Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_D11
(797 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51650|SSDH_RAT Succinate semialdehyde dehydrogenase (NA... 253 6e-67
sp|Q8BWF0|SSDH_MOUSE Succinate semialdehyde dehydrogenase, ... 248 1e-65
sp|P51649|SSDH_HUMAN Succinate semialdehyde dehydrogenase, ... 248 2e-65
sp|Q3MSM3|SSDH_HYLLA Succinate semialdehyde dehydrogenase, ... 248 2e-65
sp|Q3MSM4|SSDH_PANPA Succinate semialdehyde dehydrogenase, ... 248 2e-65
sp|Q6A2H1|SSDH_GORGO Succinate semialdehyde dehydrogenase, ... 248 2e-65
sp|Q6A2H2|SSDH_PONPY Succinate semialdehyde dehydrogenase, ... 246 4e-65
sp|Q6A2H0|SSDH_PANTR Succinate semialdehyde dehydrogenase, ... 246 7e-65
sp|P55653|GABD_RHISN Probable succinate-semialdehyde dehydr... 233 3e-61
sp|P25526|GABD_ECOLI Succinate-semialdehyde dehydrogenase [... 224 2e-58
>sp|P51650|SSDH_RAT Succinate semialdehyde dehydrogenase (NAD(+)-dependent succinic
semialdehyde dehydrogenase)
Length = 488
Score = 253 bits (645), Expect = 6e-67
Identities = 126/266 (47%), Positives = 173/266 (65%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MILQQPIGVVGVITPWNFPIAMVTRKLGAILAAGCTAIIKPAEDTPLSLLKFIE-CSQKY 177
++L+QP+GV +ITPWNFP AM+TRK+GA LAAGCT ++KPAEDTP S L + +Q
Sbjct: 142 LVLKQPVGVASIITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPYSALALAQLANQAG 201
Query: 178 IPPGVINVVTASKANSPKVGRVFCTDTRIKSLTFTGSSEVGKILYAQSADTMKRLSLELG 357
IPPGV NV+ S+ + +VG V CTD + ++FTGS+ GKIL +A+++KR+S+ELG
Sbjct: 202 IPPGVYNVIPCSRTKAKEVGEVLCTDPLVSKISFTGSTATGKILLHHAANSVKRVSMELG 261
Query: 358 GNAPFLIFQSXXXXXXXXXXXXCKFRNSGQACISANRMIVHESVHDEFVKKLIHEMTK-L 534
G APF++F S KFRN+GQ C+ +NR +V +HD FV K M K L
Sbjct: 262 GLAPFIVFDSANVDQAVAGAMASKFRNAGQTCVCSNRFLVQRGIHDSFVTKFAEAMKKSL 321
Query: 535 KLGYGLEKGVNQGPLINQDAVRKVEQLINRSVDLGAKVQIGGKRAVLEQYSKGNFFQPTV 714
++G G E+G QGPLIN+ AV KVE+ +N +V GA V GGKR S GNFF+PT+
Sbjct: 322 RVGNGFEEGTTQGPLINEKAVEKVEKHVNDAVAKGATVVTGGKR----HQSGGNFFEPTL 377
Query: 715 MTECSIEHPICKNEIFGPVCAITKFE 792
++ + + E FGPV + KF+
Sbjct: 378 LSNVTRDMLCITEETFGPVAPVIKFD 403
>sp|Q8BWF0|SSDH_MOUSE Succinate semialdehyde dehydrogenase, mitochondrial precursor
(NAD(+)-dependent succinic semialdehyde dehydrogenase)
Length = 523
Score = 248 bits (633), Expect = 1e-65
Identities = 124/266 (46%), Positives = 172/266 (64%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MILQQPIGVVGVITPWNFPIAMVTRKLGAILAAGCTAIIKPAEDTPLSLLKFIE-CSQKY 177
++L+QP+GV +ITPWNFP AM+TRK+GA LAAGCT ++KPAEDTP S L + +Q
Sbjct: 177 LVLKQPVGVAAIITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPYSALALAQLANQAG 236
Query: 178 IPPGVINVVTASKANSPKVGRVFCTDTRIKSLTFTGSSEVGKILYAQSADTMKRLSLELG 357
