Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_D10
(968 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-intera... 114 4e-25
sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-intera... 112 1e-24
sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interact... 109 1e-23
sp|Q8TC41|IBR1_HUMAN IBR domain containing protein 1 45 3e-04
sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52... 42 0.002
sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2) 42 0.003
sp|P50876|UB7I4_HUMAN Ubiquitin-conjugating enzyme 7-intera... 42 0.003
sp|Q925F3|UB7I4_MOUSE Ubiquitin-conjugating enzyme 7-intera... 41 0.006
sp|Q04638|YMG8_YEAST Hypothetical 54.1 kDa protein in DAK1-... 40 0.008
sp|Q9NWF9|UB7I1_HUMAN E3 ubiquitin ligase TRIAD3 (Ubiquitin... 39 0.017
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
virus X-associated protein 4) (HBV-associated factor 4)
(RING finger protein 54)
Length = 500
Score = 114 bits (285), Expect = 4e-25
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 8/141 (5%)
Frame = +1
Query: 79 FQCQTPNCDAFYEISESLKEFTXXXXXXXXXXXXXTVHLNENCEQFKK----RMETDVNM 246
+ C+TP+C + + + EFT +H NC+++++ R + DV
Sbjct: 359 YHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAA 418
Query: 247 KAIEEKIK----NKELMKCPKCSNYIVRSTGCYGIKCSNCSTELCWIRQMERWGPGGYGD 414
+ E +K E M+CP+C + + GC I+C+ C TE+CW+ + RWGPGG GD
Sbjct: 419 RQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGD 478
Query: 415 TSGGCRCEVDRKKCHPDCIGC 477
TSGGCRC V+ CHP C C
Sbjct: 479 TSGGCRCRVNGIPCHPSCQNC 499
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
(UbcM4-interacting protein 28)
Length = 498
Score = 112 bits (281), Expect = 1e-24
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Frame = +1
Query: 1 RAILSDNQFSIY-QVKCQDFSKKSIPHFQCQTPNCDAFYEISESLKEFTXXXXXXXXXXX 177
RA+LS + + + +S + C+TP+C + + + EFT
Sbjct: 330 RALLSPEDYQRFLDLGVSIAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLL 389
Query: 178 XXTVHLNENCEQFKK----RMETDVNMKAIEEKIK----NKELMKCPKCSNYIVRSTGCY 333
+H + NC +++ R + DV + E +K E M CP+C + + GC
Sbjct: 390 CKAIHEHMNCREYQDDLALRAQNDVAARQTTEMLKVMLQQGEAMHCPQCRIVVQKKDGCD 449
Query: 334 GIKCSNCSTELCWIRQMERWGPGGYGDTSGGCRCEVDRKKCHPDCIGC 477
I+C+ C TE+CW+ + RWGPGG GDTSGGCRC V+ CHP C C
Sbjct: 450 WIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNC 497
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
interacting with PKC) (Protein kinase C-binding protein
beta-15)
Length = 498
Score = 109 bits (273), Expect = 1e-23
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Frame = +1
Query: 1 RAILSDNQFSIY-QVKCQDFSKKSIPHFQCQTPNCDAFYEISESLKEFTXXXXXXXXXXX 177
RA+LS + + + +S + C+TP+C + + + EFT
Sbjct: 330 RALLSPEDYQRFLDLGVSIAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLL 389
Query: 178 XXTVHLNENCEQFKK----RMETDVNMKAIEEKIK----NKELMKCPKCSNYIVRSTGCY 333
+H NC +++ R DV + E ++ E M CP+C + + GC
Sbjct: 390 CKAIHERMNCREYQDDLAHRARNDVAAQQTTEMLRVMLQQGEAMYCPQCRIVVQKKDGCD 449
Query: 334 GIKCSNCSTELCWIRQMERWGPGGYGDTSGGCRCEVDRKKCHPDCIGC 477
I+C+ C TE+CW+ + RWGPGG GDTSGGCRC V+ CHP C C
Sbjct: 450 WIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNC 497
>sp|Q8TC41|IBR1_HUMAN IBR domain containing protein 1
Length = 275
Score = 45.1 bits (105), Expect = 3e-04
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = +1
