Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_D12
(939 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P45969|YNZ9_CAEEL Hypothetical protein T09A5.9 in chromo... 81 4e-15
sp|P36047|SDS22_YEAST Protein phosphatases PP1 regulatory s... 69 1e-11
sp|P25146|INLA_LISMO Internalin A precursor 56 2e-07
sp|Q723K6|INLA_LISMF Internalin A precursor 55 2e-07
sp|P22194|SDS22_SCHPO Protein phosphatases PP1 regulatory s... 54 5e-07
sp|Q6UXK5|LRRN1_HUMAN Leucine-rich repeats neuronal protein... 52 3e-06
sp|P25147|INLB_LISMO Internalin B precursor 51 4e-06
sp|P32336|NUD1_YEAST Protein NUD1 51 5e-06
sp|P70193|LRIG1_MOUSE Leucine-rich repeats and immunoglobul... 50 7e-06
sp|Q86X45|LRRC6_HUMAN Leucine-rich repeat-containing protei... 50 9e-06
>sp|P45969|YNZ9_CAEEL Hypothetical protein T09A5.9 in chromosome III
Length = 326
Score = 81.3 bits (199), Expect = 4e-15
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 5/240 (2%)
Frame = +3
Query: 129 LECSERDITDIAILNQYINLRLINLSKNLIKDASPLSNITXXXXXXXXXXXXTSAQ-LDP 305
L+ E +T+I+ L +NL ++LS N I+ + L +T + L+
Sbjct: 86 LDLYENQLTEISHLESLVNLVSLDLSYNRIRQINGLDKLTKLETLYLVSNKIEKIENLEA 145
Query: 306 LHYLQILNLSSNRIRSLDGINH-PNLELLNLSTNQISETVGLNGPILDKIVLQNLHTLDL 482
L L++L L NRI+ ++ I H NL+ L + N+I + G+ LQ L L L
Sbjct: 146 LTQLKLLELGDNRIKKIENIGHLVNLDELFIGKNKIRQLEGVE-------TLQKLSVLSL 198
Query: 483 HSNRLTSTAGFD-LPNLKILYLASNAITKIEGLENLVSLTTLHLRDNKIEKLDGFXXXXX 659
NR+ + L NLK LYL+ + I G+E L +L L + +N+I+ G
Sbjct: 199 PGNRIVKIENVEQLNNLKELYLSDQGLQDIHGVEPLTNLLLLDVANNEIKTFSG-VERLE 257
Query: 660 XXXXXXXXXXXIAKARETRKLQCIPNLKTLILSENP--ANEEEDYRMEVLAYLRRLVKLD 833
+ E +L + L+T+ L NP N+ YR +V+ L ++ ++D
Sbjct: 258 SLNDFWANDNKVESFSEIEQLSKLKGLQTVYLERNPFYFNDTNQYRRKVMMTLTQVTQID 317
Score = 55.5 bits (132), Expect = 2e-07
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +3
Query: 378 LELLNLSTNQISETVGLNGPILDKIVLQNLHTLDLHSNRLTSTAGFD-LPNLKILYLASN 554
L L+L NQ++E L L NL +LDL NR+ G D L L+ LYL SN
Sbjct: 83 LTSLDLYENQLTEISHLES-------LVNLVSLDLSYNRIRQINGLDKLTKLETLYLVSN 135
Query: 555 AITKIEGLENLVSLTTLHLRDNKIEKLD 638
I KIE LE L L L L DN+I+K++
Sbjct: 136 KIEKIENLEALTQLKLLELGDNRIKKIE 163
Score = 55.1 bits (131), Expect = 3e-07
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%)
Frame = +3
Query: 168 LNQYINLRLINLSKNLIKDASPL--SNITXXXXXXXXXXXXTSAQLDPLHYLQILNLSSN 341
L + + + + NL+ SP S +T + L+ L L L+LS N
Sbjct: 54 LTGFPKIEELRMRNNLLVSISPTISSLVTLTSLDLYENQLTEISHLESLVNLVSLDLSYN 113
Query: 342 RIRSLDGINH-PNLELLNLSTNQISETVGLNGPILDKIVLQNLHTLDLHSNRLTSTAGFD 518
RIR ++G++ LE L L +N+I + L L L L+L NR+
Sbjct: 114 RIRQINGLDKLTKLETLYLVSNKIEKIENLEA-------LTQLKLLELGDNRIKKIENIG 166
Query: 519 -LPNLKILYLASNAITKIEGLENLVSLTTLHLRDNKIEKLD 638
