Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_G03
(907 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q97SQ2|DPO3_STRPN DNA polymerase III polC-type (PolIII) 32 1.9
sp|Q8DRA5|DPO3_STRR6 DNA polymerase III polC-type (PolIII) 32 2.4
sp|P63984|DPO3_STRA5 DNA polymerase III polC-type (PolIII) ... 32 3.2
sp|P20511|YVAB_VACCC Hypothetical 10.7 kDa protein 30 7.1
sp|Q9U3K5|INX2_CAEEL Innexin-2 30 7.1
sp|Q8NZB5|DPO3_STRP8 DNA polymerase III polC-type (PolIII) 30 9.3
sp|O22585|AMYB_MEDSA Beta-amylase (1,4-alpha-D-glucan malto... 30 9.3
>sp|Q97SQ2|DPO3_STRPN DNA polymerase III polC-type (PolIII)
Length = 1463
Score = 32.3 bits (72), Expect = 1.9
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 463 ERLRSHDATDR*IVNCNLMLSENIGKDSMKFHSTIYFKNQILTNNFVKI----NVRYF*A 630
E H TD +N +L+ ++ K +K H+TIY KNQ+ N K+ N +YF
Sbjct: 587 EVAEKHGVTDLARLNIDLISPDSYKKARIK-HATIYVKNQVGLKNIFKLVSLSNTKYFEG 645
Query: 631 SP 636
P
Sbjct: 646 VP 647
>sp|Q8DRA5|DPO3_STRR6 DNA polymerase III polC-type (PolIII)
Length = 1463
Score = 32.0 bits (71), Expect = 2.4
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 463 ERLRSHDATDR*IVNCNLMLSENIGKDSMKFHSTIYFKNQILTNNFVKI----NVRYF 624
E H TD +N +L+ ++ K +K H+TIY KNQ+ N K+ N +YF
Sbjct: 587 EVAEKHGVTDLARLNIDLISPDSYKKARIK-HATIYVKNQVGLKNIFKLVSLSNTKYF 643
>sp|P63984|DPO3_STRA5 DNA polymerase III polC-type (PolIII)
sp|P63983|DPO3_STRA3 DNA polymerase III polC-type (PolIII)
Length = 1468
Score = 31.6 bits (70), Expect = 3.2
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 445 FISLRFERLRSHDATDR*IVNCNLMLSENIGKDSMKFHSTIYFKNQILTNNFVKI----N 612
FI L+ E + D T+ +N L+ ++ K +K H+TIY +NQ+ N K+ N
Sbjct: 587 FIFLK-EARENRDVTNLMELNTKLVAEDSYKKARIK-HATIYVQNQVGLKNIFKLVSLSN 644
Query: 613 VRYF 624
V+YF
Sbjct: 645 VKYF 648
>sp|P20511|YVAB_VACCC Hypothetical 10.7 kDa protein
Length = 86
Score = 30.4 bits (67), Expect = 7.1
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +3
Query: 636 RVLVHLLRVYHQKPHHNKRLSWVRILTTFLYLLNLITKKF*FVLILKVLVQLHISQN 806
R L +LLR Y Q HN R+ +L L+LLNL+ + ++L +LV ++ Q+
Sbjct: 19 RHLPNLLRRYQQLHVHNNRMEIFLVLLQRLHLLNLLL--WPLYVLLHLLVVQYVQQH 73
>sp|Q9U3K5|INX2_CAEEL Innexin-2
Length = 419
Score = 30.4 bits (67), Expect = 7.1
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = +2
Query: 200 HKHSKK---ITNLMLEQLYLKYNTFELYIYIFNFAHLLKFSFSAL*RR 334
H+H+ I N+++E+LY+ + + +++++ A ++ F+F L RR
Sbjct: 253 HQHTVSCIMILNMIIEKLYICFYFWLIFVFVVTTAGMIHFAFQILFRR 300
>sp|Q8NZB5|DPO3_STRP8 DNA polymerase III polC-type (PolIII)
Length = 1465
Score = 30.0 bits (66), Expect = 9.3
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +1
Query: 445 FISLRFERLRSHDATDR*IVNCNLMLSENIGKDSMKFHSTIYFKNQILTNNFVKI----N 612
FI LR R H + +N +L+ ++ K +K H+TIY +NQ+ N K+ N
Sbjct: 584 FIFLRDAR-EKHGIKNLLQLNTDLVAEDSYKKARIK-HATIYVQNQVGLKNMFKLVSLSN 641
Query: 613 VRYF*ASP 636
++YF P
Sbjct: 642 IKYFEGVP 649
>sp|O22585|AMYB_MEDSA Beta-amylase (1,4-alpha-D-glucan maltohydrolase)
Length = 496
Score = 30.0 bits (66), Expect = 9.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 717 TFLYLLNLITKKF*FVLILKVLVQLHISQNYCVSPAKTTLT*PPL 851
T+L L + + ++ F + K +V++H Q+YC P K PPL
Sbjct: 418 TYLRLSDDLMQQSNFDIFKKFVVKMHADQDYCSDPEKYNHGIPPL 462
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,546,651
Number of Sequences: 369166
Number of extensions: 1626623
Number of successful extensions: 3095
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3094
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)