Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_E13
(373 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52877|SERC_SPIOL Phosphoserine aminotransferase, chloro... 85 6e-17
sp|P91856|SERC_CAEEL Probable phosphoserine aminotransferas... 83 2e-16
sp|Q96255|SERC_ARATH Phosphoserine aminotransferase, chloro... 82 5e-16
sp|P10658|SERC_RABIT Phosphoserine aminotransferase (PSAT) ... 79 3e-15
sp|Q99K85|SERC_MOUSE Phosphoserine aminotransferase (PSAT) ... 79 4e-15
sp|Q59196|SERC_BACCI Phosphoserine aminotransferase (PSAT) 78 7e-15
sp|Q7MV30|SERC_PORGI Phosphoserine aminotransferase (PSAT) 77 9e-15
sp|Q9VAN0|SERC_DROME Probable phosphoserine aminotransferas... 77 1e-14
sp|Q7NVP1|SERC_CHRVO Phosphoserine aminotransferase (PSAT) 76 2e-14
sp|Q9Y617|SERC_HUMAN Phosphoserine aminotransferase (PSAT) 75 6e-14
>sp|P52877|SERC_SPIOL Phosphoserine aminotransferase, chloroplast precursor (PSAT)
Length = 430
Score = 84.7 bits (208), Expect = 6e-17
Identities = 42/92 (45%), Positives = 66/92 (71%)
Frame = +1
Query: 4 SKAVMMYACIDESDGFYNCPVDVEHRSLVNVVLRIKDNDEQLENEFVLFAKSKYNIIEIK 183
+KA ++Y IDES+GFY CPV+ RSL+NV ++ ++ LE +F+ A +K ++ +K
Sbjct: 338 AKAQVLYDAIDESNGFYKCPVEKSVRSLMNVPFTLEKSE--LEGDFIKEA-AKEKMVALK 394
Query: 184 GHRAIGGLRISLYNSIPMEFVEILIHCMKEFQ 279
GHR++GG+R S+YN++P+ VE L+ MKEFQ
Sbjct: 395 GHRSVGGMRASIYNAMPLAGVEKLVAFMKEFQ 426
>sp|P91856|SERC_CAEEL Probable phosphoserine aminotransferase (PSAT)
Length = 370
Score = 82.8 bits (203), Expect = 2e-16
Identities = 42/95 (44%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Frame = +1
Query: 7 KAVMMYACIDESDGFYNCPVDVEHRSLVNVVLRI--KDNDEQLENEFVLFAKSKYNIIEI 180
K+ M+Y ID S+GFY+C VD +RS++NV RI +++LE +F L + N+I +
Sbjct: 273 KSGMIYDIIDNSNGFYHCAVDKRYRSIMNVCFRIGGPSGNDELEEKF-LKGSIERNMISL 331
Query: 181 KGHRAIGGLRISLYNSIPMEFVEILIHCMKEFQNI 285
KGHR++GG+R SLYN+I +E ++L M EFQ +
Sbjct: 332 KGHRSVGGIRASLYNAISVEETQVLATWMNEFQKL 366
>sp|Q96255|SERC_ARATH Phosphoserine aminotransferase, chloroplast precursor (PSAT)
Length = 430
Score = 81.6 bits (200), Expect = 5e-16
Identities = 40/91 (43%), Positives = 66/91 (72%)
Frame = +1
Query: 7 KAVMMYACIDESDGFYNCPVDVEHRSLVNVVLRIKDNDEQLENEFVLFAKSKYNIIEIKG 186
KA ++Y I+ES+GF+ CPV+ RSL+NV ++ ++ LE EF+ A +K ++++KG
Sbjct: 339 KADLLYNAIEESNGFFRCPVEKSVRSLMNVPFTLEKSE--LEAEFIKEA-AKEKMVQLKG 395
Query: 187 HRAIGGLRISLYNSIPMEFVEILIHCMKEFQ 279
HR++GG+R S+YN++P+ VE L+ MK+FQ
Sbjct: 396 HRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 426
>sp|P10658|SERC_RABIT Phosphoserine aminotransferase (PSAT) (Endometrial
progesterone-induced protein) (EPIP)
Length = 370
Score = 79.0 bits (193), Expect = 3e-15
Identities = 41/92 (44%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Frame = +1
Query: 7 KAVMMYACIDESDGFYNCPVDVEHRSLVNVVLRIKD--NDEQLENEFVLFAKSKYNIIEI 180
K+ M+Y ID S GFY CPV+ +RS++N+ RI + DE LE F L + ++I +
Sbjct: 274 KSQMIYEIIDNSQGFYVCPVEPRNRSMMNIPFRIGNAKGDEALEKRF-LDKALELHMISL 332
Query: 181 KGHRAIGGLRISLYNSIPMEFVEILIHCMKEF 276
KGHR++GG+R+SLYN++ +E V+ L MK F
Sbjct: 333 KGHRSVGGVRVSLYNAVTIEDVQKLASFMKNF 364
>sp|Q99K85|SERC_MOUSE Phosphoserine aminotransferase (PSAT) (Endometrial
progesterone-induced protein) (EPIP)
Length = 370
Score = 78.6 bits (192), Expect = 4e-15