L NL L++ N I ++EG+E L L+ L L N+I K++
Sbjct: 167 HLVNLDELFIGKNKIRQLEGVETLQKLSVLSLPGNRIVKIE 207
Score = 51.6 bits (122), Expect = 3e-06
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Frame = +3
Query: 288 SAQLDPLHYLQILNLSSNRIRSLDGINH-PNLELLNLSTNQISETVGLNGPILDKIVLQN 464
S + L L L+L N++ + + NL L+LS N+I + +NG LDK L
Sbjct: 74 SPTISSLVTLTSLDLYENQLTEISHLESLVNLVSLDLSYNRIRQ---ING--LDK--LTK 126
Query: 465 LHTLDLHSNRLTSTAGFD-LPNLKILYLASNAITKIEGLENLVSLTTLHLRDNKIEKLDG 641
L TL L SN++ + L LK+L L N I KIE + +LV+L L + NKI +L+G
Sbjct: 127 LETLYLVSNKIEKIENLEALTQLKLLELGDNRIKKIENIGHLVNLDELFIGKNKIRQLEG 186
>sp|P36047|SDS22_YEAST Protein phosphatases PP1 regulatory subunit SDS22
Length = 338
Score = 69.3 bits (168), Expect = 1e-11
Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 6/193 (3%)
Frame = +3
Query: 78 ISMISQIGAGLNYAFIKLECSERDITDIAI-LNQYINLRLINLSKNLIKDASPLSNITXX 254
I IS++ + + L+ + I I+ +N+ L ++LS N IK L N+T
Sbjct: 78 IESISEVEVLPHDKIVDLDFYDNKIKHISSNVNKLTKLTSLDLSFNKIKHIKNLENLTDL 137
Query: 255 XXXXXXXXXXTSAQ-LDPLHYLQILNLSSNRIRSLDGINHP---NLELLNLSTNQISETV 422
+ + L L L+ L L N++ S++ + NLE + L N I +
Sbjct: 138 ENLYFVQNSISKIENLSTLKSLKNLELGGNKVHSIEPDSFEGLSNLEEIWLGKNSIPRLI 197
Query: 423 GLNGPILDKIVLQNLHTLDLHSNRLTSTAGFD-LPNLKILYLASNAITKIEGLENLVSLT 599
L+ L+NL L + SN+L + L NL+ LYL+ N ITKIEGLE + LT
Sbjct: 198 NLHP-------LKNLKILSIQSNKLKKIENLEELTNLEELYLSHNFITKIEGLEKNLKLT 250
Query: 600 TLHLRDNKIEKLD 638
TL + NKI L+
Sbjct: 251 TLDVTSNKITSLE 263
Score = 35.0 bits (79), Expect = 0.31
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Frame = +3
Query: 72 ESISMISQIGAGLNYAFIKLECSERDITDIAILNQYINLRLINLSKNLIKDASPLSNITX 251
E +S + +I G N I + L+ NL+++++ N +K L +T
Sbjct: 178 EGLSNLEEIWLGKN-----------SIPRLINLHPLKNLKILSIQSNKLKKIENLEELTN 226
Query: 252 XXXXXXXXXXXTSAQ-LDPLHYLQILNLSSNRIRSLDGINH-PNLELLNLSTNQISETVG 425
T + L+ L L+++SN+I SL+ +NH NL + S N+I ++
Sbjct: 227 LEELYLSHNFITKIEGLEKNLKLTTLDVTSNKITSLENLNHLSNLTDIWASFNKIDQSFE 286
Query: 426 LNGPILDKIVLQNLHTLDLHSN 491
G L L L T+ L N
Sbjct: 287 SLGENLS--ALSRLETIYLEGN 306
>sp|P25146|INLA_LISMO Internalin A precursor
Length = 800
Score = 55.8 bits (133), Expect = 2e-07
Identities = 68/258 (26%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Frame = +3
Query: 33 EETKTPLSKEIIAESISM--ISQIGA------------GLNYA--FIKLECSERDITDIA 164
E+ KT L K + +++S + Q+ G+ Y ++ S +TDI
Sbjct: 55 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 114
Query: 165 ILNQYINLRLINLSKNLIKDASPLSNITXXXXXXXXXXXXTSAQLDPLHYLQILN---LS 335
L L I ++ N I D +PL+N+T T +DPL L LN LS
Sbjct: 115 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT--DIDPLKNLTNLNRLELS 172
Query: 336 SNRIRSLDGI----------------------NHPNLELLNLSTNQISE----------- 416
