Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_D17
(520 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75439|MPPB_HUMAN Mitochondrial processing peptidase bet... 155 4e-38
sp|Q9CXT8|MPPB_MOUSE Mitochondrial processing peptidase bet... 155 7e-38
sp|Q03346|MPPB_RAT Mitochondrial processing peptidase beta ... 153 2e-37
sp|Q9Y8B5|MPPB_LENED Mitochondrial processing peptidase bet... 139 3e-33
sp|P31800|UQCR1_BOVIN Ubiquinol-cytochrome-c reductase comp... 138 7e-33
sp|P31930|UQCR1_HUMAN Ubiquinol-cytochrome-c reductase comp... 136 3e-32
sp|Q9CZ13|UQCR1_MOUSE Ubiquinol-cytochrome-c reductase comp... 131 1e-30
sp|Q00302|MPPB_BLAEM Mitochondrial processing peptidase bet... 130 1e-30
sp|Q9P7X1|MPPB_SCHPO Probable mitochondrial processing pept... 130 2e-30
sp|P11913|MPPB_NEUCR Mitochondrial processing peptidase bet... 119 6e-27
>sp|O75439|MPPB_HUMAN Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (P-52)
Length = 489
Score = 155 bits (393), Expect = 4e-38
Identities = 80/175 (45%), Positives = 114/175 (65%), Gaps = 2/175 (1%)
Frame = +2
Query: 2 EVVFDYLHATAFQGSSLGQTILGSENNIRSLNRTDLKTFIDTLYISPKMFLAGVGGIEHE 181
EVVFDYLHATA+Q ++LG+TILG NI+S++R DL +I T Y P++ LA GG+ H+
Sbjct: 191 EVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHD 250
Query: 182 RIVEIANKYFGD-LSGGLGE-RNIPPSHYTGSDFRQRNDRMQQAYMALACRGPGWIHADT 355
++++A +FGD L GE +PP +TGS+ R R+D+M A++A+A GW H DT
Sbjct: 251 ELLDLAKFHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDT 310
Query: 356 LALMIASSVSGAWDRSNPAMGPSTSYLAKSFFPAGNVHSFQNFFTCYHDTSLWGI 520
+ LM+A+++ G WDRS +S LA+ HSFQ+F T Y DT LWG+
Sbjct: 311 ICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGL 365
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (P-52)
Length = 489
Score = 155 bits (391), Expect = 7e-38
Identities = 81/175 (46%), Positives = 112/175 (64%), Gaps = 2/175 (1%)
Frame = +2
Query: 2 EVVFDYLHATAFQGSSLGQTILGSENNIRSLNRTDLKTFIDTLYISPKMFLAGVGGIEHE 181
EVVFDYLHATA+Q ++LG+TILG NI+S+NR DL +I T Y P++ LA GG+ H
Sbjct: 191 EVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVCHN 250
Query: 182 RIVEIANKYFGD-LSGGLGE-RNIPPSHYTGSDFRQRNDRMQQAYMALACRGPGWIHADT 355
++E+A +FGD L G +PP +TGS+ R R+D+M A++A+A GW H DT
Sbjct: 251 ELLELAKFHFGDSLCSHKGAIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDT 310
Query: 356 LALMIASSVSGAWDRSNPAMGPSTSYLAKSFFPAGNVHSFQNFFTCYHDTSLWGI 520
+ LM+A+++ G WDRS +S LA+ HSFQ+F T Y DT LWG+
Sbjct: 311 ICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGL 365
>sp|Q03346|MPPB_RAT Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (P-52)
Length = 489
Score = 153 bits (387), Expect = 2e-37
Identities = 80/175 (45%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Frame = +2
Query: 2 EVVFDYLHATAFQGSSLGQTILGSENNIRSLNRTDLKTFIDTLYISPKMFLAGVGGIEHE 181
EVVFDYLHATA+Q ++LG+TILG NI+S++R DL +I T Y P++ LA GG+ H
Sbjct: 191 EVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVCHN 250
Query: 182 RIVEIANKYFGD-LSGGLGE-RNIPPSHYTGSDFRQRNDRMQQAYMALACRGPGWIHADT 355
++E+A +FGD L G+ +PP +TGS+ R R+D+M A++A+A GW H DT
Sbjct: 251 ELLELAKFHFGDSLCAHKGDVPALPPCKFTGSEIRVRDDKMPLAHLAVAIEAVGWTHPDT 310
Query: 356 LALMIASSVSGAWDRSNPAMGPSTSYLAKSFFPAGNVHSFQNFFTCYHDTSLWGI 520
