Planarian EST Database


Dr_sW_019_D06

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_019_D06
         (560 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31009|RS2_DROME  40S ribosomal protein S2 (Strings of pe...   273   3e-73
sp|P49154|RS2_URECA  40S ribosomal protein S2                     273   3e-73
sp|Q90YS3|RS2_ICTPU  40S ribosomal protein S2                     264   1e-70
sp|P15880|RS2_HUMAN  40S ribosomal protein S2 (S4) (LLRep3 p...   263   2e-70
sp|P27952|RS2_RAT  40S ribosomal protein S2 >gi|46397787|sp|...   263   2e-70
sp|O18789|RS2_BOVIN  40S ribosomal protein S2                     261   6e-70
sp|P51403|RS2_CAEEL  40S ribosomal protein S2                     261   1e-69
sp|P46791|RS2_CRIGR  40S ribosomal protein S2                     256   2e-68
sp|P49688|RS2_ARATH  40S ribosomal protein S2                     252   4e-67
sp|P27685|RS2_DICDI  40S ribosomal protein S2 (S4) (LLRep3 p...   248   6e-66
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
          Length = 267

 Score =  273 bits (697), Expect = 3e-73
 Identities = 132/172 (76%), Positives = 145/172 (84%)
 Frame = +2

Query: 8   LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
           LKDEVL I PVQKQTRAGQRTRFKA VA+GDNNGH+GLGVKC+KEVATAIRGAI  AKLS
Sbjct: 85  LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 144

Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
           V+PVR+GYWGNK+G  HTVPCKVTGKCGSVSVRLIPAPRGTGIV APV KKLL+MAGI+D
Sbjct: 145 VVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIED 204

Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
            YTSA G T TL NFAKATY AI +TY YL+PDLW   P    P+  ++ FL
Sbjct: 205 CYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFL 256
>sp|P49154|RS2_URECA 40S ribosomal protein S2
          Length = 278

 Score =  273 bits (697), Expect = 3e-73
 Identities = 134/172 (77%), Positives = 146/172 (84%)
 Frame = +2

Query: 8   LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
           LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS
Sbjct: 88  LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 147

Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
           V+PVR+GYWGNK+G  HTVPCKVTGKCGSV VRLIPAPRGTGIV APV KKLL+MAGI D
Sbjct: 148 VVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDD 207

Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
            YTSA GQTATL NFAKATY AI  TY YL+PDLW  T  T++P+ E+  +L
Sbjct: 208 CYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYL 259
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
          Length = 277

 Score =  264 bits (674), Expect = 1e-70
 Identities = 131/172 (76%), Positives = 143/172 (83%)
 Frame = +2

Query: 8   LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
           LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS
Sbjct: 87  LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 146

Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
           +IPVR+GYWGNK+G  HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D
Sbjct: 147 IIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 206

Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
            YTSA G TATL NFAKAT+ AI +TY YL+PDLW  T  T++P+ E    L
Sbjct: 207 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 258
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
          Length = 293

 Score =  263 bits (673), Expect = 2e-70
 Identities = 130/172 (75%), Positives = 143/172 (83%)
 Frame = +2

Query: 8   LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
           LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS
Sbjct: 102 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 161

Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
           ++PVR+GYWGNK+G  HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D
Sbjct: 162 IVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 221

Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
            YTSA G TATL NFAKAT+ AI +TY YL+PDLW  T  T++P+ E    L
Sbjct: 222 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|P27952|RS2_RAT 40S ribosomal protein S2
 sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
          Length = 293

 Score =  263 bits (673), Expect = 2e-70
 Identities = 130/172 (75%), Positives = 143/172 (83%)
 Frame = +2

Query: 8   LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
           LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS
Sbjct: 102 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 161

Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
           ++PVR+GYWGNK+G  HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D
Sbjct: 162 IVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 221

Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
            YTSA G TATL NFAKAT+ AI +TY YL+PDLW  T  T++P+ E    L
Sbjct: 222 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
          Length = 286

 Score =  261 bits (668), Expect = 6e-70
 Identities = 129/172 (75%), Positives = 142/172 (82%)
 Frame = +2

Query: 8   LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
           LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS
Sbjct: 95  LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 154

Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
           ++PVR+GYWGNK+G  HTVPCKVTG+CGSV VRLIP PRGTGIV APV KKLL MAGI D
Sbjct: 155 IVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDD 214

Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
            YTSA G TATL NFAKAT+ AI +TY YL+PDLW  T  T++P+ E    L
Sbjct: 215 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 266
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
          Length = 272

 Score =  261 bits (666), Expect = 1e-69
 Identities = 126/172 (73%), Positives = 143/172 (83%)
 Frame = +2

Query: 8   LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
           LKDEVL I PVQKQT AGQRTRFKA VA+GD+ GHVGLGVKC+KEVATAIRGAI  AKL+
Sbjct: 98  LKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLA 157

Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
           V+PVR+GYWGNK+G  HTVPCKVTGKC SV VRLIPAPRGTGIV APV KKLL MAGI+D
Sbjct: 158 VVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIED 217

Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
            YT+A G TATL NFAKATY A++RTY YL+PDLW      ++P+  H ++L
Sbjct: 218 CYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPYQRHHEYL 269
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
          Length = 202

 Score =  256 bits (655), Expect = 2e-68
 Identities = 126/158 (79%), Positives = 136/158 (86%)
 Frame = +2

Query: 8   LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
           LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI  AKLS
Sbjct: 42  LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 101

Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
           ++PVR+GYWGNK+G  HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D
Sbjct: 102 IVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 161

Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNAT 481
            YTSA G TATL NFAKAT+ AI +TY YL+PDLW  T
Sbjct: 162 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKET 199
>sp|P49688|RS2_ARATH 40S ribosomal protein S2
          Length = 285

 Score =  252 bits (644), Expect = 4e-67
 Identities = 118/174 (67%), Positives = 142/174 (81%)
 Frame = +2

Query: 2   PELKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAK 181
           P LKDEV+ I PVQKQTRAGQRTRFKA V +GD NGHVGLGVKC+KEVATAIRGAI  AK
Sbjct: 94  PTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAK 153

Query: 182 LSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGI 361
           LSV+PVR+GYWGNK+G  HTVPCKVTGKCGSV+VR++PAPRG+GIV A V KK+L  AGI
Sbjct: 154 LSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 213

Query: 362 QDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
            DV+TS+ G T TL NF KAT+  +++TY +L+P+ W  T  +++P+ EH  FL
Sbjct: 214 DDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFL 267
>sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 protein)
          Length = 265

 Score =  248 bits (634), Expect = 6e-66
 Identities = 120/169 (71%), Positives = 137/169 (81%)
 Frame = +2

Query: 8   LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
           LKDEV+ I PVQKQTRAGQRTRFKA V +GD+NGHVGLGVKCAKEVATAI GAI  AKLS
Sbjct: 89  LKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLS 148

Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
           VIPVR+GYWGNKLG  HTVP KVTGKCGSV+VRL+PAPRGTGIV A V KKLL  AG+ D
Sbjct: 149 VIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDD 208

Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 514
           VYTS+ G+T T+ NF  AT+ AI +T+ YL+PDLW      + P+ EH+
Sbjct: 209 VYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWREVKLIKTPYQEHS 257
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,473,321
Number of Sequences: 369166
Number of extensions: 1311257
Number of successful extensions: 3604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3460
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)