IP GV NV+ S+ + +VG V CTD + ++FTGS+ GKIL +A+++KR+S+ELG
Sbjct: 237 IPAGVYNVIPCSRNKAKEVGEVLCTDPLVSKISFTGSTATGKILLHHAANSVKRVSMELG 296
Query: 358 GNAPFLIFQSXXXXXXXXXXXXCKFRNSGQACISANRMIVHESVHDEFVKKLIHEMTK-L 534
G APF++F S KFRN+GQ C+ +NR +V +HD FV K M K L
Sbjct: 297 GLAPFIVFDSANVDQAVAGAMASKFRNAGQTCVCSNRFLVQRGIHDSFVTKFAEAMKKSL 356
Query: 535 KLGYGLEKGVNQGPLINQDAVRKVEQLINRSVDLGAKVQIGGKRAVLEQYSKGNFFQPTV 714
++G G E+G QGPLIN+ AV KVE+ +N +V GA V GGKR S GNFF+PT+
Sbjct: 357 RVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVAKGATVVTGGKR----HQSGGNFFEPTL 412
Query: 715 MTECSIEHPICKNEIFGPVCAITKFE 792
++ + + E FGP+ + KF+
Sbjct: 413 LSNVTRDMLCITEETFGPLAPVIKFD 438
>sp|P51649|SSDH_HUMAN Succinate semialdehyde dehydrogenase, mitochondrial precursor
(NAD(+)-dependent succinic semialdehyde dehydrogenase)
Length = 535
Score = 248 bits (632), Expect = 2e-65
Identities = 126/266 (47%), Positives = 171/266 (64%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MILQQPIGVVGVITPWNFPIAMVTRKLGAILAAGCTAIIKPAEDTPLSLLKFIE-CSQKY 177
++L+QPIGV VITPWNFP AM+TRK+GA LAAGCT ++KPAEDTP S L E SQ
Sbjct: 189 LVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAG 248
Query: 178 IPPGVINVVTASKANSPKVGRVFCTDTRIKSLTFTGSSEVGKILYAQSADTMKRLSLELG 357
IP GV NV+ S+ N+ +VG CTD + ++FTGS+ GKIL +A+++KR+S+ELG
Sbjct: 249 IPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSMELG 308
Query: 358 GNAPFLIFQSXXXXXXXXXXXXCKFRNSGQACISANRMIVHESVHDEFVKKLIHEMTK-L 534
G APF++F S KFRN+GQ C+ +N+ +V +HD FVK M K L
Sbjct: 309 GLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNL 368
Query: 535 KLGYGLEKGVNQGPLINQDAVRKVEQLINRSVDLGAKVQIGGKRAVLEQYSKGNFFQPTV 714
++G G E+G QGPLIN+ AV KVE+ +N +V GA V GGKR L + NFF+PT+
Sbjct: 369 RVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGK----NFFEPTL 424
Query: 715 MTECSIEHPICKNEIFGPVCAITKFE 792
+ + + E FGP+ + KF+
Sbjct: 425 LCNVTQDMLCTHEETFGPLAPVIKFD 450
>sp|Q3MSM3|SSDH_HYLLA Succinate semialdehyde dehydrogenase, mitochondrial precursor
(NAD(+)-dependent succinic semialdehyde dehydrogenase)
Length = 535
Score = 248 bits (632), Expect = 2e-65
Identities = 126/266 (47%), Positives = 170/266 (63%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MILQQPIGVVGVITPWNFPIAMVTRKLGAILAAGCTAIIKPAEDTPLSLLKFIE-CSQKY 177
++L+QPIGV VITPWNFP AM+TRK+GA LAAGCT ++KPAEDTP S L E SQ
Sbjct: 189 LVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAG 248
Query: 178 IPPGVINVVTASKANSPKVGRVFCTDTRIKSLTFTGSSEVGKILYAQSADTMKRLSLELG 357
IP GV NV+ S+ N+ +VG CTD + ++FTGS+ GKIL +A+++KR+S+ELG
Sbjct: 249 IPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSMELG 308
Query: 358 GNAPFLIFQSXXXXXXXXXXXXCKFRNSGQACISANRMIVHESVHDEFVKKLIHEMTK-L 534
