S+ K+ S S+GS + G
Sbjct: 93 NDSYGSNNNDSYGSNNN-DSYGSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYGSNN 151
Query: 320 SNMRGRQQLSKTNFNQARNPPYNRGAFTNKSNNDRRQFG--NDDYSEDNQQFNYNNQSMV 493
++ G S N + N + G+ SN ++ +G NDD N +Y + +
Sbjct: 152 NDSYG----SNNNDSYGSNNDDSYGS----SNKNKSSYGSNNDDSYGSNNDDSYGSSN-- 201
Query: 494 NKRDSRGGFNANR--GRNMDSRNFTQHDSW--YQEEEISDLQQNQTSYSQNDYENSDFFD 661
K+ S G N + N DS +DS+ ++ + ++SY N+ D
Sbjct: 202 KKKSSYGSSNNDSYGSNNDDSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNN-------D 254
Query: 662 QNYNESNENHEY---DDSGYGEWHANKNRLDF----NSQNYNQHTTDD 784
+Y SN N Y +D YG +NKN+ + N +Y DD
Sbjct: 255 DSYGSSNNNDSYGSNNDDSYGS--SNKNKSSYGSSSNDDSYGSSNNDD 300
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 49.3 bits (116), Expect = 2e-05
Identities = 52/262 (19%), Positives = 104/262 (39%), Gaps = 17/262 (6%)
Frame = +2
Query: 20 NAPQSYDQGQAFNHPPPISSTYETSADPNMMQQSTGDQSMNDYYDQSNKQKYPKPYEYNS 199
N S D+ Q N+ ++ Y+ + +M + + N ++ +N + N
Sbjct: 239 NKMGSQDKNQNSNNNFYMNYNYQNRKN-SMNNNMNNNMNNNMNHNMNNNMNHNMNNNMNH 297
Query: 200 S-GMKPNQSINSAPKEASYLEQFPPPSFGSPIKPNIRGRGISNMRGRQQLSKTNFNQARN 376
+ N ++N+ + L+ P++ + +K ++ +N ++ NF Q N
Sbjct: 298 NMNNNMNHNMNNNMNNINSLDSDMSPNYHAHVKMSMMNYN-NNESNTANPNQMNFEQTNN 356
Query: 377 PPYNRGAFTNKSNNDRRQFGNDDYSED-----------NQQFNYNNQSMVNKRDSRGGFN 523
R NN+ +G DD + ++ YNN + N + N
Sbjct: 357 DNMKR------ENNNMNNYGYDDNTVHVNNNTPSTDFFSRAVGYNNNYLNNNNNMNSAVN 410
Query: 524 AN--RGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQND-YENSDFFDQN--YNESNEN 688
N G NM + N + + +++ + N + + N+ N++ + N YN N N
Sbjct: 411 NNSSNGNNMKNENSENKNVADNNDSLNNNKNNNNNINMNESINNNNTLNNNNEYNNQNNN 470
Query: 689 HEYDDSGYGEWHANKNRLDFNS 754
+ DD +GE +K +D NS
Sbjct: 471 EDEDDDDWGELGEDK-YIDINS 491
Score = 41.6 bits (96), Expect = 0.003
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 3/175 (1%)
Frame = +2
Query: 404 NKSNNDRRQFGNDDYSEDNQ-QFNYNNQSMVNKRDSRGGF--NANRGRNMDSRNFTQHDS 574
N NN+ GN +Y N+ + N N + N+ ++ F N N M SRN + +
Sbjct: 4 NNKNNNNNDDGNINYQNTNEFKDNKKNMNFKNQYNNNYKFDENMNNSNTMHSRN-SNVEE 62
Query: 575 WYQEEEISDLQQNQTSYSQNDYENSDFFDQNYNESNENHEYDDSGYGEWHANKNRLDFNS 754
+ I N +Y+ S F + N NE NEN Y G KN+ D N
Sbjct: 63 HLRNNSIDMNNSNINNYTNQQTRFSSFME-NENE-NENKNYHTGGMNNNIHFKNKYDNN- 119
Query: 755 QNYNQHTTDDISKRDFETTKYPRMEAPNQKYAFDNPDQRMNSQNVQPRNGGVFSK 919
N + TD+ +K D T Y N +N D N N+ G +K
Sbjct: 120 -NSSMKNTDN-NKTD---TSYNMKGTINNDN--NNMDYLRNINNINEYKGSAKNK 167
Score = 41.2 bits (95), Expect = 0.004
Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 21/221 (9%)
