Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_D06
(560 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pe... 273 3e-73
sp|P49154|RS2_URECA 40S ribosomal protein S2 273 3e-73
sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 264 1e-70
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 p... 263 2e-70
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 263 2e-70
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 261 6e-70
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 261 1e-69
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 256 2e-68
sp|P49688|RS2_ARATH 40S ribosomal protein S2 252 4e-67
sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 p... 248 6e-66
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
Length = 267
Score = 273 bits (697), Expect = 3e-73
Identities = 132/172 (76%), Positives = 145/172 (84%)
Frame = +2
Query: 8 LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
LKDEVL I PVQKQTRAGQRTRFKA VA+GDNNGH+GLGVKC+KEVATAIRGAI AKLS
Sbjct: 85 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 144
Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
V+PVR+GYWGNK+G HTVPCKVTGKCGSVSVRLIPAPRGTGIV APV KKLL+MAGI+D
Sbjct: 145 VVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIED 204
Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
YTSA G T TL NFAKATY AI +TY YL+PDLW P P+ ++ FL
Sbjct: 205 CYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFL 256
>sp|P49154|RS2_URECA 40S ribosomal protein S2
Length = 278
Score = 273 bits (697), Expect = 3e-73
Identities = 134/172 (77%), Positives = 146/172 (84%)
Frame = +2
Query: 8 LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS
Sbjct: 88 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 147
Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
V+PVR+GYWGNK+G HTVPCKVTGKCGSV VRLIPAPRGTGIV APV KKLL+MAGI D
Sbjct: 148 VVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDD 207
Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
YTSA GQTATL NFAKATY AI TY YL+PDLW T T++P+ E+ +L
Sbjct: 208 CYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYL 259
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
Length = 277
Score = 264 bits (674), Expect = 1e-70
Identities = 131/172 (76%), Positives = 143/172 (83%)
Frame = +2
Query: 8 LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS
Sbjct: 87 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 146
Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
+IPVR+GYWGNK+G HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D
Sbjct: 147 IIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 206
Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 207 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 258
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 263 bits (673), Expect = 2e-70
Identities = 130/172 (75%), Positives = 143/172 (83%)
Frame = +2
Query: 8 LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS
Sbjct: 102 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 161
Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
++PVR+GYWGNK+G HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D
Sbjct: 162 IVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 221
Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 222 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 263 bits (673), Expect = 2e-70
Identities = 130/172 (75%), Positives = 143/172 (83%)
Frame = +2
Query: 8 LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS
Sbjct: 102 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 161
Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
++PVR+GYWGNK+G HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D
Sbjct: 162 IVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 221
Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 222 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
Length = 286
Score = 261 bits (668), Expect = 6e-70
Identities = 129/172 (75%), Positives = 142/172 (82%)
Frame = +2
Query: 8 LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS
Sbjct: 95 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 154
Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
++PVR+GYWGNK+G HTVPCKVTG+CGSV VRLIP PRGTGIV APV KKLL MAGI D
Sbjct: 155 IVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDD 214
Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 215 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 266
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
Length = 272
Score = 261 bits (666), Expect = 1e-69
Identities = 126/172 (73%), Positives = 143/172 (83%)
Frame = +2
Query: 8 LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
LKDEVL I PVQKQT AGQRTRFKA VA+GD+ GHVGLGVKC+KEVATAIRGAI AKL+
Sbjct: 98 LKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLA 157
Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
V+PVR+GYWGNK+G HTVPCKVTGKC SV VRLIPAPRGTGIV APV KKLL MAGI+D
Sbjct: 158 VVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIED 217
Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
YT+A G TATL NFAKATY A++RTY YL+PDLW ++P+ H ++L
Sbjct: 218 CYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPYQRHHEYL 269
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
Length = 202
Score = 256 bits (655), Expect = 2e-68
Identities = 126/158 (79%), Positives = 136/158 (86%)
Frame = +2
Query: 8 LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
LKDEVL I PVQKQTRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS
Sbjct: 42 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS 101
Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
++PVR+GYWGNK+G HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D
Sbjct: 102 IVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 161
Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNAT 481
YTSA G TATL NFAKAT+ AI +TY YL+PDLW T
Sbjct: 162 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKET 199
>sp|P49688|RS2_ARATH 40S ribosomal protein S2
Length = 285
Score = 252 bits (644), Expect = 4e-67
Identities = 118/174 (67%), Positives = 142/174 (81%)
Frame = +2
Query: 2 PELKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAK 181
P LKDEV+ I PVQKQTRAGQRTRFKA V +GD NGHVGLGVKC+KEVATAIRGAI AK
Sbjct: 94 PTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAK 153
Query: 182 LSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGI 361
LSV+PVR+GYWGNK+G HTVPCKVTGKCGSV+VR++PAPRG+GIV A V KK+L AGI
Sbjct: 154 LSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGI 213
Query: 362 QDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 523
DV+TS+ G T TL NF KAT+ +++TY +L+P+ W T +++P+ EH FL
Sbjct: 214 DDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFL 267
>sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 265
Score = 248 bits (634), Expect = 6e-66
Identities = 120/169 (71%), Positives = 137/169 (81%)
Frame = +2
Query: 8 LKDEVLSIKPVQKQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLS 187
LKDEV+ I PVQKQTRAGQRTRFKA V +GD+NGHVGLGVKCAKEVATAI GAI AKLS
Sbjct: 89 LKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLS 148
Query: 188 VIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQD 367
VIPVR+GYWGNKLG HTVP KVTGKCGSV+VRL+PAPRGTGIV A V KKLL AG+ D
Sbjct: 149 VIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDD 208
Query: 368 VYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHA 514
VYTS+ G+T T+ NF AT+ AI +T+ YL+PDLW + P+ EH+
Sbjct: 209 VYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWREVKLIKTPYQEHS 257
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,473,321
Number of Sequences: 369166
Number of extensions: 1311257
Number of successful extensions: 3604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3460
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)