Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_G08
(866 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 129 1e-29
sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, si... 122 2e-27
sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, si... 122 2e-27
sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, sign... 122 2e-27
sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, si... 122 2e-27
sp|O01367|HOW_DROME Held out wings protein (KH-domain prote... 85 2e-16
sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppres... 79 1e-14
sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein... 57 7e-08
sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein... 56 1e-07
sp|P42083|YKCA_CAEEL Hypothetical protein B0280.11 in chrom... 50 8e-06
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33
Length = 308
Score = 129 bits (323), Expect = 1e-29
Identities = 64/134 (47%), Positives = 93/134 (69%), Gaps = 7/134 (5%)
Frame = +3
Query: 24 KTKVRTKVDIPVEAYPNFNFVGKLLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQEL 203
K K+ ++ +PV+ +P +NF+GKLLGP G T+K +Q++T TK+SILG GS+R+ KE+EL
Sbjct: 71 KVKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEEL 130
Query: 204 LNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIP--DPN-----EQAPG 362
NSGD KY HL ++LH++I SI +P+EA+ ++YAL E+KK + P DPN G
Sbjct: 131 RNSGDVKYAHLNEQLHIEIISIASPAEAHARMAYALTEIKKYITPEEDPNYMMMAGHGAG 190
Query: 363 QMPMVTPLMGGPNP 404
M + +MGGP P
Sbjct: 191 PMMGMGGMMGGPGP 204
>sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 122 bits (305), Expect = 2e-27
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Frame = +3
Query: 21 KKTKVRTKVDIPVEAYPNFNFVGKLLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQE 200
K K++ +V IPV+ YP FNFVGK+LGP G T+K +QE+T K+S+LG GS+R+ KE+E
Sbjct: 152 KNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEE 211
Query: 201 LLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPD-PNEQAPGQMPMV 377
L GDPKY HL LH+ I+ G P EAY +++A+ EVKK ++PD ++ Q +
Sbjct: 212 LRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 271
Query: 378 TPLMGGPNPGFG 413
+ L G P P G
Sbjct: 272 SYLNGVPEPSRG 283
>sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 122 bits (305), Expect = 2e-27
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Frame = +3
Query: 21 KKTKVRTKVDIPVEAYPNFNFVGKLLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQE 200
K K++ +V IPV+ YP FNFVGK+LGP G T+K +QE+T K+S+LG GS+R+ KE+E
Sbjct: 152 KNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEE 211
Query: 201 LLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPD-PNEQAPGQMPMV 377
L GDPKY HL LH+ I+ G P EAY +++A+ EVKK ++PD ++ Q +
Sbjct: 212 LRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 271
Query: 378 TPLMGGPNPGFG 413
+ L G P P G
Sbjct: 272 SYLNGVPEPSRG 283
>sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 122 bits (305), Expect = 2e-27
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Frame = +3
Query: 21 KKTKVRTKVDIPVEAYPNFNFVGKLLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQE 200
K K++ +V IPV+ YP FNFVGK+LGP G T+K +QE+T K+S+LG GS+R+ KE+E
Sbjct: 152 KNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEE 211
Query: 201 LLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPD-PNEQAPGQMPMV 377
L GDPKY HL LH+ I+ G P EAY +++A+ EVKK ++PD ++ Q +
Sbjct: 212 LRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 271
Query: 378 TPLMGGPNPGFG 413
+ L G P P G
Sbjct: 272 SYLNGVPEPSRG 283
>sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, signal transduction associated
protein 1 (Src-associated in mitosis 68 kDa protein)
(Sam68)
Length = 433
Score = 122 bits (305), Expect = 2e-27
Identities = 65/147 (44%), Positives = 89/147 (60%), Gaps = 10/147 (6%)
Frame = +3
Query: 21 KKTKVRTKVDIPVEAYPNFNFVGKLLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQE 200