Frame = +2
Query: 311 RGISNMRGRQQLSK----TNFNQARNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQF-NY 475
R I+N+ + +K TN+ N + + N + N+ N++ + +N F NY
Sbjct: 152 RNINNINEYKGSAKNKFYTNYMNKNNLKFTQNNNDNMNINEDNNNNNNNNNNNNGVFSNY 211
Query: 476 NNQSMVNKRDSRGGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYEN-SD 652
N +M N+ +S N RN+++ N ++ + + N Y +Y+N +
Sbjct: 212 QNNNM-NRNNS-----INIKRNLNNNNNINNNMNKMGSQDKNQNSNNNFYMNYNYQNRKN 265
Query: 653 FFDQNYN---ESNENHEYDDSGYGEWHANKNRLDFNSQNYNQHTT--------DDISKRD 799
+ N N +N NH +++ + N N N+ N+N + D+S
Sbjct: 266 SMNNNMNNNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNNINSLDSDMSPNY 325
Query: 800 FETTKYPRMEAPNQKYAFDNPDQ----RMNSQNVQPRNGGV 910
K M N + NP+Q + N+ N++ N +
Sbjct: 326 HAHVKMSMMNYNNNESNTANPNQMNFEQTNNDNMKRENNNM 366
Score = 40.4 bits (93), Expect = 0.007
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Frame = +2
Query: 539 NMDSRNFTQHDSWYQEEEISDLQQNQTSYS-QNDYENSDFFDQNYNESNENHEYDDSGYG 715
N + N D + ++ + N+ + + +N Y N+ FD+N N SN H + +
Sbjct: 3 NNNKNNNNNDDGNINYQNTNEFKDNKKNMNFKNQYNNNYKFDENMNNSNTMHSRNSNV-- 60
Query: 716 EWHANKNRLDFNSQNYNQHTTDDISKRDFETTKYPRMEAPNQKYAFDNPDQRMNSQNVQP 895
E H N +D N+ N N +T + F + E N+ Y + ++ +N
Sbjct: 61 EEHLRNNSIDMNNSNINNYTN---QQTRFSSFMENENENENKNYHTGGMNNNIHFKNKYD 117
Query: 896 RN 901
N
Sbjct: 118 NN 119
Score = 35.0 bits (79), Expect = 0.30
Identities = 44/217 (20%), Positives = 83/217 (38%), Gaps = 21/217 (9%)
Frame = +2
Query: 299 NIRGRGISNMRGRQQLSKTNFNQARNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFNY- 475
N + + +N + + ++ +N +RN N + + N Y+ +F+
Sbjct: 32 NFKNQYNNNYKFDENMNNSNTMHSRNSNVEEHLRNNSIDMNNSNINN--YTNQQTRFSSF 89
Query: 476 --NNQSMVNKRDSRGGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYS-----QN 634
N NK GG N N+ +N ++D+ + +D + TSY+ N
Sbjct: 90 MENENENENKNYHTGGMN----NNIHFKN--KYDNNNSSMKNTDNNKTDTSYNMKGTINN 143
Query: 635 DYENSDFFDQNYNESNENHEYDDSGYGEWHANKNRLDF-------------NSQNYNQHT 775
D N D+ +N N NE + + + NKN L F N+ N N +
Sbjct: 144 DNNNMDYL-RNINNINEYKGSAKNKFYTNYMNKNNLKFTQNNNDNMNINEDNNNNNNNNN 202
Query: 776 TDDISKRDFETTKYPRMEAPNQKYAFDNPDQRMNSQN 886
++ +++ R + N K +N + N+ N
Sbjct: 203 NNNGVFSNYQNNNMNRNNSINIKRNLNNNNNINNNMN 239
>sp|P47459|P65H_MYCGE Proline-rich P65 protein homolog
Length = 372
Score = 48.1 bits (113), Expect = 3e-05
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Frame = +2
Query: 320 SNMRGRQQLSKTNFNQARNPPY---NRGAFTNKSNND--RRQFGNDDYSEDNQQFNYNNQ 484
S + QQ S FNQ +N Y N+ F N+S D ++QF + + Q + NQ
Sbjct: 6 SAFQQNQQASNQPFNQDQNQYYQDPNQQQF-NQSGFDPNQQQFNQPGFDPNQQYYQDPNQ 64
