Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_C08
(595 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATP... 275 5e-74
sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-... 272 5e-73
sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATP... 270 2e-72
sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATP... 270 2e-72
sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATP... 207 2e-53
sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATP... 186 5e-47
sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subuni... 185 8e-47
sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATP... 185 8e-47
sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subuni... 184 1e-46
sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subuni... 159 7e-39
>sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 40 kDa subunit) (M40)
Length = 348
Score = 275 bits (704), Expect = 5e-74
Identities = 129/176 (73%), Positives = 156/176 (88%), Gaps = 1/176 (0%)
Frame = +3
Query: 3 EFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSK 182
E +IEIIRNTLY+AY+E FY+FCK +GG TA++MCEILAFEADRR+ IITINSF TELSK
Sbjct: 172 EMNIEIIRNTLYKAYLEAFYDFCKQIGGTTADVMCEILAFEADRRAIIITINSFGTELSK 231
Query: 183 EDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKF 359
+DRA LYP+CG+L P+GL+ LARADDYEQVKAVA+YY+EY A+FEG G DK+LEDKF
Sbjct: 232 DDRAKLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDKF 291
Query: 360 FEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 527
FEHEV +NV++F+QQF+F VFYS +KLKEQE RNIVWI+ECV+Q+HRAKID+YI I
Sbjct: 292 FEHEVNLNVHAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKIDNYIPI 347
>sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1) (Vacuolar
proton pump d subunit 1) (V-ATPase 39 kDa subunit 1)
Length = 350
Score = 272 bits (695), Expect = 5e-73
Identities = 127/176 (72%), Positives = 155/176 (88%), Gaps = 1/176 (0%)
Frame = +3
Query: 3 EFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSK 182
E +IEIIRNTLY+AY+E FY FCK++GG TA++MCEILAFEADRR+ IITINSF TELSK
Sbjct: 174 EMNIEIIRNTLYKAYLEAFYNFCKNMGGATADVMCEILAFEADRRAIIITINSFGTELSK 233
Query: 183 EDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKF 359
+DRA LYP CG++YP+GL+ LARADDYEQVK VA+YY+EY A+F+G G DK+LEDKF
Sbjct: 234 DDRAKLYPNCGKMYPDGLAALARADDYEQVKTVAEYYAEYAALFDGSGNNPGDKTLEDKF 293
Query: 360 FEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 527
FEHEVK++V +F+QQF+F VFY+ +KLKEQE RNIVWIAECV+Q+HRAKID+YI I
Sbjct: 294 FEHEVKLDVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKIDNYIPI 349
>sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (Physophilin)
Length = 351
Score = 270 bits (690), Expect = 2e-72
Identities = 129/176 (73%), Positives = 150/176 (85%), Gaps = 1/176 (0%)
Frame = +3
Query: 3 EFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSK 182
E +IEIIRNTLY+AY+E FY+FC LGG TA+ MC IL FEADRR+FIITINSF TELSK
Sbjct: 175 EMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSK 234
Query: 183 EDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKF 359
EDRA L+P CGRLYPEGL+ LARADDYEQVK VADYY EYK +FEG G+ DK+LED+F
Sbjct: 235 EDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRF 294
Query: 360 FEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 527
FEHEVK+N +F+ QF+F VFY+ +KLKEQE RNIVWIAEC++QRHRAKID+YI I
Sbjct: 295 FEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPI 350
>sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
sp|P61421|VA0D_HUMAN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
Length = 351
Score = 270 bits (690), Expect = 2e-72
Identities = 129/176 (73%), Positives = 150/176 (85%), Gaps = 1/176 (0%)
Frame = +3
Query: 3 EFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSK 182
E +IEIIRNTLY+AY+E FY+FC LGG TA+ MC IL FEADRR+FIITINSF TELSK
Sbjct: 175 EMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSK 234
Query: 183 EDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKF 359
EDRA L+P CGRLYPEGL+ LARADDYEQVK VADYY EYK +FEG G+ DK+LED+F
Sbjct: 235 EDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRF 294
Query: 360 FEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 527
FEHEVK+N +F+ QF+F VFY+ +KLKEQE RNIVWIAEC++QRHRAKID+YI I
Sbjct: 295 FEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPI 350
>sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa accessory
protein) (DVA41)
Length = 356
Score = 207 bits (527), Expect = 2e-53
Identities = 104/176 (59%), Positives = 129/176 (73%), Gaps = 1/176 (0%)
Frame = +3
Query: 3 EFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFD-TELS 179
E + EIIRNTLY+AY+EDFY +CK LGG T IM +IL FEADRRS ITINSF TELS
Sbjct: 181 EMNNEIIRNTLYKAYLEDFYNYCKYLGGQTELIMSDILKFEADRRSINITINSFGATELS 240
Query: 180 KEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKF 359
