Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_G04
(393 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13573|SNW1_HUMAN Nuclear protein SkiP (Ski-interacting ... 88 5e-18
sp|Q9CSN1|SNW1_MOUSE Nuclear protein SkiP (Ski-interacting ... 88 5e-18
sp|P39736|BX42_DROME Puff-specific protein Bx42 74 1e-13
sp|P54705|SNWA_DICDI Protein snwA 64 1e-10
sp|Q09882|PRP45_SCHPO Pre-mRNA splicing factor prp45 (Compl... 60 2e-09
sp|Q22836|YGH1_CAEEL Hypothetical protein T27F2.1 in chromo... 52 6e-07
sp|P19814|TGON3_RAT Trans-Golgi network integral membrane p... 34 0.092
sp|Q8DI68|ACSF2_SYNEL Magnesium-protoporphyrin IX monomethy... 32 0.60
sp|O81772|PER46_ARATH Peroxidase 46 precursor (Atperox P46)... 31 1.0
sp|O04378|SYP23_ARATH Syntaxin 23 (AtSYP23) (AtPLP) (AtPEP1... 30 1.3
>sp|Q13573|SNW1_HUMAN Nuclear protein SkiP (Ski-interacting protein) (SNW1 protein)
(Nuclear receptor coactivator NCoA-62)
Length = 536
Score = 88.2 bits (217), Expect = 5e-18
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 16/140 (11%)
Frame = +2
Query: 2 DISEQIALGQANPLLNRLKDDNVYDRRLMDKTGGLDSGFLAGEDEMYNIYDKPL---FNQ 172
DISE IALG NP R ++ YD+RL +++ G+DSGF GEDE+YN+YD+ +
Sbjct: 387 DISEVIALGVPNP---RTSNEVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDM 443
Query: 173 NKSVYKAPRHTDSSAL-EDIETYQKGKKFVSEKE---------ARDAPVAYEKDDPFELS 322
+S+Y+ ++ D +D+E K +FV +KE R+ PV +E +DPF L
Sbjct: 444 AQSIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFSGSDRRQRGREGPVQFE-EDPFGLD 502
Query: 323 MFLTEVK---GTKRPADDVR 373
FL E K G+KRP+D R
Sbjct: 503 KFLEEAKQHGGSKRPSDSSR 522
>sp|Q9CSN1|SNW1_MOUSE Nuclear protein SkiP (Ski-interacting protein) (SNW1 protein)
Length = 536
Score = 88.2 bits (217), Expect = 5e-18
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 16/140 (11%)
Frame = +2
Query: 2 DISEQIALGQANPLLNRLKDDNVYDRRLMDKTGGLDSGFLAGEDEMYNIYDKPL---FNQ 172
DISE IALG NP R ++ YD+RL +++ G+DSGF GEDE+YN+YD+ +
Sbjct: 387 DISEVIALGVPNP---RTSNEVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDM 443
Query: 173 NKSVYKAPRHTDSSAL-EDIETYQKGKKFVSEKE---------ARDAPVAYEKDDPFELS 322
+S+Y+ ++ D +D+E K +FV +KE R+ PV +E +DPF L
Sbjct: 444 AQSIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFSGSDRKQRGREGPVQFE-EDPFGLD 502
Query: 323 MFLTEVK---GTKRPADDVR 373
FL E K G+KRP+D R
Sbjct: 503 KFLEEAKQHGGSKRPSDSSR 522
>sp|P39736|BX42_DROME Puff-specific protein Bx42
Length = 547
Score = 73.6 bits (179), Expect = 1e-13
Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 16/138 (11%)
Frame = +2
Query: 2 DISEQIALGQANPLLNRLKDDNVYDRRLMDKTGGLDSGFLAGEDEMYNIYDKPLFNQN-- 175
DISEQIALG P + + ++D+RL + T G+DSG+ G+DE YN+YDKP + N
Sbjct: 397 DISEQIALGL--PAKSAGNGETLFDQRLFNTTKGMDSGY--GDDEAYNVYDKPWRDSNTL 452
Query: 176 -KSVYKAPRHTDSSAL-EDIETYQKGKKFVSEKE-----------ARDAPVAYEK-DDPF 313
+Y+ + DS D++ K+FV +K+ R PV +EK +DPF
Sbjct: 453 GAHIYRPSKQADSDNYGGDLDAIVNTKRFVPDKQFSGASKEAAAGQRSGPVEFEKEEDPF 512
Query: 314 ELSMFLTEVKGTKRPADD 367
L FL K + A++
Sbjct: 513 GLDQFLNMAKKAPKRAEE 530
>sp|P54705|SNWA_DICDI Protein snwA
Length = 685
Score = 63.5 bits (153), Expect = 1e-10
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 25/134 (18%)
Frame = +2
Query: 2 DISEQIALGQANPLLNRLKDDNVYDRRLMDKTGGLDSGFLAGEDEMYNIYDKPLFN--QN 175
DISE+IALGQA+ + +D++YD+RL +++ L SGF G D+ YN+Y KPLF +
Sbjct: 553 DISEKIALGQASI---KRTEDSIYDQRLFNQSESLTSGF--GNDDSYNVYSKPLFGGAVS 607
Query: 176 KSVYK-APRHTDSSALEDIETYQK---------------GKKFVSEKEARD--APVAYEK 301
S+Y+ D+++++D+ + + K+F ++D PVA+EK
Sbjct: 608 NSIYRPKSNQEDNTSIQDVLSNSRFGKEGGSGSGGVPRPNKEFSGTDRSKDRTGPVAFEK 667
