Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_E06
(873 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 273 3e-73
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 270 5e-72
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 268 1e-71
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 266 6e-71
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 262 8e-70
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 257 3e-68
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 256 4e-68
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 255 1e-67
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 255 1e-67
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 254 2e-67
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 273 bits (699), Expect = 3e-73
Identities = 146/288 (50%), Positives = 184/288 (63%), Gaps = 6/288 (2%)
Frame = +3
Query: 6 LSLVVVAI-----TAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYI 170
LSLV+ A +AVP KF N L+ +W +K T R Y + RR +WE+N+K I
Sbjct: 3 LSLVLAAFCLGIASAVP-KFDQN--LDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMI 59
Query: 171 QKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPAS 350
+ HN EY GKH +++ +N F DMTNEEF+ + +G + + +G + P + LP S
Sbjct: 60 ELHNGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFLD-LPKS 117
Query: 351 VDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXX 530
VDWR+KGYVTPVKNQ+QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 118 VDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQG 177
Query: 531 XXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLA 707
M AF+Y+K+ G++SE YPY A D CK P V TGFT + E L
Sbjct: 178 CNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALM 237
Query: 708 NAVATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHGVLAVGYG 851
AVATVGP+SVA+DAGH+SFQ YKS IY E CS+ LDHGVL VGYG
Sbjct: 238 KAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYG 285
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 270 bits (689), Expect = 5e-72
Identities = 143/284 (50%), Positives = 176/284 (61%), Gaps = 2/284 (0%)
Frame = +3
Query: 6 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 185
L+ + + I + KF + LN +W +K T R Y + RR +WE+N+K I+ HN
Sbjct: 7 LTALCLGIASAAPKF--DQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELHNR 64
Query: 186 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 365
EY GKH +++ +N F DMTNEEF+ G K +G + P +P SVDWR+
Sbjct: 65 EYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKMFQEPL-FAEIPKSVDWRE 122
Query: 366 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 545
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGL 182
Query: 546 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 719
MDNAFRY+KD G++SE YPY D TC P TGF D+ Q E L AVA
Sbjct: 183 MDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTGFVDL-PQREKALMKAVA 241
Query: 720 TVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHGVLAVGYG 851
T+GP+SVAIDAGH SFQ YKS IY + CS+ LDHGVL VGYG
Sbjct: 242 TLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYG 285
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 268 bits (686), Expect = 1e-71
Identities = 141/283 (49%), Positives = 173/283 (61%), Gaps = 1/283 (0%)
Frame = +3
Query: 6 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 185
L L + + + L +W +K R Y + RR +WE+N+K I+ HN
Sbjct: 5 LILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQ 64
Query: 186 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 365
EY GKH++++ +N F DMT+EEF+ G KP +G + P P SVDWR+
Sbjct: 65 EYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR-KGKVFQEPLFYEA-PRSVDWRE 122
Query: 366 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 545
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK RLIS SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGL 182
Query: 546 MDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVAT 722
MD AF+Y++D G++SE YPY AT+ +CK NP V TGF DI Q E L AVAT
Sbjct: 183 MDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EKALMKAVAT 241
Query: 723 VGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHGVLAVGYG 851
VGP+SVAIDAGH SF YK IY E CS+ +DHGVL VGYG
Sbjct: 242 VGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 284
