Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_C04
(656 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 48 2e-05
sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, si... 37 0.045
sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, si... 37 0.045
sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, sign... 37 0.045
sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, si... 37 0.045
sp|Q8NHZ7|MB3L2_HUMAN Methyl-CpG binding domain protein 3-l... 33 0.85
sp|Q10900|CTPI_MYCTU Probable cation-transporting ATPase I 30 7.2
sp|P29518|BT1_MAIZE Brittle-1 protein, chloroplast precursor 29 9.4
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33
Length = 308
Score = 48.1 bits (113), Expect = 2e-05
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Frame = +1
Query: 1 LRDRLHLQIDSIGNPSEAYYNISYALAEVKKVMIP--DPN-----EQAPGQMPMVTPLMG 159
L ++LH++I SI +P+EA+ ++YAL E+KK + P DPN G M + +MG
Sbjct: 141 LNEQLHIEIISIASPAEAHARMAYALTEIKKYITPEEDPNYMMMAGHGAGPMMGMGGMMG 200
Query: 160 GPNP 171
GP P
Sbjct: 201 GPGP 204
>sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 37.0 bits (84), Expect = 0.045
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 13 LHLQIDSIGNPSEAYYNISYALAEVKKVMIPD-PNEQAPGQMPMVTPLMGGPNPGFG 180
LH+ I+ G P EAY +++A+ EVKK ++PD ++ Q ++ L G P P G
Sbjct: 227 LHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRG 283
>sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 37.0 bits (84), Expect = 0.045
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 13 LHLQIDSIGNPSEAYYNISYALAEVKKVMIPD-PNEQAPGQMPMVTPLMGGPNPGFG 180
LH+ I+ G P EAY +++A+ EVKK ++PD ++ Q ++ L G P P G
Sbjct: 227 LHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRG 283
>sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 37.0 bits (84), Expect = 0.045
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 13 LHLQIDSIGNPSEAYYNISYALAEVKKVMIPD-PNEQAPGQMPMVTPLMGGPNPGFG 180
LH+ I+ G P EAY +++A+ EVKK ++PD ++ Q ++ L G P P G
Sbjct: 227 LHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRG 283
>sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, signal transduction associated
protein 1 (Src-associated in mitosis 68 kDa protein)
(Sam68)
Length = 433
Score = 37.0 bits (84), Expect = 0.045
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Frame = +1
Query: 13 LHLQIDSIGNPSEAYYNISYALAEVKKVMIPDPNEQAPGQ----------MPMVTPLMGG 162
LH+ I+ G P EAY +++A+ EVKK ++PD + + +P T GG
Sbjct: 210 LHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPTRGRGG 269
Query: 163 PNPGFGAMRTQP 198
P G GA P
Sbjct: 270 PVRGRGAAPPPP 281
>sp|Q8NHZ7|MB3L2_HUMAN Methyl-CpG binding domain protein 3-like 2 (MBD3-like 2)
Length = 204
Score = 32.7 bits (73), Expect = 0.85
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 13 LHLQ-IDSIGNPSEAYYNISYALAEVKKVMIPDPNEQAPGQMPMVTPLMGGPNPGFGAMR 189
LHL+ + SI P A ++ A AE + P E PG+ P V GGP PG G
Sbjct: 109 LHLESVLSILAPGTASESLDRAGAE----RVRSPLEPTPGRFPAVA---GGPTPGMGCQL 161
Query: 190 TQPMTQQ 210
P++ Q
Sbjct: 162 PPPLSGQ 168
>sp|Q10900|CTPI_MYCTU Probable cation-transporting ATPase I
Length = 1625
Score = 29.6 bits (65), Expect = 7.2
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Frame = +1
Query: 13 LHLQIDSIGNPSEAYYNISYALAEVKKVMIPDPNE---------QAPGQMPMVTPLMG 159
LH Q D G + Y ++ AL ++ PDP+E AP Q P TP G
Sbjct: 438 LHAQGDEPGWDDDRVYEVADALLHGEQAPEPDPDELPATGARLRWAPAQGPSATPAQG 495
>sp|P29518|BT1_MAIZE Brittle-1 protein, chloroplast precursor
Length = 436
Score = 29.3 bits (64), Expect = 9.4
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 43 PSEAYYNISYALAEVKKVMIPDPNEQAPGQMPMVTPLMGGPNPGFGA-MRTQPM 201
PS+A + +Y A KK + P +E P ++P+ TPL+ G GF + + T PM
Sbjct: 201 PSKAIEHFTYDTA--KKFLTPKGDE--PPKIPIPTPLVAGALAGFASTLCTYPM 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,023,164
Number of Sequences: 369166
Number of extensions: 1229609
Number of successful extensions: 2755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2752
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)