SN I + + N LE L++S+N++S+
Sbjct: 173 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 232
Query: 417 -TVGLNGPILDKI---VLQNLHTLDLHSNRLTSTAGF-DLPNLKILYLASNAITKIEGLE 581
+ N I D +L NL L L+ N+L L NL L LA+N I+ + L
Sbjct: 233 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 292
Query: 582 NLVSLTTLHLRDNKIEKL 635
L LT L L N+I +
Sbjct: 293 GLTKLTELKLGANQISNI 310
Score = 30.8 bits (68), Expect = 5.8
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +3
Query: 126 KLECSERDITDIAILNQYINLRLINLSKNLIKDASPLSNITXXXXXXXXXXXXTS-AQLD 302
+L+ I++I+ L L + L++N ++D SP+SN+ + + +
Sbjct: 299 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 358
Query: 303 PLHYLQILNLSSNRIRSLDGI-NHPNLELLNLSTNQISETVGL 428
L LQ L +N++ + + N N+ L+ NQIS+ L
Sbjct: 359 SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 401
>sp|Q723K6|INLA_LISMF Internalin A precursor
Length = 800
Score = 55.5 bits (132), Expect = 2e-07
Identities = 68/258 (26%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Frame = +3
Query: 33 EETKTPLSKEIIAESISM--ISQIGA------------GLNYA--FIKLECSERDITDIA 164
E+ KT L K + +++S + Q+ GL Y ++ S +TDI
Sbjct: 55 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDIT 114
Query: 165 ILNQYINLRLINLSKNLIKDASPLSNITXXXXXXXXXXXXTSAQLDPLHYLQILN---LS 335
L L I ++ N I D +PL+N++ T +DPL L LN LS
Sbjct: 115 PLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQIT--DIDPLKNLTNLNRLELS 172
Query: 336 SNRIRSLDGI----------------------NHPNLELLNLSTNQISE----------- 416
SN I + + N LE L++S+N++S+
Sbjct: 173 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 232
Query: 417 -TVGLNGPILDKI---VLQNLHTLDLHSNRLTSTAGF-DLPNLKILYLASNAITKIEGLE 581
+ N I D +L NL L L+ N+L L NL L LA+N I+ + L
Sbjct: 233 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 292
Query: 582 NLVSLTTLHLRDNKIEKL 635
L LT L L N+I +
Sbjct: 293 GLTKLTELKLGANQISNI 310
Score = 30.8 bits (68), Expect = 5.8
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +3
Query: 126 KLECSERDITDIAILNQYINLRLINLSKNLIKDASPLSNITXXXXXXXXXXXXTS-AQLD 302
+L+ I++I+ L L + L++N ++D SP+SN+ + + +
Sbjct: 299 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 358
Query: 303 PLHYLQILNLSSNRIRSLDGI-NHPNLELLNLSTNQISETVGL 428
L LQ L +N++ + + N N+ L+ NQIS+ L
Sbjct: 359 SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 401
>sp|P22194|SDS22_SCHPO Protein phosphatases PP1 regulatory subunit sds22
Length = 332
Score = 54.3 bits (129), Expect = 5e-07
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 2/159 (1%)
Frame = +3
Query: 168 LNQYINLRLINLSKNLIKDASPLSNITXXXXXXXXXXXXTSAQLDPLHYLQILNLSSNRI 347
L ++ NL+ + L +N IK + T LD + L L+LS N I
Sbjct: 58 LERFKNLQSLCLRQNQIKKIESVPE-TLTELDLYDNLIVRIENLDNVKNLTYLDLSFNNI 116