Query: 485 SMVNKRDSRGGFNANRGRNMDSRN-------FTQHDSWYQEEEISDLQQNQTSYSQNDYE 643
N+ GF+ N+ D F + +YQ+ + Q NQ + QN Y
Sbjct: 65 QQFNQ----AGFDQNQQYYQDPNQQQFNQPGFDPNQQYYQDP--NQQQFNQAGFDQNQYY 118
Query: 644 NSDFFDQNYNES--NENHEYDDSGYGEWHANKNRLDFNSQNYNQ 769
D Q +N+S ++N Y D ++ N+ D N+Q +NQ
Sbjct: 119 Q-DPNQQQFNQSGFDQNQYYQDPNQQQF--NQPSFDLNNQQFNQ 159
Score = 43.1 bits (100), Expect = 0.001
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 3/187 (1%)
Frame = +2
Query: 128 DQSMNDYYDQSNKQKYPKPYEYNSSGMKPNQSINSAPKEASYLEQFPPPSFGSPIKPNIR 307
+Q N YY N+Q ++N SG PNQ +QF P F
Sbjct: 20 NQDQNQYYQDPNQQ------QFNQSGFDPNQ------------QQFNQPGFD-------- 53
Query: 308 GRGISNMRGRQQLSKTNFNQA---RNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFNYN 478
N + Q ++ FNQA +N Y + + +++QF + + Q +
Sbjct: 54 ----PNQQYYQDPNQQQFNQAGFDQNQQYYQ-------DPNQQQFNQPGFDPNQQYYQDP 102
Query: 479 NQSMVNKRDSRGGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYENSDFF 658
NQ N + GF+ N+ ++ + Q + D Q Q + D N F
Sbjct: 103 NQQQFN----QAGFDQNQYYQDPNQQQFNQSGFDQNQYYQDPNQQQFNQPSFDLNNQQFN 158
Query: 659 DQNYNES 679
+N+S
Sbjct: 159 QPGFNQS 165
Score = 41.6 bits (96), Expect = 0.003
Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 7/180 (3%)
Frame = +2
Query: 365 QARNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFNYNNQSMVNKRDSRGGFNANRGRNM 544
QA N P+N+ + +++QF + + QQFN + GF+ N+
Sbjct: 13 QASNQPFNQDQNQYYQDPNQQQFNQSGFDPNQQQFN------------QPGFDPNQQYYQ 60
Query: 545 DSRN-------FTQHDSWYQEEEISDLQQNQTSYSQNDYENSDFFDQNYNESNENHEYDD 703
D F Q+ +YQ+ NQ ++Q ++ +Q Y + +++
Sbjct: 61 DPNQQQFNQAGFDQNQQYYQDP-------NQQQFNQPGFDP----NQQYYQDPNQQQFNQ 109
Query: 704 SGYGEWHANKNRLDFNSQNYNQHTTDDISKRDFETTKYPRMEAPNQKYAFDNPDQRMNSQ 883
+G+ + N+ D N Q +NQ F+ +Y + PNQ+ F+ P +N+Q
Sbjct: 110 AGFDQ---NQYYQDPNQQQFNQ--------SGFDQNQY--YQDPNQQ-QFNQPSFDLNNQ 155
Score = 34.7 bits (78), Expect = 0.39
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +2
Query: 47 QAFNHP--PPISSTYETSADPNMMQQSTGDQSMNDYYDQSNKQKYPKP-YEYNSSGMKPN 217
Q FN P P Y+ DPN Q + N YY N+Q++ + ++ N PN
Sbjct: 85 QQFNQPGFDPNQQYYQ---DPNQQQFNQAGFDQNQYYQDPNQQQFNQSGFDQNQYYQDPN 141
Query: 218 QSINSAPKEASYLEQFPPPSF 280
Q + P +QF P F
Sbjct: 142 QQQFNQPSFDLNNQQFNQPGF 162
Score = 32.7 bits (73), Expect = 1.5
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +2
Query: 35 YDQGQAFNHPPPISSTYETSADPNMM-QQSTGDQSMNDY-YDQSNKQKYPKPYEYNSSGM 208
+DQ Q + P + DPN Q Q N +DQ+ + P ++N SG
Sbjct: 72 FDQNQQYYQDPNQQQFNQPGFDPNQQYYQDPNQQQFNQAGFDQNQYYQDPNQQQFNQSGF 131