Query: 190 HLNENCEQFKKRMETDVNMKAIEEKIKNKELMKCPKCSNYIVRSTGCYGIKCSNCSTELC 369
H NC+++KK + + A E + + KCPKC +I R+ GC + CS C+T C
Sbjct: 99 HEGVNCKEYKKGDKL-LRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFC 157
Query: 370 W-----IRQMERWGPGGYGDTSGGCR 432
+ RQ+ +G + GC+
Sbjct: 158 YRCGERYRQLRFFGDHTSNLSIFGCK 183
>sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52-GCN3 intergenic region
Length = 551
Score = 42.4 bits (98), Expect = 0.002
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 286 KCPKCSNYIVRSTGCYGIKCSNCSTELCWIRQMERWGPGG 405
+CPKCS I ++ GC + CS+C E CWI + W P G
Sbjct: 340 ECPKCSVNIEKNGGCNHMVCSSCKYEFCWICE-GPWAPHG 378
>sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2)
Length = 509
Score = 41.6 bits (96), Expect = 0.003
Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 3/147 (2%)
Frame = +1
Query: 64 KSIPHFQ-CQTPNCDAFYEISE--SLKEFTXXXXXXXXXXXXXTVHLNENCEQFKKRMET 234
KS P + C PNC + SE + + H +C+ KK +
Sbjct: 234 KSHPELRFCPGPNCQIIVQSSEISAKRAICKACHTGFCFRCGMDYHAPTDCQVIKKWLTK 293
Query: 235 DVNMKAIEEKIKNKELMKCPKCSNYIVRSTGCYGIKCSNCSTELCWIRQMERWGPGGYGD 414
+ I + CPKC I ++ GC ++C NC + CW+ G
Sbjct: 294 CADDSETANYI-SAHTKDCPKCHICIEKNGGCNHMQCFNCKHDFCWMCL-------GDWK 345
Query: 415 TSGGCRCEVDRKKCHPDCIGCTVHNNA 495
T G E R K +P+ +VH A
Sbjct: 346 THGSEYYECSRYKDNPNIANESVHVQA 372
>sp|P50876|UB7I4_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 4
(UbcM4-interacting protein 4) (RING finger protein 144)
Length = 292
Score = 41.6 bits (96), Expect = 0.003
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 229 ETDVNMKAIEEKIKNKELMKCPKCSNYIVRSTGCYGIKCSNCSTELCW 372
ET K E+ + + +CPKC YI R GC + C NC CW
Sbjct: 168 ETSAAFKMEED---DAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCW 212
>sp|Q925F3|UB7I4_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 4
(UbcM4-interacting protein 4) (RING finger protein 144)
Length = 292
Score = 40.8 bits (94), Expect = 0.006
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 280 LMKCPKCSNYIVRSTGCYGIKCSNCSTELCW 372
+ +CPKC YI R GC + C NC CW
Sbjct: 182 IKRCPKCRVYIERDEGCAQMMCKNCKHAFCW 212
>sp|Q04638|YMG8_YEAST Hypothetical 54.1 kDa protein in DAK1-ORC1 intergenic region
Length = 464
Score = 40.4 bits (93), Expect = 0.008
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = +1
Query: 217 KKRMETDVNMKAIEE------KIKNKELMKCPKCSNYIVRSTGCYGIKCSNCSTELCWI 375
++ +E +VN E+ K + L +CPKC + RS GC +KC C T C+I
Sbjct: 372 RRVLELEVNDYLAEKMLDLAIKKEGSNLQRCPKCKVVVERSEGCNKMKCEVCGTLFCFI 430
>sp|Q9NWF9|UB7I1_HUMAN E3 ubiquitin ligase TRIAD3 (Ubiquitin conjugating enzyme 7
interacting protein 1) (Zinc finger protein inhibiting
NF-kappa-B)
Length = 866
Score = 39.3 bits (90), Expect = 0.017
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 190 HLNENCEQFKKRMETDVNMK-AIEEKIKNKELMKCPKCSNYIVRSTGCYGIKCSNCSTEL 366
H CE+ ++ D+ + +IEEK+ + KC KC +++S GC + C C ++
Sbjct: 643 HNGLTCEELAEK--DDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSC-RCGAQM 699
Query: 367 CWI 375
C++
Sbjct: 700 CYL 702
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,647,764
Number of Sequences: 369166
Number of extensions: 1652848
Number of successful extensions: 4852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4838
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10096222345
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)