Query: 348 RSLDGINH-PNLELLNLSTNQISETVGLNGPILDKIVLQNLHTLDLHSNRLTSTAGFD-L 521
+++ INH LE L N+I L G L L L+L N++ D L
Sbjct: 117 KTIRNINHLKGLENLFFVQNRIRRIENLEG-------LDRLTNLELGGNKIRVIENLDTL 169
Query: 522 PNLKILYLASNAITKIEGLENLVSLTTLHLRDNKIEKLD 638
NL+ L++ N ITK E E L L+ L ++ N+I + +
Sbjct: 170 VNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFE 208
Score = 47.4 bits (111), Expect = 6e-05
Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 6/245 (2%)
Frame = +3
Query: 126 KLECSERDITDIAILNQYINLRLINLSKNLIKDASPLSNITXXXXXXXXXXXXTSAQ-LD 302
+L+ + I I L+ NL ++LS N IK ++++ + L+
Sbjct: 86 ELDLYDNLIVRIENLDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLE 145
Query: 303 PLHYLQILNLSSNRIRSLDGINH-PNLELLNLSTNQISETVGLNGPILDKIVLQNLHTLD 479
L L L L N+IR ++ ++ NLE L + N+I++ LQ L L
Sbjct: 146 GLDRLTNLELGGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEK-------LQKLSLLS 198
Query: 480 LHSNRLTSTAGFDLPN--LKILYLASNAITKIEGLENLVSLTTLHLRDNKIEKLDGFXXX 653
+ SNR+T + L+ LY++ N +T G+E L +L L + +N I+ L
Sbjct: 199 IQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGL 258
Query: 654 XXXXXXXXXXXXXIAKARETRKLQCIPNLKTLILSENPANEEED--YRMEVLAYLRRLVK 827
+ +L + L+T+ NP + YR +V L +L +
Sbjct: 259 KNLVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQKTNPAVYRNKVRLCLPQLRQ 318
Query: 828 LDKDI 842
+D I
Sbjct: 319 IDATI 323
>sp|Q6UXK5|LRRN1_HUMAN Leucine-rich repeats neuronal protein 1 precursor (NLRR-1)
Length = 716
Score = 51.6 bits (122), Expect = 3e-06
Identities = 51/175 (29%), Positives = 75/175 (42%), Gaps = 6/175 (3%)
Frame = +3
Query: 318 QILNLSSNRI-RSLDGINHPNLELLNLSTNQISETVGLNGPILDKIVLQNLHTLDLHSNR 494
Q+L L SN I +++D + +L NL+ S+ N + L L TL L N+
Sbjct: 75 QVLLLQSNNIAKTVDELQ----QLFNLTELDFSQNNFTNIKEVGLANLTQLTTLHLEENQ 130
Query: 495 LTSTAGF---DLPNLKILYLASNAITKIEG--LENLVSLTTLHLRDNKIEKLDGFXXXXX 659
+T + DL NL+ LY+ N I+ I L +L LHL NK++ +D
Sbjct: 131 ITEMTDYCLQDLSNLQELYINHNQISTISAHAFAGLKNLLRLHLNSNKLKVID------- 183
Query: 660 XXXXXXXXXXXIAKARETRKLQCIPNLKTLILSENPANEEEDYRMEVLAYLRRLV 824
+R PNL+ L++ ENP D + LA LR LV
Sbjct: 184 -----------------SRWFDSTPNLEILMIGENPVIGILDMNFKPLANLRSLV 221
Score = 40.0 bits (92), Expect = 0.009
Identities = 62/269 (23%), Positives = 110/269 (40%), Gaps = 12/269 (4%)
Frame = +3
Query: 51 LSKEIIAESISMISQIGAGLNYAFIKLECSERDITDIAI--LNQYINLRLINLSKNLIKD 224
L IA+++ + Q+ + +L+ S+ + T+I L L ++L +N I +
Sbjct: 79 LQSNNIAKTVDELQQL-----FNLTELDFSQNNFTNIKEVGLANLTQLTTLHLEENQITE 133
Query: 225 ASP-----LSNITXXXXXXXXXXXXTSAQLDPLHYLQILNLSSNRIRSLDGI---NHPNL 380
+ LSN+ ++ L L L+L+SN+++ +D + PNL
Sbjct: 134 MTDYCLQDLSNLQELYINHNQISTISAHAFAGLKNLLRLHLNSNKLKVIDSRWFDSTPNL 193
Query: 381 ELLNLSTNQISETVGLNGPILDKIVLQNLHTLDLHSNRLTSTAGFDLPNLKILYLASNAI 560
E+L + N + +G+ LD++ L NL+ L LA +