Query: 209 KPNQSINSAPKEASYLEQFPPPSF 280
NQ + +QF PSF
Sbjct: 132 DQNQYYQDPNQ-----QQFNQPSF 150
Score = 30.4 bits (67), Expect = 7.3
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Frame = +2
Query: 98 DPNMMQQSTGDQSMNDYYDQSNKQKYPKP------YEYNSSGMKPNQSINSAPKE 244
DPN Q + N YY N+Q++ +P ++N G + + P+E
Sbjct: 120 DPNQQQFNQSGFDQNQYYQDPNQQQFNQPSFDLNNQQFNQPGFNQSPAFEITPQE 174
>sp|P23637|ERF2_PICPI Eukaryotic peptide chain release factor GTP-binding subunit (ERF2)
(Translation release factor 3) (ERF3) (ERF-3)
(Omnipotent suppressor protein 2)
Length = 741
Score = 48.1 bits (113), Expect = 3e-05
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Frame = +2
Query: 425 RQFGNDDYSEDNQQFNYNNQSMVNKRDSRGGFNANRG--RNMDSRNFTQHDSWYQEEEIS 598
+QFG Y + QQ NYN Q N ++RGG++ NRG N + ++ ++S+
Sbjct: 59 QQFGQ--YGQ--QQQNYN-QGGYNNYNNRGGYSNNRGGYNNSNRGGYSNYNSYNTNSNQG 113
Query: 599 DLQQNQTSYSQNDYENSDFFDQNYNESNENHEYDDSGYGEWHANKNRLDFNSQNYNQHTT 778
+Y+ N Y N++ ++ NYN+ N+ G + + + ++Y +
Sbjct: 114 GYSNYNNNYANNSYNNNNNYNNNYNQGYNNYNSQPQGQDQQQETGSG-QMSLEDYQKQQK 172
Query: 779 DDISKRDFETTK 814
+ ++K + + K
Sbjct: 173 ESLNKLNTKPKK 184
Score = 39.3 bits (90), Expect = 0.016
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
Frame = +2
Query: 167 QKYPKPYEYNSSGMKPN-QSIN-SAPKEASYLEQFPP---PSFGSPIKPNIRGRGISNMR 331
Q + ++N++ + N Q+IN +AP ++ + P +F +P I G+
Sbjct: 3 QDQQQQQQFNANNLAGNVQNINLNAPAYDPAVQSYIPNTAQAFVPSAQPYIPGQQEQQF- 61
Query: 332 GRQQLSKTNFNQARNPPY-NRGAFTNKSN--NDRRQFGNDDYSEDNQQFNYNNQSMVNKR 502
G+ + N+NQ Y NRG ++N N+ + G +Y+ N N S N
Sbjct: 62 GQYGQQQQNYNQGGYNNYNNRGGYSNNRGGYNNSNRGGYSNYNSYNTNSNQGGYSNYNNN 121
Query: 503 DSRGGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYEN 646
+ +N N N N+ Q + Y + QQ +T Q E+
Sbjct: 122 YANNSYNNNNNYN---NNYNQGYNNYNSQPQGQDQQQETGSGQMSLED 166
Score = 34.3 bits (77), Expect = 0.51
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Frame = +2
Query: 581 QEEEISDLQQNQTSYSQ---NDYENSDFFDQNYNESNENHEYDDSGYGEWHANKNRLDFN 751
QE++ Q Q +Y+Q N+Y N + N N ++ S Y ++ N N+ ++
Sbjct: 57 QEQQFGQYGQQQQNYNQGGYNNYNNRGGYSNNRGGYNNSNRGGYSNYNSYNTNSNQGGYS 116
Query: 752 SQNYNQHTTDDISKRDFETTKYPRMEAPNQKYAFDNPDQRMNSQNVQPR 898
+ N N Y N +N +Q N+ N QP+
Sbjct: 117 NYNNN----------------YANNSYNNNNNYNNNYNQGYNNYNSQPQ 149
>sp|Q92804|RBP56_HUMAN TATA-binding protein associated factor 2N (RNA-binding protein 56)
(TAFII68) (TAF(II)68)
Length = 592
Score = 47.0 bits (110), Expect = 8e-05
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 5/162 (3%)
Frame = +2
Query: 314 GISNMRGRQQLSKTNFNQARNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFNYNNQSMV 493
