Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_E02
(837 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8SUH6|ZA15_ENCCU Zinc finger C2H2 protein ECU10_0150 44 7e-04
sp|O95625|ZBT11_HUMAN Zinc finger and BTB domain containing... 39 0.018
sp|Q01954|BNC1_HUMAN Zinc finger protein basonuclin-1 35 0.20
sp|Q60436|ARS2_CRIGR Arsenite-resistance protein 2 35 0.20
sp|Q9HAZ2|PRD16_HUMAN PR-domain zinc finger protein 16 (Tra... 35 0.26
sp|Q8N895|ZN366_HUMAN Zinc finger protein 366 35 0.33
sp|P04133|HEX_ADE05 Hexon protein (Late protein 2) 34 0.44
sp|Q9CR24|NUDT8_MOUSE Nucleoside diphosphate-linked moiety ... 34 0.44
sp|Q9NTW7|ZF64B_HUMAN Zinc finger protein 64, isoforms 3 an... 34 0.57
sp|Q92206|ERG1_CANAL Squalene monooxygenase (Squalene epoxi... 34 0.57
>sp|Q8SUH6|ZA15_ENCCU Zinc finger C2H2 protein ECU10_0150
Length = 388
Score = 43.5 bits (101), Expect = 7e-04
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +1
Query: 301 SEENWKCEFCGKEFYSESSIWRHVDNKHHDQLNKAENHV 417
+E ++KC FCGK F SE I+ H +NKH +++ + E +
Sbjct: 295 NENHYKCGFCGKAFESEKFIFNHFNNKHENEIRRIEKGI 333
>sp|O95625|ZBT11_HUMAN Zinc finger and BTB domain containing protein 11
Length = 1053
Score = 38.9 bits (89), Expect = 0.018
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 280 YSMIKKYS-EENWKCEFCGKEFYSESSIWRHVDNKHHDQLNKAENHV 417
YS +K +S E ++C CGKEFY ++ RHV H + +A+ ++
Sbjct: 810 YSHVKSHSVTEPYRCNICGKEFYEKALFRRHVKKATHGKKGRAKQNL 856
>sp|Q01954|BNC1_HUMAN Zinc finger protein basonuclin-1
Length = 994
Score = 35.4 bits (80), Expect = 0.20
Identities = 19/90 (21%), Positives = 40/90 (44%)
Frame = +1
Query: 166 DIVHKFLRDRILPAYDKMGLVIPKDCLWNTERDVFGRQYSMIKKYSEENWKCEFCGKEFY 345
++ + L + A G+ P CL +++ Q+++ ++ E ++C+ C K F
Sbjct: 673 ELQQRLLAGGLFSALSNRGMAFP--CLEDSKELEHVGQHALARQIEENRFQCDICKKTFK 730
Query: 346 SESSIWRHVDNKHHDQLNKAENHVCLGDFC 435
+ S+ HH ++ E H C + C
Sbjct: 731 NACSV-----KIHHKNMHVKEMHTCTVEGC 755
>sp|Q60436|ARS2_CRIGR Arsenite-resistance protein 2
Length = 290
Score = 35.4 bits (80), Expect = 0.20
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +1
Query: 232 PKDCLWNTERDVFGRQYSMIKKYSEENWKCEFCGKEFYSESSIWRHVDNKHHDQLNKAEN 411
P+ + TE++V S ++ ++ W C GK+F + +H+ NKH +++ + +
Sbjct: 115 PRRWVVKTEQEVEKFVTSNTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKK 174
Query: 412 HV 417
V
Sbjct: 175 EV 176
>sp|Q9HAZ2|PRD16_HUMAN PR-domain zinc finger protein 16 (Transcription factor MEL1)
Length = 1276
Score = 35.0 bits (79), Expect = 0.26
Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Frame = +1
Query: 304 EENWKCEFCGKEFYSESSIWRHVDNKHHDQLNKAENHVCLGDFCQLFRCEILSNRYNKPT 483
E+ ++C++C + F S++ RHV N H+ + + F+C + + + +
Sbjct: 976 EQPYRCKYCDRSFSISSNLQRHVRNIHNKE--------------KPFKCHLCNRCFGQ-- 1019
Query: 484 QTNWAKKLCNHNDMNQLKIQCNNIVDNCL-------TNQMANVNVL---RDYLYSTVCDF 633
QTN + L H N Q ++ N L T++ N +L D +S + +F