G APF++F S KFRN+GQ C+ +NR +V +HD FVK M K L
Sbjct: 309 GLAPFIVFDSANVDQAVAGALASKFRNTGQTCVCSNRFLVQRGIHDAFVKAFAEAMKKNL 368
Query: 535 KLGYGLEKGVNQGPLINQDAVRKVEQLINRSVDLGAKVQIGGKRAVLEQYSKGNFFQPTV 714
+G G E+G QGPLIN+ AV KVE+ +N +V GA + GGKR L + NFF+PT+
Sbjct: 369 HVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATIVTGGKRHQLGK----NFFEPTL 424
Query: 715 MTECSIEHPICKNEIFGPVCAITKFE 792
+ + + E FGP+ + KF+
Sbjct: 425 LCNVTQDMLCTHEETFGPLAPVIKFD 450
>sp|Q3MSM4|SSDH_PANPA Succinate semialdehyde dehydrogenase, mitochondrial precursor
(NAD(+)-dependent succinic semialdehyde dehydrogenase)
Length = 535
Score = 248 bits (632), Expect = 2e-65
Identities = 126/266 (47%), Positives = 171/266 (64%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MILQQPIGVVGVITPWNFPIAMVTRKLGAILAAGCTAIIKPAEDTPLSLLKFIE-CSQKY 177
++L+QPIGV VITPWNFP AM+TRK+GA LAAGCT ++KPAEDTP S L E SQ
Sbjct: 189 LVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAG 248
Query: 178 IPPGVINVVTASKANSPKVGRVFCTDTRIKSLTFTGSSEVGKILYAQSADTMKRLSLELG 357
IP GV NV+ S+ N+ +VG CTD + ++FTGS+ GKIL +A+++KR+S+ELG
Sbjct: 249 IPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSMELG 308
Query: 358 GNAPFLIFQSXXXXXXXXXXXXCKFRNSGQACISANRMIVHESVHDEFVKKLIHEMTK-L 534
G APF++F S KFRN+GQ C+ +N+ +V +HD FVK M K L
Sbjct: 309 GLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNL 368
Query: 535 KLGYGLEKGVNQGPLINQDAVRKVEQLINRSVDLGAKVQIGGKRAVLEQYSKGNFFQPTV 714
++G G E+G QGPLIN+ AV KVE+ +N +V GA V GGKR L + NFF+PT+
Sbjct: 369 RVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGK----NFFEPTL 424
Query: 715 MTECSIEHPICKNEIFGPVCAITKFE 792
+ + + E FGP+ + KF+
Sbjct: 425 LCNVTQDMLCTHEETFGPLAPVIKFD 450
>sp|Q6A2H1|SSDH_GORGO Succinate semialdehyde dehydrogenase, mitochondrial precursor
(NAD(+)-dependent succinic semialdehyde dehydrogenase)
Length = 535
Score = 248 bits (632), Expect = 2e-65
Identities = 126/266 (47%), Positives = 171/266 (64%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MILQQPIGVVGVITPWNFPIAMVTRKLGAILAAGCTAIIKPAEDTPLSLLKFIE-CSQKY 177
++L+QPIGV VITPWNFP AM+TRK+GA LAAGCT ++KPAEDTP S L E SQ
Sbjct: 189 LVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAG 248
Query: 178 IPPGVINVVTASKANSPKVGRVFCTDTRIKSLTFTGSSEVGKILYAQSADTMKRLSLELG 357
IP GV NV+ S+ N+ +VG CTD + ++FTGS+ GKIL +A+++KR+S+ELG
Sbjct: 249 IPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSMELG 308
Query: 358 GNAPFLIFQSXXXXXXXXXXXXCKFRNSGQACISANRMIVHESVHDEFVKKLIHEMTK-L 534
G APF++F S KFRN+GQ C+ +N+ +V +HD FVK M K L
Sbjct: 309 GLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNL 368
Query: 535 KLGYGLEKGVNQGPLINQDAVRKVEQLINRSVDLGAKVQIGGKRAVLEQYSKGNFFQPTV 714