K K++ +V IPV+ YP FNFVGK+LGP G T+K +QE+T K+S+LG GS+R+ KE+E
Sbjct: 135 KNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEE 194
Query: 201 LLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPDPNEQAPGQ----- 365
L GDPKY HL LH+ I+ G P EAY +++A+ EVKK ++PD + +
Sbjct: 195 LRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLEL 254
Query: 366 -----MPMVTPLMGGPNPGFGAMRTQP 431
+P T GGP G GA P
Sbjct: 255 SYLNGVPEPTRGRGGPVRGRGAAPPPP 281
>sp|O01367|HOW_DROME Held out wings protein (KH-domain protein KH93F) (Putative
RNA-binding protein) (Muscle-specific protein) (Wings
held out protein) (Struthio protein) (Quaking-related
93F)
Length = 405
Score = 85.1 bits (209), Expect = 2e-16
Identities = 43/108 (39%), Positives = 68/108 (62%)
Frame = +3
Query: 42 KVDIPVEAYPNFNFVGKLLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNSGDP 221
KV +PV +P+FNFVG++LGP G T K ++++T K+ + G GS+R+ +KE N G P
Sbjct: 140 KVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKED--ANRGKP 197
Query: 222 KYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPDPNEQAPGQ 365
+ HL D LH+ I + A ++ A+AEV+K+++P QA G+
Sbjct: 198 NWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVP----QAEGE 241
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ
line development protein 1)
Length = 463
Score = 79.3 bits (194), Expect = 1e-14
Identities = 36/104 (34%), Positives = 61/104 (58%)
Frame = +3
Query: 33 VRTKVDIPVEAYPNFNFVGKLLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNS 212
+ K+ +P YP++NFVG++LGP G T K +++ T K+ + G GS+R +K +E +
Sbjct: 205 ITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMR--DKSKESAHR 262
Query: 213 GDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIPDP 344
G + HL D LH+ + + + + AL +VKK++IP P
Sbjct: 263 GKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAP 306
>sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch
point binding protein mBBP) (BBP)
Length = 639
Score = 57.0 bits (136), Expect = 7e-08
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Frame = +3
Query: 27 TKVRTKVDIPVEAYPNFNFVGKLLGPAGKTLKTVQEQTNTKMSILGAGSLRNPE---KEQ 197
T+V KV IP + YP NFVG L+GP G TLK ++++ N K+ I G GS++ + K+
Sbjct: 134 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDG 193
Query: 198 ELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVM---IPDPNEQ 353
++L D + LH + + N E N+ A+ +++ ++ I P +Q
Sbjct: 194 QMLPGED-------EPLHALVTA--NTME---NVKKAVEQIRNILKQGIETPEDQ 236
>sp|Q64213|SF01_MOUSE Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian
branch point binding protein mBBP) (BBP) (CW17)
Length = 653
Score = 56.2 bits (134), Expect = 1e-07
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Frame = +3
Query: 27 TKVRTKVDIPVEAYPNFNFVGKLLGPAGKTLKTVQEQTNTKMSILGAGSLRNPE---KEQ 197
T+V KV IP + YP NFVG L+GP G TLK ++++ N K+ I G GS+ + K+
Sbjct: 134 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVEEGKVGRKDG 193
Query: 198 ELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVM---IPDPNEQ 353
++L D + LH + + N E N+ A+ +++ ++ I P +Q
Sbjct: 194 QMLPGED-------EPLHALVTA--NTME---NVKKAVEQIRNILKQGIETPEDQ 236
>sp|P42083|YKCA_CAEEL Hypothetical protein B0280.11 in chromosome III
Length = 634
Score = 50.1 bits (118), Expect = 8e-06
Identities = 30/97 (30%), Positives = 51/97 (52%)
Frame = +3
Query: 42 KVDIPVEAYPNFNFVGKLLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNSGDP 221
KV P E N N VG+L+GP G T++ +++ K+ I G G ++ KE+ L
Sbjct: 516 KVFFPPETANNTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRER--V 573
Query: 222 KYNHLRDRLHLQIDSIGNPSEAYYNISYALAEVKKVM 332
+ HL++ +H+ I + EA S L+ +KK++
Sbjct: 574 GWEHLKEPIHVMISVRSDSEEA---ASEKLSSIKKML 607
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,248,565
Number of Sequences: 369166
Number of extensions: 1802631
Number of successful extensions: 4432
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4425
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)