Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_F06
(444 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 206 2e-53
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 197 1e-50
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 196 3e-50
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 195 3e-50
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 193 2e-49
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 193 2e-49
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 192 2e-49
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 192 4e-49
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 189 2e-48
sp|Q07760|RL23_TOBAC 60S ribosomal protein L23 187 9e-48
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 206 bits (524), Expect = 2e-53
Identities = 97/118 (82%), Positives = 110/118 (93%)
Frame = +1
Query: 43 FRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELR 222
FRISLGLPV AV+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELR
Sbjct: 14 FRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELR 73
Query: 223 KKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 396
KKVLQGVVIRQRK ++RKDGT I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 74 KKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 197 bits (500), Expect = 1e-50
Identities = 96/118 (81%), Positives = 105/118 (88%)
Frame = +1
Query: 43 FRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELR 222
FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 73
Query: 223 KKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 396
KKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 196 bits (497), Expect = 3e-50
Identities = 95/118 (80%), Positives = 105/118 (88%)
Frame = +1
Query: 43 FRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELR 222
FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELR 73
Query: 223 KKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 396
KKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 195 bits (496), Expect = 3e-50
Identities = 95/118 (80%), Positives = 105/118 (88%)
Frame = +1
Query: 43 FRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELR 222
FRISLGLPV AVINCADN+GAKN+YIISV G K +LNRLPAA VGDMV+ +VKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELR 73
Query: 223 KKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 396
KKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 193 bits (490), Expect = 2e-49
Identities = 92/118 (77%), Positives = 105/118 (88%)
Frame = +1
Query: 43 FRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELR 222
FRISLGLPV AV+NCADN+GAKN+++I+V G K RLNRLP+A VGDM V SVKKGKPELR
Sbjct: 14 FRISLGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELR 73
Query: 223 KKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 396
KKVLQ VV+RQRK Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP+
Sbjct: 74 KKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPR 131
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 193 bits (490), Expect = 2e-49
Identities = 91/118 (77%), Positives = 105/118 (88%)
Frame = +1
Query: 43 FRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELR 222
FRISLGLPV AVINCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELR 73
Query: 223 KKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 396
KKV+ VVIRQRK ++R+DG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 74 KKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 192 bits (489), Expect = 2e-49
Identities = 91/118 (77%), Positives = 105/118 (88%)
Frame = +1
Query: 43 FRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELR 222
FRISLGLPV AV+NCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELR
Sbjct: 14 FRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELR 73
Query: 223 KKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 396
KKV+ VVIRQRK ++R+DG I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 74 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 192 bits (487), Expect = 4e-49
Identities = 94/117 (80%), Positives = 102/117 (87%)
Frame = +1
Query: 43 FRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELR 222
FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKP LR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLR 73
Query: 223 KKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWP 393
KKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWP 130
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 189 bits (480), Expect = 2e-48
Identities = 85/118 (72%), Positives = 107/118 (90%)
Frame = +1
Query: 43 FRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELR 222
+R++LGLPV A++NCADNSGAKN+YI+SVFGT +RLNRLPAA+ GDMV+ +VKKGKP+LR
Sbjct: 13 YRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLR 72
Query: 223 KKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 396
KK++ +V+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGPVAKECAD+WP+
Sbjct: 73 KKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23
Length = 140
Score = 187 bits (475), Expect = 9e-48
Identities = 88/118 (74%), Positives = 104/118 (88%)
Frame = +1
Query: 43 FRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELR 222
FR+SLGLPVAA INCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKP+LR
Sbjct: 14 FRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLR 73
Query: 223 KKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 396
KKV+ VV+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGP+ KECAD+WP+
Sbjct: 74 KKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,325,380
Number of Sequences: 369166
Number of extensions: 951255
Number of successful extensions: 2392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2320
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)