++G G E+G QGPLIN+ AV KVE+ +N +V GA V GGKR L + NFF+PT+
Sbjct: 369 RVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGK----NFFEPTL 424
Query: 715 MTECSIEHPICKNEIFGPVCAITKFE 792
+ + + E FGP+ + KF+
Sbjct: 425 LCNVTQDMLCTHEETFGPLAPVIKFD 450
>sp|Q6A2H2|SSDH_PONPY Succinate semialdehyde dehydrogenase, mitochondrial precursor
(NAD(+)-dependent succinic semialdehyde dehydrogenase)
Length = 535
Score = 246 bits (629), Expect = 4e-65
Identities = 125/265 (47%), Positives = 170/265 (64%), Gaps = 2/265 (0%)
Frame = +1
Query: 1 MILQQPIGVVGVITPWNFPIAMVTRKLGAILAAGCTAIIKPAEDTPLSLLKFIE-CSQKY 177
++L+QPIGV VITPWNFP AM+TRK+GA LAAGCT ++KPAEDTP S L E SQ
Sbjct: 189 LVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAG 248
Query: 178 IPPGVINVVTASKANSPKVGRVFCTDTRIKSLTFTGSSEVGKILYAQSADTMKRLSLELG 357
IP GV NV+ S+ N+ +VG CTD + ++FTGS+ GKIL +A+++KR+S+ELG
Sbjct: 249 IPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSMELG 308
Query: 358 GNAPFLIFQSXXXXXXXXXXXXCKFRNSGQACISANRMIVHESVHDEFVKKLIHEMTK-L 534
G APF++F S KFRN+GQ C+ +N+ +V +HD FVK M K L
Sbjct: 309 GLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNL 368
Query: 535 KLGYGLEKGVNQGPLINQDAVRKVEQLINRSVDLGAKVQIGGKRAVLEQYSKGNFFQPTV 714
++G G E+G QGPLIN+ AV KVE+ +N +V GA + GGKR L + NFF+PT+
Sbjct: 369 RVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATIVTGGKRHQLGK----NFFEPTL 424
Query: 715 MTECSIEHPICKNEIFGPVCAITKF 789
+ + + E FGP+ + KF
Sbjct: 425 LCNVTQDMLCTHEETFGPLAPVIKF 449
>sp|Q6A2H0|SSDH_PANTR Succinate semialdehyde dehydrogenase, mitochondrial precursor
(NAD(+)-dependent succinic semialdehyde dehydrogenase)
Length = 535
Score = 246 bits (627), Expect = 7e-65
Identities = 125/266 (46%), Positives = 170/266 (63%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MILQQPIGVVGVITPWNFPIAMVTRKLGAILAAGCTAIIKPAEDTPLSLLKFIE-CSQKY 177
++L+QP GV VITPWNFP AM+TRK+GA LAAGCT ++KPAEDTP S L E SQ
Sbjct: 189 LVLKQPXGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAG 248
Query: 178 IPPGVINVVTASKANSPKVGRVFCTDTRIKSLTFTGSSEVGKILYAQSADTMKRLSLELG 357
IP GV NV+ S+ N+ +VG CTD + ++FTGS+ GKIL +A+++KR+S+ELG
Sbjct: 249 IPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSMELG 308
Query: 358 GNAPFLIFQSXXXXXXXXXXXXCKFRNSGQACISANRMIVHESVHDEFVKKLIHEMTK-L 534
G APF++F S KFRN+GQ C+ +N+ +V +HD FVK M K L
Sbjct: 309 GLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNL 368
Query: 535 KLGYGLEKGVNQGPLINQDAVRKVEQLINRSVDLGAKVQIGGKRAVLEQYSKGNFFQPTV 714
++G G E+G QGPLIN+ AV KVE+ +N +V GA V GGKR L + NFF+PT+
Sbjct: 369 RVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGK----NFFEPTL 424
Query: 715 MTECSIEHPICKNEIFGPVCAITKFE 792