Sbjct: 194 EILMIGENPV---IGI---------------LDMNFKPLA--------NLRSLVLAGMYL 227
Query: 561 TKIEG--LENLVSLTTLHLRDNKIEKLDGFXXXXXXXXXXXXXXXXIAKARETRKLQCIP 734
T I G L L SL +L DNK+ K+ LQ +P
Sbjct: 228 TDIPGNALVGLDSLESLSFYDNKLVKVPQLA------------------------LQKVP 263
Query: 735 NLKTLILSENPANEEEDYRMEVLAYLRRL 821
NLK L L++NP ++ ++ + + L+ L
Sbjct: 264 NLKFLDLNKNPIHKIQEGDFKNMLRLKEL 292
>sp|P25147|INLB_LISMO Internalin B precursor
Length = 630
Score = 51.2 bits (121), Expect = 4e-06
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 4/204 (1%)
Frame = +3
Query: 12 KEEAMHEEETKTPLSK--EIIAESISMISQIGAGLNYAFIKLECSERDITDIAILNQYIN 185
K++++ + T+ L+ +IIA + + S G KL + +TDI L N
Sbjct: 62 KKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKN 121
Query: 186 LRLINLSKNLIKDASPLSNITXXXXXXXXXXXXTSAQLDPLHYLQILNLSSNRIRSLDGI 365
L + L +N +KD S L + L L+ L+L N I ++G+
Sbjct: 122 LGWLFLDENKVKDLSSLKD---------------------LKKLKSLSLEHNGISDINGL 160
Query: 366 NH-PNLELLNLSTNQISETVGLNGPILDKIVLQNLHTLDLHSNRLTSTAGF-DLPNLKIL 539
H P LE L L N+I++ L+ L L TL L N+++ L L+ L
Sbjct: 161 VHLPQLESLYLGNNKITDITVLSR-------LTKLDTLSLEDNQISDIVPLAGLTKLQNL 213
Query: 540 YLASNAITKIEGLENLVSLTTLHL 611
YL+ N I+ + L L +L L L
Sbjct: 214 YLSKNHISDLRALAGLKNLDVLEL 237
Score = 47.0 bits (110), Expect = 8e-05
Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 3/149 (2%)
Frame = +3
Query: 198 NLSKNLIKDASPLSNITXXXXXXXXXXXXTSAQ-LDPLHYLQILNLSSNRIRSLDGI-NH 371
NL K + DA + + S Q + L + L L+ N++ + + N
Sbjct: 60 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANL 119
Query: 372 PNLELLNLSTNQISETVGLNGPILDKIVLQNLHTLDLHSNRLTSTAGF-DLPNLKILYLA 548
NL L L N++ + L L+ L +L L N ++ G LP L+ LYL
Sbjct: 120 KNLGWLFLDENKVKDLSSLKD-------LKKLKSLSLEHNGISDINGLVHLPQLESLYLG 172
Query: 549 SNAITKIEGLENLVSLTTLHLRDNKIEKL 635
+N IT I L L L TL L DN+I +
Sbjct: 173 NNKITDITVLSRLTKLDTLSLEDNQISDI 201
Score = 31.2 bits (69), Expect = 4.4
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +3
Query: 150 ITDIAILNQYINLRLINLSKNLIKDASPLSNITXXXXXXXXXXXXTSAQLDPLHYLQILN 329
ITDI +L++ L ++L N I D PL+ +T LQ L
Sbjct: 176 ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK---------------------LQNLY 214
Query: 330 LSSNRI---RSLDGINHPNLELLNLSTNQISETVGLNGPI 440
LS N I R+L G+ NL++L L + + LN PI
Sbjct: 215 LSKNHISDLRALAGLK--NLDVLELFSQEC-----LNKPI 247
>sp|P32336|NUD1_YEAST Protein NUD1
Length = 851
Score = 50.8 bits (120), Expect = 5e-06
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
Frame = +3
Query: 105 GLNYAFIKLECSERDITDI-AILNQYINLRLINLSKNLIKDASPLSNITXXXXXXXXXXX 281
G+ ++L CS IT L + +L ++LS NL+ + ++
Sbjct: 517 GIPSNVVQLFCSNNKITSAHCSLAGFHDLECLDLSYNLLNTSLKFLSLC----------- 565
Query: 282 XTSAQLDPLHYLQILNLSSNRIRSLDGINHPNLELLNLSTNQISETVGLNGPIL--DKIV 455