Query: 302 -----DDPFELSMF 328
DDPF F
Sbjct: 668 EKKKSDDPFGFDDF 681
>sp|Q09882|PRP45_SCHPO Pre-mRNA splicing factor prp45 (Complexed with cdc5 protein 13)
(Cell cycle control protein cwf13) (Transcriptional
coregulator snw1)
Length = 557
Score = 60.1 bits (144), Expect = 2e-09
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 18/135 (13%)
Frame = +2
Query: 2 DISEQIALGQANPLLNRLKDDNVYDRRLMDKTGGLDSGFLAGEDEMYNIYDKPLFNQNKS 181
D++E++ALG + P ++ D + D RL ++ GL SGF +++ YN+YDKP S
Sbjct: 427 DVAERVALGLSKPSMS---SDTMIDSRLFNQASGLGSGFQ--DEDSYNVYDKPWRAAPSS 481
Query: 182 VYKAP-----RHTDSSA-LEDIETYQK-------GKKFVSEK---EARDAPVAYEKD--D 307
P R D+SA LE I + + KKF E+R PV +EKD D
Sbjct: 482 TLYRPGATLSRQVDASAELERITSESRYDVLGNAHKKFKGSDEVVESRAGPVTFEKDIAD 541
Query: 308 PFELSMFLTEVKGTK 352
PF + FL V K
Sbjct: 542 PFGVDTFLNNVSSKK 556
>sp|Q22836|YGH1_CAEEL Hypothetical protein T27F2.1 in chromosome V
Length = 535
Score = 51.6 bits (122), Expect = 6e-07
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Frame = +2
Query: 2 DISEQIALGQANPLLNRLKDDNVYDRRLMDKTGGLDSGFLAGEDEMYNIYD---KPLFNQ 172
DISE+I LG + R + +D+RL DKT GLDSG A +D+ YN YD + +
Sbjct: 390 DISEKIVLGLPDTNQKRTGEPQ-FDQRLFDKTQGLDSG--AMDDDTYNPYDAAWRGGDSV 446
Query: 173 NKSVYKAPRHTDSSAL-EDIE-TYQKGKKFVSEKEARDA--------PVAYEKD-DPFEL 319
+ VY+ ++ D+ D++ ++ +FV++K A PV +EKD D F L
Sbjct: 447 QQHVYRPSKNLDNDVYGGDLDKIIEQKNRFVADKGFSGAEGSSRGSGPVQFEKDQDVFGL 506
Query: 320 SMFLTEVKGTKRPAD 364
S K KR D
Sbjct: 507 SSLFEHTKEKKRGGD 521
>sp|P19814|TGON3_RAT Trans-Golgi network integral membrane protein TGN38 precursor
Length = 357
Score = 34.3 bits (77), Expect = 0.092
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +2
Query: 89 DKTGGLDSGFLAGEDEMYNIYDKPLF-NQNKSVYKAPRHTDSSALEDIETYQKGKK--FV 259
DKT G DS G D DKP + NK K P +T++ ++ ++ +KG+K +
Sbjct: 155 DKTSGGDSNKPTGSDN-----DKPTGGDSNKPTSKVPSNTETPKIDKVQLTEKGQKPTLI 209
Query: 260 SEKEARDAPVAYEKDDPFELSMFLTEVKGTK--RPADDVRTQ 379
S+ E+ + D F L KG K P +DV T+
Sbjct: 210 SKTESGEKLAG---DSDFSLK----PEKGDKSSEPTEDVETK 244
>sp|Q8DI68|ACSF2_SYNEL Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2
(Mg-protoporphyrin IX monomethyl ester oxidative cyclase
2)
Length = 354
Score = 31.6 bits (70), Expect = 0.60
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -2
Query: 233 FQYLPMHLNLYVLELYKQIYFD*IMVYHRYYTFHPHRPKIQNPNHQFYPLISYHKR 66
+ + P+ LY + L ++I Y RY + H K +P H FYPL +Y +R
Sbjct: 155 YTFFPLPWVLYTVYLSEKIG------YWRYIIIYRHLEK--HPEHSFYPLFNYFER 202
>sp|O81772|PER46_ARATH Peroxidase 46 precursor (Atperox P46) (ATP48)
Length = 326
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 62 DNVYDRRLMDKTGGLDSGFL--AGEDEMYNIYDKPLFNQNKSVYKAPRHTDSSALEDIET 235
DN Y LM+K +S L + + E ++D + +N +K TDS+ +ED T
Sbjct: 222 DNSYAETLMNKCSSSESSSLTVSNDPETSAVFDNQYY-RNLETHKGLFQTDSALMEDNRT 280
Query: 236 YQKGKKFVSEKEA 274
++ S++E+
Sbjct: 281 RTMVEELASDEES 293
>sp|O04378|SYP23_ARATH Syntaxin 23 (AtSYP23) (AtPLP) (AtPEP12-like protein)
Length = 255
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +2
Query: 167 NQNKSVYKAPRHTDSSALEDIETYQKGKKFVSEKEARDAPVAYEKDDPFELSMFLTEVKG 346
NQ K + A D A+ ++ +QK ++ +E+E AP+ ++ P + +V G
Sbjct: 98 NQKKKIVDAKLAKDFQAV--LKEFQKAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNG 155
Query: 347 TKRP 358
K P
Sbjct: 156 DKHP 159
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,847,617
Number of Sequences: 369166
Number of extensions: 811588
Number of successful extensions: 2217
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2209
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)