+ + + E FGP+ + KF+
Sbjct: 425 LCNVTQDMLCTHEETFGPLAPVIKFD 450
>sp|P55653|GABD_RHISN Probable succinate-semialdehyde dehydrogenase [NADP+] (SSDH)
Length = 491
Score = 233 bits (595), Expect = 3e-61
Identities = 117/266 (43%), Positives = 172/266 (64%), Gaps = 1/266 (0%)
Frame = +1
Query: 1 MILQQPIGVVGVITPWNFPIAMVTRKLGAILAAGCTAIIKPAEDTPLSL-LKFIECSQKY 177
++++QPIGVVG ITPWNFP +MV RK+ LAAGCT ++KPAE TPL F
Sbjct: 148 LVIKQPIGVVGAITPWNFPASMVARKISPALAAGCTVVLKPAEQTPLVAGAMFALAKLAG 207
Query: 178 IPPGVINVVTASKANSPKVGRVFCTDTRIKSLTFTGSSEVGKILYAQSADTMKRLSLELG 357
P GV+N+V AS+ ++ +GR CT+ +++ ++FTGS+EVG++L Q +D +KR+S ELG
Sbjct: 208 FPDGVLNLVYASEGDA--IGRELCTNPKVRKISFTGSTEVGRLLMRQCSDQIKRISFELG 265
Query: 358 GNAPFLIFQSXXXXXXXXXXXXCKFRNSGQACISANRMIVHESVHDEFVKKLIHEMTKLK 537
GNAPF++F KFRN+GQ C+SANR+ V V+ EF +K + LK
Sbjct: 266 GNAPFIVFDDADIDAAVDGAIQAKFRNAGQTCVSANRIYVQSGVYAEFAEKFTERVRTLK 325
Query: 538 LGYGLEKGVNQGPLINQDAVRKVEQLINRSVDLGAKVQIGGKRAVLEQYSKGNFFQPTVM 717
+G G + V GPLINQ+A++K+E I+ +V GA+V+ GG+R S G FF+PTV+
Sbjct: 326 VGDGFDPNVAIGPLINQEALKKIELHISDAVQKGARVRSGGRRT----GSSGTFFEPTVV 381
Query: 718 TECSIEHPICKNEIFGPVCAITKFEN 795
T+ S + + E FGP+ + +F++
Sbjct: 382 TDVSKTMRLAEEETFGPLAPLLRFDD 407
>sp|P25526|GABD_ECOLI Succinate-semialdehyde dehydrogenase [NADP+] (SSDH)
Length = 482
Score = 224 bits (572), Expect = 2e-58
Identities = 116/266 (43%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Frame = +1
Query: 1 MILQQPIGVVGVITPWNFPIAMVTRKLGAILAAGCTAIIKPAEDTPLSLLKFIECSQKY- 177
++++QPIGV ITPWNFP AM+TRK G LAAGCT ++KPA TP S L E + +
Sbjct: 141 IVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAG 200
Query: 178 IPPGVINVVTASKANSPKVGRVFCTDTRIKSLTFTGSSEVGKILYAQSADTMKRLSLELG 357
+P GV NVVT S VG ++ ++ L+FTGS+E+G+ L Q A +K++SLELG
Sbjct: 201 VPAGVFNVVTGSAG---AVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELG 257
Query: 358 GNAPFLIFQSXXXXXXXXXXXXCKFRNSGQACISANRMIVHESVHDEFVKKLIHEMTKLK 537
GNAPF++F KFRN+GQ C+ ANR+ V + V+D F +KL ++KL
Sbjct: 258 GNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLH 317
Query: 538 LGYGLEKGVNQGPLINQDAVRKVEQLINRSVDLGAKVQIGGKRAVLEQYSKGNFFQPTVM 717
+G GL+ GV GPLI++ AV KVE+ I +++ GA+V GGK GNFFQPT++
Sbjct: 318 IGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGK----AHERGGNFFQPTIL 373
Query: 718 TECSIEHPICKNEIFGPVCAITKFEN 795
+ + K E FGP+ + +F++
Sbjct: 374 VDVPANAKVSKEETFGPLAPLFRFKD 399
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,201,849
Number of Sequences: 369166
Number of extensions: 1673771
Number of successful extensions: 5064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4576
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)