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 266 bits (680), Expect = 6e-71
Identities = 144/284 (50%), Positives = 173/284 (60%), Gaps = 2/284 (0%)
Frame = +3
Query: 6 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 185
L+++ + + + K N L+ W +K T R Y + RR +WE+N K I HN
Sbjct: 7 LTVLCLGVASAAPKLDPN--LDAHWHQWKATHRRLYGMNEEEWRRAVWEKNKKIIDLHNQ 64
Query: 186 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 365
EY GKH + + +N F DMTNEEF+ G K +G + P + V P SVDW +
Sbjct: 65 EYSEGKHAFRMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKLFHEPLLVDV-PKSVDWTK 122
Query: 366 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 545
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGL 182
Query: 546 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 719
MDNAF+YIKD G++SE YPY ATD +C P TGF DI Q E L AVA
Sbjct: 183 MDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGFVDI-PQREKALMKAVA 241
Query: 720 TVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHGVLAVGYG 851
TVGP+SVAIDAGH SFQ YKS IY + CS LDHGVL VGYG
Sbjct: 242 TVGPISVAIDAGHTSFQFYKSGIYYDPDCSCKDLDHGVLVVGYG 285
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 262 bits (670), Expect = 8e-70
Identities = 141/284 (49%), Positives = 176/284 (61%), Gaps = 2/284 (0%)
Frame = +3
Query: 6 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 185
L+ + + I + K N L+ +W +K T GR Y + RR +WE+N+K I+ HN
Sbjct: 7 LTALCLGIASAAPKLDQN--LDADWYKWKATHGRLYGMNEEGWRRAVWEKNMKMIELHNQ 64
Query: 186 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 365
EY GKH +S+ +N F DMTNEEF+ G K +G + + V P SVDWR+
Sbjct: 65 EYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKVFHESLVLEV-PKSVDWRE 122
Query: 366 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 545
KGYVT VKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGL 182
Query: 546 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 719
MDNAF+Y+KD G+++E YPY + +C P TGF DI Q E L AVA
Sbjct: 183 MDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGFVDI-PQREKALMKAVA 241
Query: 720 TVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHGVLAVGYG 851
TVGP+SVAIDAGH+SFQ YKS IY + CS+ LDHGVL VGYG
Sbjct: 242 TVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYG 285
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 257 bits (656), Expect = 3e-68
Identities = 129/289 (44%), Positives = 177/289 (61%)
Frame = +3
Query: 6 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 185
+ L ++A+ V V ++ W +K + ++Y+ D RR IWE+N+K+IQ+HNL
Sbjct: 1 MRLFILAVLTV----GVLGSNDDLWHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNL 56
Query: 186 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 365
+DLG TY+LGLNQF DMT EEFKAKYL M + N +P +DWR+
Sbjct: 57 RHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAVPDKIDWRE 116
Query: 366 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 545
GYVT VK+Q CGSCW+FS TG++EGQY + ISFSEQQLVDCS L
Sbjct: 117 SGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGL 176
Query: 546 MDNAFRYIKDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVATV 725
M+NA++Y+K G+E+E YPYTA +G C+ N V K TG+ + S +E +L N V
Sbjct: 177 MENAYQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGAR 236
Query: 726 GPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHGVLAVGYGTQIGKKY 872
P +VA+D + F +Y+S IY ++CS +++H VLAVGYGTQ G Y
Sbjct: 237 RPAAVAVDV-ESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDY 284
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 256 bits (655), Expect = 4e-68
Identities = 139/290 (47%), Positives = 178/290 (61%), Gaps = 9/290 (3%)
Frame = +3
Query: 12 LVVVAITAVPQKFSVNSELNEEWETYKTTFGRKY-DELTDITRRLIWEQNLKYIQKHNLE 188
+ ++A+ A+ Q S + EEW TYK + Y +E+ + R I+ +N I KHN
Sbjct: 6 VALLALVALTQAISPLDLIKEEWHTYKLQHRKNYANEVEERFRMKIFNENRHKIAKHNQL 65
Query: 189 YDLGKHTYSLGLNQFADMTNEEFKAKYLG-------IMKTKPTLEGSTYMAPENIGVLPA 347
+ GK +Y LGLN++ADM + EFK G +M+ + L G+TY+ P ++ V P
Sbjct: 66 FAQGKVSYKLGLNKYADMLHHEFKETMNGYNHTLRQLMRERTGLVGATYIPPAHVTV-PK 124
Query: 348 SVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXX 527
SVDWR+ G VT VK+Q CGSCW+FS+TG+LEGQ+FRK L+S SEQ LVDCS
Sbjct: 125 SVDWREHGAVTGVKDQGHCGSCWAFSSTGALEGQHFRKAGVLVSLSEQNLVDCSTKYGNN 184
Query: 528 XXXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDL 704
LMDNAFRYIKD GI++E YPY D +C N + I TGF DI +E +