K+DR LYP G LYPEG S L +A+D +QV+ + + YS Y+ F G N+KSLED F
Sbjct: 241 KDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSD-GVNNEKSLEDSF 299
Query: 360 FEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 527
FEHEV +N +F Q+ + VFY+ IKL+EQE+RNIVWIAEC+SQ + K++ YI I
Sbjct: 300 FEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYIPI 355
>sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa subunit)
Length = 364
Score = 186 bits (471), Expect = 5e-47
Identities = 91/193 (47%), Positives = 131/193 (67%), Gaps = 18/193 (9%)
Frame = +3
Query: 3 EFDIEIIRNTLYRAYIEDFYEFCKS----LGGITAEIMCEILAFEADRRSFIITINSFDT 170
E +IEI+RNTLY+ Y+EDFY F + G TAE+M E+L FEADRR+ IT+NSF T
Sbjct: 171 ELNIEIVRNTLYKNYLEDFYHFVNTHPDMAGTPTAEVMSELLEFEADRRAINITLNSFGT 230
Query: 171 ELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG------ 332
ELSK DR LYP G+LYPEG ML+RADD+E V+ + ++YK+ F+ G G
Sbjct: 231 ELSKADRKKLYPNFGQLYPEGTLMLSRADDFEGVRLAVEGVADYKSFFDAAGLGGGPSGP 290
Query: 333 --------NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVS 488
KSLED F++ E++++ +F +QF +A+ Y+ +KL+EQE+RNI WIAEC++
Sbjct: 291 GNMGGGGTEGKSLEDMFYQKEMEISKMAFTRQFTYAIVYAWVKLREQEIRNITWIAECIA 350
Query: 489 QRHRAKIDSYINI 527
Q + +I++YI++
Sbjct: 351 QNQKERINNYISV 363
>sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1)
(Vacuolar proton pump d subunit 1)
Length = 351
Score = 185 bits (469), Expect = 8e-47
Identities = 87/169 (51%), Positives = 125/169 (73%)
Frame = +3
Query: 3 EFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSK 182
+ +IEI+RNTLY+AY+EDFY+FC+ LGG TAEIM ++LAFEADRR+ ITINS TEL++
Sbjct: 175 DMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTR 234
Query: 183 EDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFF 362
EDR LY G LYP G LA +D +QV+ V + Y Y+AIF + G + L+ F+
Sbjct: 235 EDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFY 294
Query: 363 EHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKI 509
E EV+ +F QQF++AVF++ ++L+EQE+RN++WI+ECV+Q +++I
Sbjct: 295 EEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRI 343
>sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 39 kDa subunit)
(V-ATPase subunit M39)
Length = 343
Score = 185 bits (469), Expect = 8e-47
Identities = 92/176 (52%), Positives = 122/176 (69%)
Frame = +3
Query: 3 EFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSK 182
E IEIIRNTLY+AY+EDFY FCK +G TA+ M IL FEADRR+ ITINSF TELSK
Sbjct: 171 EQHIEIIRNTLYKAYLEDFYNFCKKIGACTADTMLPILEFEADRRAITITINSFGTELSK 230
Query: 183 EDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFF 362
E+RA +YP GRLYP S+LARA++ V+ EY F+ + KSL+D F
Sbjct: 231 EERAKMYPSFGRLYPFSTSILARAENAGDVENACSLVKEYSDFFD---QNSQKSLDDHFN 287
Query: 363 EHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINIL 530
E EV++N +F+QQF++ + Y+ +KL+EQE+RN+ WIAEC+SQ R + + + IL
Sbjct: 288 EKEVELNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDRALNIVPIL 343
>sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2)
Length = 351
Score = 184 bits (468), Expect = 1e-46
Identities = 87/169 (51%), Positives = 124/169 (73%)
Frame = +3
Query: 3 EFDIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSK 182
+ +IEI+RNTLY+AY+EDFY FC+ LGG TAEIM ++LAFEADRR+ ITINS TEL++
Sbjct: 175 DMNIEIMRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTR 234
Query: 183 EDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFF 362
EDR LY G LYP G LA +D +QV+ V + Y Y+AIF + G + L+ F+
Sbjct: 235 EDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFY 294
Query: 363 EHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKI 509
E EV+ +F QQF++AVF++ ++L+EQE+RN++WI+ECV+Q +++I
Sbjct: 295 EEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRI 343
>sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa
subunit 2)
Length = 350
Score = 159 bits (401), Expect = 7e-39
Identities = 72/175 (41%), Positives = 119/175 (68%), Gaps = 2/175 (1%)
Frame = +3
Query: 9 DIEIIRNTLYRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKED 188
D+EI+R LYRAY+E FY +C LGG TA +M +L+FEADRR+ I +N+ +++ ++
Sbjct: 173 DVEIVRAHLYRAYLEKFYAYCSQLGGNTANVMTNLLSFEADRRTITIAVNAIGSDIIPKE 232
Query: 189 RANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDK--SLEDKFF 362
R ++P CG L L+ ++ +D ++++ V + + Y +F+ + +D +LED+F
Sbjct: 233 RLKMFPTCGYLPKIALASMSTLNDTDKIRDVCNVFDGYGKMFDNLERDSDGMITLEDRFL 292
Query: 363 EHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYINI 527
E K NV +F+QQ++F +FYS IKLK+ E+RNIVWI+EC++QR +I+++I I
Sbjct: 293 MMEAKKNVQTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRINAFIPI 347
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,877,669
Number of Sequences: 369166
Number of extensions: 1089562
Number of successful extensions: 2929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2910
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)