H+LQ +NLS N I+SL+GI ++ LNLS N+I+ + IL + +V
Sbjct: 566 ---------HHLQEVNLSYNSIQSLEGIGSSRMKKLNLSNNEINGIIDFEQLILTNNSVV 616
Query: 456 --LQNLHTLDLHSNRLTSTAGFD-LPNLKILYLASNAITKI 569
+ LDL +N + + LP LK+L L N + I
Sbjct: 617 GGWLTVEVLDLSNNNIIGVRNINCLPRLKVLNLNGNPLVSI 657
Score = 37.0 bits (84), Expect = 0.080
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 25/173 (14%)
Frame = +3
Query: 324 LNLSSNRIRSLDGINH--PNLELLNLSTNQISETVGLNGPILDKIVLQN----------- 464
++LS +++++ G+ PN+ +LNLS N+++ G+ ++ N
Sbjct: 482 VDLSRGKLKNMFGMQRLLPNVLVLNLSDNEMNTLEGIPSNVVQLFCSNNKITSAHCSLAG 541
Query: 465 ---LHTLDLHSNRLTSTAGFD--LPNLKILYLASNAITKIEGLENLVSLTTLHLRDNKIE 629
L LDL N L ++ F +L+ + L+ N+I +EG+ + + L+L +N+I
Sbjct: 542 FHDLECLDLSYNLLNTSLKFLSLCHHLQEVNLSYNSIQSLEGIGSS-RMKKLNLSNNEIN 600
Query: 630 KLDGFXXXXXXXXXXXXXXXXIA-------KARETRKLQCIPNLKTLILSENP 767
+ F + R + C+P LK L L+ NP
Sbjct: 601 GIIDFEQLILTNNSVVGGWLTVEVLDLSNNNIIGVRNINCLPRLKVLNLNGNP 653
>sp|P70193|LRIG1_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 1
precursor (LIG-1)
Length = 1091
Score = 50.4 bits (119), Expect = 7e-06
Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Frame = +3
Query: 291 AQLDPLHYLQILNLSSNRIRSLDGINHPN---LELLNLSTNQIS--ETVGLNGPILDKIV 455
+QL L++L+LSSN I + PN + LNL++N+IS E+ +G +
Sbjct: 135 SQLKSYLSLEVLDLSSNNITEIRSSCFPNGLRIRELNLASNRISILESGAFDG------L 188
Query: 456 LQNLHTLDLHSNRLTS--TAGFDLPNLKILYLASNAITKIEGL--ENLVSLTTLHLRDNK 623
++L TL L NR+T F LP L L L N I IEGL + L SL L L+ N
Sbjct: 189 SRSLLTLRLSKNRITQLPVKAFKLPRLTQLDLNRNRIRLIEGLTFQGLDSLEVLRLQRNN 248
Query: 624 IEKL 635
I +L
Sbjct: 249 ISRL 252
>sp|Q86X45|LRRC6_HUMAN Leucine-rich repeat-containing protein 6 (Leucine-rich
testis-specific protein) (Testis-specific leucine-rich
repeat protein)
Length = 466
Score = 50.1 bits (118), Expect = 9e-06
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Frame = +3
Query: 453 VLQNLHTLDLHSNRLTSTAGFD--LPNLKILYLASNAITKIEGLENLVSLTTLHLRDNKI 626
V+ +L L LH + D +LKILYL +N I KIE + L L L+L N I
Sbjct: 19 VIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKIENVSKLKKLEYLNLALNNI 78
Query: 627 EKLDGFXXXXXXXXXXXXXXXXIAKARETRKLQCIPNLKTLILSENPANEEEDYRMEVLA 806
EK++ I + + LQ +LK L L NP + YR V+A
Sbjct: 79 EKIENL-EGCEELAKLDLTVNFIGELSSIKNLQHNIHLKELFLMGNPCASFDHYREFVVA 137
Query: 807 YLRRLVKLD-KDI--YXXXXXXXXXXVLQQKIIEEEKN 911
L +L LD K+I V++ +I E+EK+
Sbjct: 138 TLPQLKWLDGKEIEPSERIKALQDYSVIEPQIREQEKD 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,955,654
Number of Sequences: 369166
Number of extensions: 1711635
Number of successful extensions: 4153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4079
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)