+ LM+A+++ G WDRS +S LA+ HSFQ+F T Y DT LWG+
Sbjct: 311 IRLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGL 365
>sp|Q9Y8B5|MPPB_LENED Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP)
Length = 466
Score = 139 bits (351), Expect = 3e-33
Identities = 75/181 (41%), Positives = 104/181 (57%), Gaps = 8/181 (4%)
Frame = +2
Query: 2 EVVFDYLHATAFQGSSLGQTILGSENNIRSLNRTDLKTFIDTLYISPKMFLAGVGGIEHE 181
EVVFD+LHA AFQG LG+TILG +NNI S+ R DL ++I T Y + +M L G GG++H+
Sbjct: 163 EVVFDHLHAVAFQGQPLGRTILGPKNNILSIQRDDLASYIQTNYTADRMVLVGTGGVDHQ 222
Query: 182 RIVEIANKYFGDLS--------GGLGERNIPPSHYTGSDFRQRNDRMQQAYMALACRGPG 337
+V++A K+F L G L P + GS+ R R+D + A++A+A G G
Sbjct: 223 SLVKLAEKHFSSLPVSANPLALGRLSSERKPT--FVGSEARIRDDELPTAHVAIAVEGVG 280
Query: 338 WIHADTLALMIASSVSGAWDRSNPAMGPSTSYLAKSFFPAGNVHSFQNFFTCYHDTSLWG 517
W D +M+ S+ G WDRS A +S L+ +SF +F T Y DT LWG
Sbjct: 281 WSSPDYFPMMVMQSIFGNWDRSLGASSLLSSRLSHIISSNSLANSFMSFSTSYSDTGLWG 340
Query: 518 I 520
I
Sbjct: 341 I 341
>sp|P31800|UQCR1_BOVIN Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial precursor
Length = 480
Score = 138 bits (348), Expect = 7e-33
Identities = 71/175 (40%), Positives = 103/175 (58%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 EVVFDYLHATAFQGSSLGQTILGSENNIRSLNRTDLKTFIDTLYISPKMFLAGVGGIEHE 181
+VVF+YLHATAFQG+ L Q++ G N+R L+R DL ++ Y +P+M LA GG+EH
Sbjct: 181 DVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHR 240
Query: 182 RIVEIANKYFGDLSGGLGERNIP---PSHYTGSDFRQRNDRMQQAYMALACRGPGWIHAD 352
+++++A K+F LSG E +P P +TGS R D + A++A+A GPGW H D
Sbjct: 241 QLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPD 300
Query: 353 TLALMIASSVSGAWDRSNPAMGPSTSYLAKSFFPAGNVHSFQNFFTCYHDTSLWG 517
+AL +A+++ G +D + +S LA SFQ F CY DT L G
Sbjct: 301 NVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLG 355
>sp|P31930|UQCR1_HUMAN Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial precursor
Length = 480
Score = 136 bits (342), Expect = 3e-32
Identities = 68/175 (38%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 EVVFDYLHATAFQGSSLGQTILGSENNIRSLNRTDLKTFIDTLYISPKMFLAGVGGIEHE 181
+VVF+YLHATAFQG+ L Q + G N+R L+R DL ++ T Y +P+M LA GG+EH+
Sbjct: 181 DVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMVLAAAGGVEHQ 240
Query: 182 RIVEIANKYFGDLSGGLGERNIP---PSHYTGSDFRQRNDRMQQAYMALACRGPGWIHAD 352
+++++A K+ G + E +P P +TGS+ R R+D + A++A+A GPGW D
Sbjct: 241 QLLDLAQKHLGGIPWTYAEDAVPTLTPCRFTGSEIRHRDDALPFAHVAIAVEGPGWASPD 300
Query: 353 TLALMIASSVSGAWDRSNPAMGPSTSYLAKSFFPAGNVHSFQNFFTCYHDTSLWG 517
++AL +A+++ G +D + +S LA SFQ F CY +T L G
Sbjct: 301 SVALQVANAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICYAETGLLG 355
>sp|Q9CZ13|UQCR1_MOUSE Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial precursor
Length = 480
Score = 131 bits (329), Expect = 1e-30
Identities = 68/174 (39%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
Frame = +2
Query: 5 VVFDYLHATAFQGSSLGQTILGSENNIRSLNRTDLKTFIDTLYISPKMFLAGVGGIEHER 184
VVFDYLHATAFQG+ L Q + G N+R L+RTDL +++ Y +P+M LA GG+EH++
Sbjct: 182 VVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLNRNYKAPRMVLAAAGGVEHQQ 241
