Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_C24
(646 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 320 2e-87
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 320 2e-87
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 319 3e-87
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 316 3e-86
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 314 1e-85
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 313 2e-85
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 313 2e-85
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 313 2e-85
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 313 2e-85
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 313 2e-85
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 320 bits (821), Expect = 2e-87
Identities = 152/185 (82%), Positives = 169/185 (91%)
Frame = +2
Query: 2 YKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIK 181
YKIGGIGTVPVGRVETGIL+PGMVVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+K
Sbjct: 254 YKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVK 313
Query: 182 NVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFA 361
NVSVK+IRRGNVC DSKSDP ++A F +QVII+NHPG+I AGYSPV+DCHTAHIACKFA
Sbjct: 314 NVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFA 373
Query: 362 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 541
EL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTV
Sbjct: 374 ELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTV 433
Query: 542 AVGVI 556
AVGVI
Sbjct: 434 AVGVI 438
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 320 bits (820), Expect = 2e-87
Identities = 150/185 (81%), Positives = 171/185 (92%)
Frame = +2
Query: 2 YKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIK 181
YKIGGIGTVPVGRVETGILKPGM+VTFAPQ LTTEVKSVEMHHEAL EALPGDNVGFN+K
Sbjct: 254 YKIGGIGTVPVGRVETGILKPGMIVTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVK 313
Query: 182 NVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFA 361
N+S+K+IRRG+V SDSK+DPA++ F AQVIIMNHPG+I AGY+PVLDCHTAHIACKFA
Sbjct: 314 NISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFA 373
Query: 362 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 541
EL +K+DRRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPPLGRFAVRDM+QTV
Sbjct: 374 ELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTV 433
Query: 542 AVGVI 556
AVGVI
Sbjct: 434 AVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 319 bits (818), Expect = 3e-87
Identities = 151/185 (81%), Positives = 169/185 (91%)
Frame = +2
Query: 2 YKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIK 181
YKIGGIGTVPVGRVETGIL+PGMVVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+K
Sbjct: 254 YKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVK 313
Query: 182 NVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFA 361
NVSVK+IRRGNVC DSK+DP ++A F +QVII+NHPG+I AGYSPV+DCHTAHIACKFA
Sbjct: 314 NVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFA 373
Query: 362 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 541
EL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTV
Sbjct: 374 ELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTV 433
Query: 542 AVGVI 556
AVGVI
Sbjct: 434 AVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 316 bits (810), Expect = 3e-86
Identities = 150/185 (81%), Positives = 166/185 (89%)
Frame = +2
Query: 2 YKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIK 181
YKIGGIGTVPVGRVETG+LKPGM+VTFAP +TTEVKSVEMHHEAL EALPGDNVGFN+K
Sbjct: 254 YKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVK 313
Query: 182 NVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFA 361
N+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTAHIACKFA
Sbjct: 314 NISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFA 373
Query: 362 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 541
EL +KIDRRSGK LED PK KSGDA +V ++P KPMCVETFS+YPPLGRFAVRDM+QTV
Sbjct: 374 ELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTV 433
Query: 542 AVGVI 556
AVGVI
Sbjct: 434 AVGVI 438
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 314 bits (805), Expect = 1e-85
Identities = 149/185 (80%), Positives = 166/185 (89%)
Frame = +2
Query: 2 YKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIK 181
YKIGGIGTVPVGRVETG+LKPGM+VTFAP +TTEVKSVEMHHEAL EALPGDNVGFN+K
Sbjct: 254 YKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVK 313
Query: 182 NVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFA 361
N+SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTAHIACKFA
Sbjct: 314 NISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFA 373
Query: 362 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 541
EL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVRDM+QTV
Sbjct: 374 ELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTV 433
Query: 542 AVGVI 556
AVGVI
Sbjct: 434 AVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 313 bits (803), Expect = 2e-85
Identities = 150/185 (81%), Positives = 167/185 (90%)
Frame = +2
Query: 2 YKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIK 181
YKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+K
Sbjct: 254 YKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVK 313
Query: 182 NVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFA 361
NVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVLDCHTAHIACKFA
Sbjct: 314 NVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFA 373
Query: 362 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 541
EL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTV
Sbjct: 374 ELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTV 433
Query: 542 AVGVI 556
AVGVI
Sbjct: 434 AVGVI 438
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 313 bits (803), Expect = 2e-85
Identities = 150/185 (81%), Positives = 167/185 (90%)
Frame = +2
Query: 2 YKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIK 181
YKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+K
Sbjct: 254 YKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVK 313
Query: 182 NVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFA 361
NVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVLDCHTAHIACKFA
Sbjct: 314 NVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFA 373
Query: 362 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 541
EL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTV
Sbjct: 374 ELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTV 433
Query: 542 AVGVI 556
AVGVI
Sbjct: 434 AVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 313 bits (803), Expect = 2e-85
Identities = 146/185 (78%), Positives = 169/185 (91%)
Frame = +2
Query: 2 YKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIK 181
YKIGGIGTVPVGRVETG++K GMVVTFAP +TTEVKSVEMHHE L E LPGDNVGFN+K
Sbjct: 252 YKIGGIGTVPVGRVETGVIKAGMVVTFAPANVTTEVKSVEMHHEQLVEGLPGDNVGFNVK 311
Query: 182 NVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFA 361
NVSVK+IRRGNVCSDSK+DPA++A F AQVI++NHPG+I AGY+PVLDCHTAHIACKFA
Sbjct: 312 NVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFA 371
Query: 362 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 541
EL++KIDRRSGK LED PK KSGD+ +V+++PSKPMCVE +++YPPLGRFAVRDM+QTV
Sbjct: 372 ELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTV 431
Query: 542 AVGVI 556
AVGVI
Sbjct: 432 AVGVI 436
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 313 bits (802), Expect = 2e-85
Identities = 149/185 (80%), Positives = 167/185 (90%)
Frame = +2
Query: 2 YKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIK 181
YKIGGIGTVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+K
Sbjct: 254 YKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVK 313
Query: 182 NVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFA 361
NVSVK++RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVLDCHTAHIACKFA
Sbjct: 314 NVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFA 373
Query: 362 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 541
EL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVRDM+QTV
Sbjct: 374 ELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTV 433
Query: 542 AVGVI 556
AVGVI
Sbjct: 434 AVGVI 438
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 313 bits (802), Expect = 2e-85
Identities = 147/185 (79%), Positives = 170/185 (91%)
Frame = +2
Query: 2 YKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIK 181
YKIGGIGTVPVGRVETGI+KPGMVVTFAPQ +TTEVKSVEMHHE+L EA+PGDNVGFN+K
Sbjct: 254 YKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVK 313
Query: 182 NVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFA 361
NVSVK+IRRG+VCSDSK DPA++A F AQVIIMNHPG+I GY+PVLDCHTAHIACKF
Sbjct: 314 NVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFN 373
Query: 362 ELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTV 541
EL +K+DRR+GK +EDFPK KSGDAG+V L+P+KP+CVE+F++Y PLGRFAVRDM+QTV
Sbjct: 374 ELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTV 433
Query: 542 AVGVI 556
AVGVI
Sbjct: 434 AVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,538,298
Number of Sequences: 369166
Number of extensions: 1485362
Number of successful extensions: 4938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4657
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)