Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_C02
(470 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VJD2|MKI1_DROME Probable mitogen-activated protein kin... 49 4e-06
sp|Q99396|CY42_TRYBB Receptor-type adenylate cyclase GRESAG... 31 1.6
sp|P33311|MDL2_YEAST ATP-dependent permease MDL2 30 3.6
sp|Q14202|ZN261_HUMAN Zinc finger protein 261 (Zinc finger ... 29 6.2
sp|Q9JLM4|ZN261_MOUSE Zinc finger protein 261 (DXHXS6673E p... 29 6.2
>sp|Q9VJD2|MKI1_DROME Probable mitogen-activated protein kinase kinase interacting
protein
Length = 124
Score = 49.3 bits (116), Expect = 4e-06
Identities = 28/75 (37%), Positives = 41/75 (54%)
Frame = +3
Query: 117 DENVDQFVQPHMQTSFTTAIQQAAKMNMGSTKYIITRYTEFVICQFNFARDPTKPLIAVV 296
++NVD + P +FTTA QA+K+ +G K II+ Y+ + + Q N PLI
Sbjct: 38 EKNVDFALMPSFIPTFTTACDQASKLGLGRNKTIISMYSNYQVVQMN-----KLPLILTF 92
Query: 297 VGNNMADIGMMLALE 341
VG + G +LALE
Sbjct: 93 VGAENCNTGHILALE 107
>sp|Q99396|CY42_TRYBB Receptor-type adenylate cyclase GRESAG 4.2 (ATP
pyrophosphate-lyase) (Adenylyl cyclase)
Length = 572
Score = 30.8 bits (68), Expect = 1.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 329 HHSDIRHIIANYNCN*WLRGISCEIKLTNHKFCISCDYIFSATHI 195
HHS +R +I NY+C E+K F I+C F+A +
Sbjct: 296 HHSMVRSLIENYDC--------YEVKTVGDSFMIACKSPFAAVQL 332
>sp|P33311|MDL2_YEAST ATP-dependent permease MDL2
Length = 820
Score = 29.6 bits (65), Expect = 3.6
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 198 MGSTKYIITRYTEFVICQFNFARDPTKPLIAVVVGNNMADIGMMLALEPVLQHVVEFFSP 377
+GS Y+++R + D K LI VVG +GMM +L P L ++ FF+P
Sbjct: 278 LGSDAYVVSRSMTQKVS------DGVKALICGVVG-----VGMMCSLSPQLSILLLFFTP 326
Query: 378 LV 383
V
Sbjct: 327 PV 328
>sp|Q14202|ZN261_HUMAN Zinc finger protein 261 (Zinc finger MYM-type protein 3) (DXS6673E
protein)
Length = 1370
Score = 28.9 bits (63), Expect = 6.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 132 QFVQPHMQTSFTTAIQQAAKMN--MGSTKYIITRY 230
Q + HMQ SFT ++Q+ K G+TK + RY
Sbjct: 1223 QTAEEHMQLSFTNVVRQSRKCTTPRGTTKVVSIRY 1257
>sp|Q9JLM4|ZN261_MOUSE Zinc finger protein 261 (DXHXS6673E protein)
Length = 1370
Score = 28.9 bits (63), Expect = 6.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 132 QFVQPHMQTSFTTAIQQAAKMN--MGSTKYIITRY 230
Q + HMQ SFT ++Q+ K G+TK + RY
Sbjct: 1224 QTAEEHMQLSFTNVVRQSRKCTTPRGTTKVVSIRY 1258
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,947,883
Number of Sequences: 369166
Number of extensions: 988671
Number of successful extensions: 2082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2081
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)