Sbjct: 185 GCNGGLMDNAFRYIKDNGGIDTEKSYPYEGIDDSCHFNKATIGATDTGFVDIPEGDEEKM 244
Query: 705 ANAVATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHGVLAVGYGT 854
AVAT+GPVSVAIDA H SFQLY +YNE C LDHGVL VGYGT
Sbjct: 245 KKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLVVGYGT 294
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 255 bits (651), Expect = 1e-67
Identities = 138/293 (47%), Positives = 179/293 (61%), Gaps = 3/293 (1%)
Frame = +3
Query: 3 ILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTD-ITRRLIWEQNLKYIQKH 179
+L L VV+ P++ L+ WE +K T ++Y+ D I+RRLIWE+NLKYI H
Sbjct: 6 VLLLPVVSFALYPEEI-----LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIH 60
Query: 180 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGI-MKTKPTLEGSTYMAPENIGVLPASVD 356
NLE LG HTY L +N DMT+EE K G+ + + T PE G P SVD
Sbjct: 61 NLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVD 120
Query: 357 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 536
+R+KGYVTPVKNQ QCGSCW+FS+ G+LEGQ +K +L++ S Q LVDC
Sbjct: 121 YRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCG 178
Query: 537 XXLMDNAFRYI-KDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANA 713
M NAF+Y+ K++GI+SE YPY + +C NP+ KC G+ +I NE L A
Sbjct: 179 GGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRA 238
Query: 714 VATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHGVLAVGYGTQIGKKY 872
VA VGPVSVAIDA SFQ Y +Y +ESC++ L+H VLAVGYG Q G K+
Sbjct: 239 VARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 291
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 255 bits (651), Expect = 1e-67
Identities = 137/293 (46%), Positives = 179/293 (61%), Gaps = 3/293 (1%)
Frame = +3
Query: 3 ILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTD-ITRRLIWEQNLKYIQKH 179
+L L V++ P++ L+ WE +K T ++Y+ D I+RRLIWE+NLKYI H
Sbjct: 6 VLLLPVMSFALYPEEI-----LDTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIH 60
Query: 180 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGI-MKTKPTLEGSTYMAPENIGVLPASVD 356
NLE LG HTY L +N DMTNEE K G+ + + T P+ G P SVD
Sbjct: 61 NLEASLGVHTYELAMNHLGDMTNEEVVQKMTGLKVPASHSRSNDTLYIPDWEGRAPDSVD 120
Query: 357 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 536
+R+KGYVTPVKNQ QCGSCW+FS+ G+LEGQ +K +L++ S Q LVDC
Sbjct: 121 YRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCG 178
Query: 537 XXLMDNAFRYI-KDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANA 713
M NAF+Y+ K++GI+SE YPY + +C NP+ KC G+ +I NE L A
Sbjct: 179 GGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRA 238
Query: 714 VATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHGVLAVGYGTQIGKKY 872
VA VGPVSVAIDA SFQ Y +Y +ESC++ L+H VLAVGYG Q G K+
Sbjct: 239 VARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 291
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 254 bits (650), Expect = 2e-67
Identities = 139/284 (48%), Positives = 174/284 (61%), Gaps = 1/284 (0%)
Frame = +3
Query: 3 ILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHN 182
+L+++ + KF + + EW +K+T R Y + RR IWE+N++ IQ HN
Sbjct: 6 LLAVLCLGTALATPKF--DQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLHN 63
Query: 183 LEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWR 362
EY G+H +S+ +N F DMTNEEF+ G K +G + P + + P SVDWR
Sbjct: 64 GEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHK-KGRLFQEPLMLKI-PKSVDWR 121
Query: 363 QKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXX 542
+KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ LVDCS
Sbjct: 122 EKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGG 181
Query: 543 LMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 719
LMD AF+YIK+ G++SE YPY A DG+CK V TGF DI Q E L AVA
Sbjct: 182 LMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDI-PQQEKALMKAVA 240
Query: 720 TVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHGVLAVGYG 851
TVGP+SVA+DA H S Q Y S IY E +CS+ LDHGVL VGYG
Sbjct: 241 TVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYG 284
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,514,357
Number of Sequences: 369166
Number of extensions: 1837250
Number of successful extensions: 5466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5020
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)