Query: 185 IVEIANKYFGDLSGGLGERNIP---PSHYTGSDFRQRNDRMQQAYMALACRGPGWIHADT 355
++++A K+ +S E +P P +TGS+ R R+D + A++A+A GPGW + D
Sbjct: 242 LLDLAQKHLSSVSRVYEEDAVPGLTPCRFTGSEIRHRDDALPLAHVAIAVEGPGWANPDN 301
Query: 356 LALMIASSVSGAWDRSNPAMGPSTSYLAKSFFPAGNVHSFQNFFTCYHDTSLWG 517
+ L +A+++ G +D + +S LA SFQ F Y DT L G
Sbjct: 302 VTLQVANAIIGHYDCTCGGGVHLSSPLASVAVANKLCQSFQTFNISYSDTGLLG 355
>sp|Q00302|MPPB_BLAEM Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (BeMPP1)
Length = 465
Score = 130 bits (328), Expect = 1e-30
Identities = 71/173 (41%), Positives = 103/173 (59%)
Frame = +2
Query: 2 EVVFDYLHATAFQGSSLGQTILGSENNIRSLNRTDLKTFIDTLYISPKMFLAGVGGIEHE 181
EVVFD+LHA AF ++LG TILG + NI++L++ DL+ +I Y + +M + G G ++H
Sbjct: 169 EVVFDHLHAAAFPENALGYTILGPKENIQTLSQADLQAYIKNNYTADRMVVVGAGNVDHA 228
Query: 182 RIVEIANKYFGDLSGGLGERNIPPSHYTGSDFRQRNDRMQQAYMALACRGPGWIHADTLA 361
+ ++A FG L G G+ +TGSD R R D M A++ALA G W AD
Sbjct: 229 ELCKLAETNFGKLPQGSGKAKFVRPAFTGSDVRIRVDDMPTAHIALAVEGASWTSADHWP 288
Query: 362 LMIASSVSGAWDRSNPAMGPSTSYLAKSFFPAGNVHSFQNFFTCYHDTSLWGI 520
L++AS++ G++DR+ PS S LA+ +SF +F T Y DT LWGI
Sbjct: 289 LLVASAMIGSYDRAAGNAHPS-SKLAQIVAKHNLANSFTSFNTTYSDTGLWGI 340
>sp|Q9P7X1|MPPB_SCHPO Probable mitochondrial processing peptidase beta subunit,
mitochondrial precursor (Beta-MPP) (PEP)
Length = 457
Score = 130 bits (327), Expect = 2e-30
Identities = 72/179 (40%), Positives = 99/179 (55%), Gaps = 6/179 (3%)
Frame = +2
Query: 2 EVVFDYLHATAFQGSSLGQTILGSENNIRSLNRTDLKTFIDTLYISPKMFLAGVGGIEHE 181
EVVFD+LHATA+QG LG+TILG + NI SL R DL +I Y S +M ++ G I HE
Sbjct: 156 EVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDRMIISSAGSISHE 215
Query: 182 RIVEIANKYFGDLSGGLGE------RNIPPSHYTGSDFRQRNDRMQQAYMALACRGPGWI 343
+V++A KYFG L + R + P + GS+ R R+D A +A+A G W
Sbjct: 216 ELVKLAEKYFGHLEPSAEQLSLGAPRGLKP-RFVGSEIRARDDDSPTANIAIAVEGMSWK 274
Query: 344 HADTLALMIASSVSGAWDRSNPAMGPSTSYLAKSFFPAGNVHSFQNFFTCYHDTSLWGI 520
H D ++ ++ G WDR+ A +S L+ +SF +F T Y DT LWGI
Sbjct: 275 HPDYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGI 333
>sp|P11913|MPPB_NEUCR Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (Ubiquinol-cytochrome-c reductase
complex core protein I)
Length = 476
Score = 119 bits (297), Expect = 6e-27
Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 7/180 (3%)
Frame = +2
Query: 2 EVVFDYLHATAFQGSSLGQTILGSENNIRSLNRTDLKTFIDTLYISPKMFLAGVGGIEHE 181
EVVFD+LHATA+Q LG+TILG NIR + RT+L +I Y + +M L G GG+ HE
Sbjct: 174 EVVFDHLHATAYQHQPLGRTILGpreNIRDITRTELVNYIKNNYTADRMVLVGAGGVPHE 233
Query: 182 RIVEIANKYFGDL-------SGGLGERNIPPSHYTGSDFRQRNDRMQQAYMALACRGPGW 340
++VE+A+KYF L S + + P + GSD R R+D + A +A+A G W
Sbjct: 234 QLVEMADKYFSKLPATAPVSSASILSKKKP--DFIGSDIRIRDDTIPTANIAIAVEGVSW 291
Query: 341 IHADTLALMIASSVSGAWDRSNPAMGPSTSYLAKSFFPAGNVHSFQNFFTCYHDTSLWGI 520
D ++ ++ G +D++ S L+ SF +F T Y DT LWGI
Sbjct: 292 SDDDYFTGLVTQAIVGNYDKALGNAPHQGSKLSGFVHKHDLATSFMSFSTSYSDTGLWGI 351
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,660,331
Number of Sequences: 369166
Number of extensions: 1543786
Number of successful extensions: 3741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3717
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)