Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_C18
(654 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35206|COFA1_MOUSE Collagen alpha 1(XV) chain precursor ... 44 3e-04
sp|O93623|GLPK_PYRKO Glycerol kinase (ATP:glycerol 3-phosph... 33 0.65
>sp|O35206|COFA1_MOUSE Collagen alpha 1(XV) chain precursor [Contains: Endostatin
(Endostatin-XV)]
Length = 1367
Score = 44.3 bits (103), Expect = 3e-04
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 4/180 (2%)
Frame = +3
Query: 72 LHLIALPAPTMGDLKPMLRQPGGYSGAAFQCQQAGATYGFGRFLHPFINTDPFQLKFII- 248
LHL+AL P GD++ A FQC Q G F+++ L ++
Sbjct: 1197 LHLVALNTPVAGDIR-----------ADFQCFQQARAAGLLSTFRAFLSSHLQDLSTVVR 1245
Query: 249 KSKYTNIPIHNSRGEILANDY---XXXXXXXXXXXXXXXDFKKESILGNILAPCIWVGKE 419
K++ +PI N +G++L N++ F ++ + P V
Sbjct: 1246 KAERFGLPIVNLKGQVLFNNWDSIFSGDGGQFNTHIPIYSFDGRDVMTDPSWPQKVVWHG 1305
Query: 420 ATPNDVEYDKISESRCINWMSRDPFVNGLALMVSPQKPLFDESNKNLRSCSQQCYILCIQ 599
+ P+ V ++ + C W + D V G A +S K L ++ SC+ + +LCI+
Sbjct: 1306 SNPHGV---RLVDKYCEAWRTTDMAVTGFASPLSTGKIL----DQKAYSCANRLIVLCIE 1358
>sp|O93623|GLPK_PYRKO Glycerol kinase (ATP:glycerol 3-phosphotransferase) (Glycerokinase)
(GK)
Length = 497
Score = 33.1 bits (74), Expect = 0.65
Identities = 25/76 (32%), Positives = 34/76 (44%)
Frame = +3
Query: 9 IPTFPKQEITQPPYVNGLTKRLHLIALPAPTMGDLKPMLRQPGGYSGAAFQCQQAGATYG 188
IP E+ + V G TK+ L+ P GD +Q + AAF+ ATYG
Sbjct: 204 IPESVLPEVRESSEVYGYTKK-ELLGAEIPVSGDAGD--QQAALFGQAAFEAGMVKATYG 260
Query: 189 FGRFLHPFINTDPFQL 236
G F+ +NTD L
Sbjct: 261 TGSFI--LVNTDKMVL 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,764,269
Number of Sequences: 369166
Number of extensions: 1704834
Number of successful extensions: 3943
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3939
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5413810770
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)