Sbjct: 1020 QTNLDRHLKKHEHENAPVSQHPGVLTNHLGTSASSPTSESDNHALLDEKEDSYFSEIRNF 1079
Query: 634 LSCEKYWQSSSKS 672
++ + Q+S+++
Sbjct: 1080 IANSEMNQASTRT 1092
>sp|Q8N895|ZN366_HUMAN Zinc finger protein 366
Length = 744
Score = 34.7 bits (78), Expect = 0.33
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
Frame = +1
Query: 145 NCSRSDSDIVHKFLRDRILPAYDKMGLVIPKDCLWNTERDVFGRQYSMIKKYSEENWKCE 324
NCS D + + + + I +C + +Q+S+ K +E+ KC
Sbjct: 394 NCSECDKTFQYPSQLQNHMMKHKDIRPYICSECGMEFVQPHHLKQHSLTHKGVKEH-KCG 452
Query: 325 FCGKEFYSESSIWRHVDNKHHDQLNKAENHVCLGDFC--QLFRCEILSNRYNKPTQTNWA 498
CG+EF +++ RHV H + + H+C F Q + ++ + KP +
Sbjct: 453 ICGREFTLLANMKRHV--LIHTNIRAYQCHLCYKSFVQKQTLKAHMIVHSDVKPFKCKLC 510
Query: 499 KKLCN--HNDMNQLKIQCNNIVDNCL 570
K N HN M + + ++ CL
Sbjct: 511 GKEFNRMHNLMGHMHLHSDSKPFKCL 536
>sp|P04133|HEX_ADE05 Hexon protein (Late protein 2)
Length = 952
Score = 34.3 bits (77), Expect = 0.44
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 12/173 (6%)
Frame = +1
Query: 355 SIWRHVDNKHHDQLNKAENHVC---LGDFC----QLFRCEILSNRYNKPTQTN-WAKKLC 510
S+W + + + ENH L ++C + E L+ K Q N W K
Sbjct: 385 SMWNQAVDSYDPDVRIIENHGTEDELPNYCFPLGGVINTETLTKVKPKTGQENGWEKDAT 444
Query: 511 NHNDMNQLKIQCNNIVDNCLTNQMANVNVLRDYLYSTVCDFLSCE-KYWQSSSK-STNWV 684
+D N++++ N ++ L N N+ R++LYS + +L + KY S+ K S N
Sbjct: 445 EFSDKNEIRVGNNFAMEINL-----NANLWRNFLYSNIALYLPDKLKYSPSNVKISDNPN 499
Query: 685 LNIYIAMAVFIIGLIFYYMALFVR--LNNADSIHFNERSELSHECNRHGINYR 837
Y+ V GL+ Y+ L R L+ D++ + +H N G+ YR
Sbjct: 500 TYDYMNKRVVAPGLVDCYINLGARWSLDYMDNV-----NPFNHHRNA-GLRYR 546
>sp|Q9CR24|NUDT8_MOUSE Nucleoside diphosphate-linked moiety X motif 8, mitochondrial
precursor (Nudix motif 8)
Length = 210
Score = 34.3 bits (77), Expect = 0.44
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 130 AFGETNCSRSDSDIVHKFLRDRILPAYDKMGLVIPKDCLWNTERDVFGRQYSMI 291
+F C D D++H LR+ +++GL +PK+ +W + V+ R+ + I
Sbjct: 65 SFPGGKCDPDDQDVIHTALRE----TQEELGLEVPKEHVWGVLQPVYDREKATI 114
>sp|Q9NTW7|ZF64B_HUMAN Zinc finger protein 64, isoforms 3 and 4 (Zinc finger protein 338)
Length = 645
Score = 33.9 bits (76), Expect = 0.57
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 313 WKCEFCGKEFYSESSIWRHVDNKHHDQLNKAENHVCLG 426
+KC+FC + SS+ +HVD H D+ K EN LG
Sbjct: 523 FKCDFCSFDTKRPSSLAKHVDKVHRDEA-KTENRAPLG 559
>sp|Q92206|ERG1_CANAL Squalene monooxygenase (Squalene epoxidase) (SE)
Length = 496
Score = 33.9 bits (76), Expect = 0.57
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 163 SDIVHKFLRDRILPAYDKMGLVIPKDCLWNTERDVFGRQYSMIKKYSEENWK 318
+D V+K+LRD ILPA K + K+ L + + QY K EN K
Sbjct: 274 NDAVYKYLRDNILPAIPKETVPAFKEALEERKFRIMPNQYLSAMKQGSENHK 325
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,825,761
Number of Sequences: 369166
Number of extensions: 1865829
Number of successful extensions: 7971
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7887
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)