Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_F01
(494 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94546|ATU_DROME Another transcription unit protein 50 3e-06
sp|Q9QX47|SON_MOUSE SON protein 33 0.28
sp|P18583|SON_HUMAN SON protein (SON3) (Negative regulatory... 33 0.37
sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subu... 32 0.63
sp|Q00839|HNRPU_HUMAN Heterogenous nuclear ribonucleoprotei... 30 2.4
sp|P08551|NFL_MOUSE Neurofilament triplet L protein (68 kDa... 30 4.1
sp|Q9UZ14|SYT_PYRAB Threonyl-tRNA synthetase (Threonine--tR... 29 5.3
sp|Q86NP2|NELFA_DROME Negative elongation factor A homolog 29 5.3
>sp|Q94546|ATU_DROME Another transcription unit protein
Length = 725
Score = 50.1 bits (118), Expect = 3e-06
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Frame = +3
Query: 3 DSFTHRKLTLSLADKTHKAAKVKLLPFAGENPDVRQQEMIKREEERMKASLXXXXXXXXX 182
+SFTH+K+T+SLAD++ K + +K+L G++P + ++ EE +++ ++
Sbjct: 519 ESFTHKKMTMSLADRSSKTSGIKILTQVGKDPTTDRPTQLREEEAKLRQAMRNQHKSLPK 578
Query: 183 XXXXXXXEL-----TAAFLEQQKDDENNPHAISLSDIKKKARPSS 302
E T+++ + D+ N AISLS IK + + S
Sbjct: 579 KKKPGAGEPLIGGGTSSYQHDEGSDDEN--AISLSAIKNRYKKGS 621
>sp|Q9QX47|SON_MOUSE SON protein
Length = 2404
Score = 33.5 bits (75), Expect = 0.28
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 265 RCRISRRRRVPAPQSKRKEPSICPRRMRRKRSP--*AISQIPLRKRKERKLELSQTTK 432
R R RRR +R+ SI P R+RR R+P S+ P+R+++ R E ++ K
Sbjct: 1969 RSRTPSRRRRSRSAVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPK 2026
>sp|P18583|SON_HUMAN SON protein (SON3) (Negative regulatory element-binding protein)
(NRE-binding protein) (DBP-5) (Bax antagonist selected in
saccharomyces 1) (BASS1)
Length = 2426
Score = 33.1 bits (74), Expect = 0.37
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 265 RCRISRRRRVPAPQSKRKEPSICPRRMRRKRSP--*AISQIPLRKRKERKLELSQTTK 432
R R RRR +R+ SI P R+RR R+P S+ P+R+++ R E ++ K
Sbjct: 1991 RSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPK 2048
>sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subunit 4 (SNAPc subunit 4)
(snRNA-activating protein complex 190 kDa subunit)
(SNAPc 190 kDa subunit) (Proximal sequence
element-binding transcription factor alpha subunit)
(PSE-binding factor alpha subunit) (PTF alpha subunit)
Length = 1469
Score = 32.3 bits (72), Expect = 0.63
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 104 PPAGDDQARGGANEGLLASRESAQTDAGAREPPRTHRSVPRAAEGR*EQSSRYFAVGYQE 283
PP G ++GG+ E + + + + P R H VPR+A+ +R Q
Sbjct: 600 PPKGSSASQGGSKEASTTAAAPGEETSPVQVPARAHGPVPRSAQASHSADTRPAGAEKQA 659
Query: 284 -EGASQLL 304
EG +LL
Sbjct: 660 LEGGRRLL 667
>sp|Q00839|HNRPU_HUMAN Heterogenous nuclear ribonucleoprotein U (hnRNP U) (Scaffold
attachment factor A) (SAF-A) (pp120)
Length = 824
Score = 30.4 bits (67), Expect = 2.4
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 14/126 (11%)
Frame = +2
Query: 113 GDDQARGGANEGLLASRESAQTDAGAREPPRTHRSVPRAAEGR*EQSSRYFAVGYQEEGA 292
GD++ G G + Q A ++ P+ R + A G+ + FAV GA
Sbjct: 146 GDEEEGAGDENG--HGEQQPQPPATQQQQPQQQRGAAKEAAGKSSGPTSLFAVTVAPPGA 203
Query: 293 SQLLNQKEKNHRYVLDG*GGR--------------GVHERFLRSPSEKERKES*NYLRRR 430
Q Q + G GGR G +R ++ P E + Y+
Sbjct: 204 RQGQQQAGGKKKAEGGGGGGRPGAPAGDGKTEQKGGDKKRGVKRpreDHGRGYFEYIEEN 263
Query: 431 KFQRIK 448
K+ R K
Sbjct: 264 KYSRAK 269
>sp|P08551|NFL_MOUSE Neurofilament triplet L protein (68 kDa neurofilament protein)
(Neurofilament light polypeptide) (NF-L)
Length = 543
Score = 29.6 bits (65), Expect = 4.1
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +2
Query: 164 ESAQTDAGAREPPRTHRSVPRAAEGR*EQSSRYFAVGYQEEGASQLLNQKEKNHRYVLDG 343
E+ + + EPP +EG E+ + G +EEGA + K+++ +
Sbjct: 460 EATKAEEAKDEPP---------SEGEAEEEEKEKEEGEEEEGAEEEEAAKDESEDTKEEE 510
Query: 344 *GGRGVHERFLRSPSEKERKES 409
GG G E S E++++ES
Sbjct: 511 EGGEGEEEDTKESEEEEKKEES 532
>sp|Q9UZ14|SYT_PYRAB Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 625
Score = 29.3 bits (64), Expect = 5.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 204 ELTAAFLEQQKDDENNPHAISLSDIKKKARPSSSIK 311
E+ AF+ +K DE NP +SL I++ ++ + +K
Sbjct: 37 EVLVAFISVEKVDEKNPEEVSLKAIEEISKVAEQVK 72
>sp|Q86NP2|NELFA_DROME Negative elongation factor A homolog
Length = 1248
Score = 29.3 bits (64), Expect = 5.3
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 107 ADIGVLpreGQQLNLGGLVSLVGER 33
+D+G+LP E Q LN L+S+VG++
Sbjct: 135 SDLGMLPLECQYLNKNALISVVGQQ 159
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,418,397
Number of Sequences: 369166
Number of extensions: 781540
Number of successful extensions: 2172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2170
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)