G G +Q S + + + Y + + +S + Q + Y ++ ++ QS
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQAS---QSYSGYGQTTDSSYGQNYSGYSSYGQSQS 61
Query: 494 NKRDSRGGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYENSDFFDQNYN 673
S GG+ + + + + E SY Q DY D +DQ
Sbjct: 62 GYSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSG 121
Query: 674 ESNENHEYDD-SGYGEWH--ANKNRLDFNSQ--NYNQHTTDD 784
YD+ S Y + H ++N+ ++SQ NY+ HT DD
Sbjct: 122 YDQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHTQDD 163
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III largest subunit
Length = 2339
Score = 46.6 bits (109), Expect = 1e-04
Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 12/263 (4%)
Frame = +2
Query: 8 SAYNNAPQSYDQGQAFNHPPPISSTYE---TSADPNMMQQSTGDQSMNDYYDQSNK---Q 169
+A A Y Q + +S Y+ S D ++Q GD ++N Y +N
Sbjct: 972 TAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALNPSYIDNNNTYLD 1031
Query: 170 KYPKPYEYNSSGMKPNQSINSAPKEASYLEQFPPPSFGSPIKPNIRGRG-ISNMRG-RQQ 343
++ K +++ S I+S+ SY + P P+++ + SNM
Sbjct: 1032 QFDKVFDHIVS-------ISSSHLLLSYKNKIP-------YLPHVQHQNKTSNMNNIYNN 1077
Query: 344 LSKTNFNQA-RNPPYNRGAFTNKSNNDRRQFG---NDDYSEDNQQFNYNNQSMVNKRDSR 511
++ N N + R+ YN + N NN+ N++ + +N N +N+S+++ DS
Sbjct: 1078 MNNINNNDSNRSIIYNNDSNMNNINNNDSNMNSIHNNNSNMNNIHNNDSNRSIIHNNDS- 1136
Query: 512 GGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYENSDFFDQNYNESNENH 691
N N N DS + H++ I + N++ ND S+ + N+SN N+
Sbjct: 1137 ---NMNSIHNNDSNMNSIHNNNSNMNNIHNNDSNRSIIHNND---SNMNSIHNNDSNNNN 1190
Query: 692 EYDDSGYGEWHANKNRLDFNSQN 760
Y D + + N++ + N N
Sbjct: 1191 NYKDCTHNPYICNESLIIRNIMN 1213
Score = 38.5 bits (88), Expect = 0.027
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Frame = +2
Query: 350 KTNFNQARNPPYNRGAFTNKSNNDRRQFGNDDYSEDNQQFNYNNQSMVNKRDSRGGFNAN 529
K NF+ RN N T+ +NND ND+ + DN N N+ + + N
Sbjct: 1513 KENFD--RN---NYKMITDNNNNDNNNNNNDNNNNDNNNNNNNSNNNNYYYNLHDDVNNL 1567
Query: 530 RGRNMDSRNFTQHDSWYQEEEISDLQQNQTSYSQNDYENSDFFDQNYNESNENHEYDDSG 709
N ++ + + E+E ++ T+ S +N+DF D+ +N NEN D+
Sbjct: 1568 GVTNYNTNIYPNDCNGIYEKETNN--NELTTNSNMCDKNNDFSDEFFNNINENDLLYDNK 1625
Query: 710 YGEWHANKNRLDFNS-----QNYNQH 772
Y KN + F S ++Y QH
Sbjct: 1626 YYR-QIFKNVIGFVSVFEYVESYKQH 1650
Score = 37.0 bits (84), Expect = 0.078
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
Frame = +2
Query: 407 KSNNDRRQFGNDD--YSEDNQQFNYNNQSMVNKRDSRGGFNANRGRNMDSRNFTQHDSWY 580
K N + + NDD +S D+ + ++ R N D N+
Sbjct: 1469 KLNRWKTKMDNDDNYWSSDDDSIIAKKIIKIKNKEKRKYHPKEEKENFDRNNYKM----- 1523