Identities = 43/92 (46%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Frame = +1
Query: 7 KAVMMYACIDESDGFYNCPVDVEHRSLVNVVLRIKD--NDEQLENEFVLFAKSKYNIIEI 180
K+ M+Y ID S GFY CPV+ ++RS +N+ RI + DE LE F L + N+I +
Sbjct: 274 KSQMIYEIIDNSQGFYVCPVERQNRSRMNIPFRIGNAKGDEALEKRF-LDKAVELNMISL 332
Query: 181 KGHRAIGGLRISLYNSIPMEFVEILIHCMKEF 276
KGHR++GG+R SLYN++ E VE L MK F
Sbjct: 333 KGHRSVGGIRASLYNAVTTEDVEKLAAFMKNF 364
>sp|Q59196|SERC_BACCI Phosphoserine aminotransferase (PSAT)
Length = 362
Score = 77.8 bits (190), Expect = 7e-15
Identities = 40/91 (43%), Positives = 59/91 (64%)
Frame = +1
Query: 7 KAVMMYACIDESDGFYNCPVDVEHRSLVNVVLRIKDNDEQLENEFVLFAKSKYNIIEIKG 186
KA ++Y ID+S GFY VDV+ RS +N+ R+ E+LE EFV A + + +KG
Sbjct: 271 KASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS--EELEKEFVK-ASEQEGFVGLKG 327
Query: 187 HRAIGGLRISLYNSIPMEFVEILIHCMKEFQ 279
HR++GGLR S+YN++P E E L+ M+ F+
Sbjct: 328 HRSVGGLRASIYNAVPYESCEALVQFMEHFK 358
>sp|Q7MV30|SERC_PORGI Phosphoserine aminotransferase (PSAT)
Length = 360
Score = 77.4 bits (189), Expect = 9e-15
Identities = 41/91 (45%), Positives = 60/91 (65%)
Frame = +1
Query: 7 KAVMMYACIDESDGFYNCPVDVEHRSLVNVVLRIKDNDEQLENEFVLFAKSKYNIIEIKG 186
KA ++Y ID S F V+ E RS++N +KD ++LE EF FA S+ ++ IKG
Sbjct: 269 KAALIYDAIDSSKIFRGT-VNPEDRSIMNACFVMKDEYKELEKEFATFAASR-GMVGIKG 326
Query: 187 HRAIGGLRISLYNSIPMEFVEILIHCMKEFQ 279
HR++GG R SLYN++P+E V+ L+ MKEF+
Sbjct: 327 HRSVGGFRASLYNALPIESVQSLVSVMKEFE 357
>sp|Q9VAN0|SERC_DROME Probable phosphoserine aminotransferase (PSAT)
Length = 364
Score = 77.0 bits (188), Expect = 1e-14
Identities = 40/94 (42%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Frame = +1
Query: 1 ASKAVMMYACIDESDGFYNCPVDVEHRSLVNVVLRI--KDNDEQLENEFVLFAKSKYNII 174
A+K+ ++Y I++S+GFY CPVDV RS +NV RI D+ LE EF+ A+++ +I
Sbjct: 266 AAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFRIGSASGDDALEKEFLSKAEAE-GMI 324
Query: 175 EIKGHRAIGGLRISLYNSIPMEFVEILIHCMKEF 276
++KGHR++GG+R SLYN++ + + L + M F
Sbjct: 325 QLKGHRSVGGIRASLYNAVTLAETQQLANLMLAF 358
>sp|Q7NVP1|SERC_CHRVO Phosphoserine aminotransferase (PSAT)
Length = 362
Score = 76.3 bits (186), Expect = 2e-14
Identities = 38/90 (42%), Positives = 64/90 (71%)
Frame = +1
Query: 7 KAVMMYACIDESDGFYNCPVDVEHRSLVNVVLRIKDNDEQLENEFVLFAKSKYNIIEIKG 186
KA ++Y ID S GFY+ ++ RS +NVV +++D E L+ F+L A+ K + ++KG
Sbjct: 271 KAGLLYHVIDSSGGFYSTHIEQPFRSKMNVVFKLRD--EALDEIFLLEAR-KNGLAQLKG 327
Query: 187 HRAIGGLRISLYNSIPMEFVEILIHCMKEF 276
HRA+GG+R S+YN++P+E V+ L++ M++F
Sbjct: 328 HRAVGGMRASIYNAMPIEGVKSLVNFMQDF 357
>sp|Q9Y617|SERC_HUMAN Phosphoserine aminotransferase (PSAT)
Length = 370
Score = 74.7 bits (182), Expect = 6e-14
Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Frame = +1
Query: 7 KAVMMYACIDESDGFYNCPVDVEHRSLVNVVLRIKD--NDEQLENEFVLFAKSKYNIIEI 180
K+ +Y ID S GFY CPV+ ++RS +N+ RI + D+ LE F L + N++ +
Sbjct: 274 KSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRF-LDKALELNMLSL 332
Query: 181 KGHRAIGGLRISLYNSIPMEFVEILIHCMKEF 276
KGHR++GG+R SLYN++ +E V+ L MK+F
Sbjct: 333 KGHRSVGGIRASLYNAVTIEDVQKLAAFMKKF 364
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,077,417
Number of Sequences: 369166
Number of extensions: 642487
Number of successful extensions: 1790
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)