Query: 581 QEEEISDLQQNQTSYSQNDYENSDFFDQNYNESNENHEYDDSGYGEWHANKNRLDFNSQN 760
I+D N + + ND N+D + N N +N N+ Y+ H + N L + N
Sbjct: 1524 ----ITDNNNNDNNNNNNDNNNNDNNNNNNNSNNNNYYYN------LHDDVNNLGVTNYN 1573
Query: 761 YNQHTTD 781
N + D
Sbjct: 1574 TNIYPND 1580
>sp|P04282|GAG17_DROME Retrovirus-related Gag polyprotein from copia-like transposable
element 17.6
Length = 439
Score = 46.2 bits (108), Expect = 1e-04
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 6/194 (3%)
Frame = +2
Query: 131 QSMNDYYDQSNK-QKYPKPY-EYNSSGMKPNQSINSAPKEASYLEQFPPPSFGSPIKPNI 304
+S N +QSN +KYP P+ YNS I P + L + P P +P
Sbjct: 213 KSFNQNTNQSNNIRKYPTPFLHYNSPIPYQAPQIYQTPPTNNPLYRHPIPYHPNPNNVFQ 272
Query: 305 RGRGISNMRGRQQLSKTNFNQARNPPYNRGAFTNKSNN--DRRQFGNDDYSEDNQQFNYN 478
+ + + QQ + NQ N +R F NN D+ +FG + NQQ N
Sbjct: 273 PSQQNNVFQPSQQNNAFQPNQRTNFT-SRPIFNTNRNNAFDQNRFGQQPQYQ-NQQSTQN 330
Query: 479 NQSMVNKRDSRGGFNANRGRNMDSRNFT--QHDSWYQEEEISDLQQNQTSYSQNDYENSD 652
+ S V R + AN G+ S + T Q D++YQ+ D T Y++SD
Sbjct: 331 SSSYVPNRPIKRLRPANSGQTGMSVDETLYQEDAFYQQCVPYDYFYYPT------YDHSD 384
Query: 653 FFDQNYNESNENHE 694
++ +N + +EN++
Sbjct: 385 YYPENQYQIDENNQ 398
Score = 37.4 bits (85), Expect = 0.060
Identities = 62/290 (21%), Positives = 106/290 (36%), Gaps = 28/290 (9%)
Frame = +2
Query: 104 NMMQQSTGDQSMNDYYDQSNKQKYPKPYEYNSSGMKPNQSINSAPKEASYLEQFPPP--S 277
N++Q+ + +N KQ + KP +S N +++ + ++P P
Sbjct: 184 NLLQEKGMYEQINHTSTHVQKQNFSD---------KPQKSFNQNTNQSNNIRKYPTPFLH 234
Query: 278 FGSPI---KPNIRGRGISNMRGRQQLSKTNFNQARNP-PYNRGAFTNKSNNDRRQFGNDD 445
+ SPI P I Q TN R+P PY+ NN + ++
Sbjct: 235 YNSPIPYQAPQI-----------YQTPPTNNPLYRHPIPYH-----PNPNNVFQPSQQNN 278
Query: 446 YSEDNQQFNYNNQSMVNKRDSRGGFNANRGRNMDSRNFTQHDSWYQEEEISDLQQNQTSY 625
+ +QQ N + SR FN NR D F Q + ++ QN +SY
Sbjct: 279 VFQPSQQNNAFQPNQRTNFTSRPIFNTNRNNAFDQNRFGQQPQYQNQQS----TQNSSSY 334
Query: 626 SQND---------------------YENSDFFDQNYNESNENH-EYDDSGYGEWHANKNR 739
N Y+ F+ Q + YD S Y + N+ +
Sbjct: 335 VPNRPIKRLRPANSGQTGMSVDETLYQEDAFYQQCVPYDYFYYPTYDHSDY--YPENQYQ 392
Query: 740 LDFNSQNYNQHTTDDISKRDFETTKYPRMEAPNQKYAFDNPDQRMNSQNV 889
+D N+QN + T + + + + T E PN + A + Q + + N+
Sbjct: 393 IDENNQNLQR--TQQLQQINTDETNNDNQE-PNVEQAENFQPQALENPNI 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,480,004
Number of Sequences: 369166
Number of extensions: 1789598
Number of successful extensions: 7266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6436
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9414689480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)