Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_B23-1
(588 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich ... 77 2e-14
sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich do... 77 2e-14
sp|P38159|HNRPG_HUMAN Heterogeneous nuclear ribonucleoprote... 46 6e-05
sp|Q15414|RBY1A_HUMAN RNA binding motif protein, Y chromoso... 46 6e-05
sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich... 46 6e-05
sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2... 46 6e-05
sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich... 46 6e-05
sp|P84586|HNRPG_RAT Heterogeneous nuclear ribonucleoprotein... 45 2e-04
sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E ... 44 3e-04
sp|O35479|HNRPG_MOUSE Heterogeneous nuclear ribonucleoprote... 44 4e-04
>sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich domain 1
sp|Q4R5N1|RNPS1_MACFA RNA-binding protein with serine-rich domain 1
sp|Q15287|RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 (SR-related protein
LDC2)
Length = 305
Score = 77.4 bits (189), Expect = 2e-14
Identities = 34/84 (40%), Positives = 56/84 (66%)
Frame = +1
Query: 1 HLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAEMNNGQLDGQEISV 180
H+ EIFST+G +K +++P +R HP ++G+AY+E+++P A++++ M+ GQ+DGQEI+
Sbjct: 176 HIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 235
Query: 181 VEVPVPRVDHEKDRPRRSSRDRIM 252
V P + PRR S R M
Sbjct: 236 TAVLAP---WPRPPPRRFSPPRRM 256
>sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich domain 1
Length = 305
Score = 77.4 bits (189), Expect = 2e-14
Identities = 34/84 (40%), Positives = 56/84 (66%)
Frame = +1
Query: 1 HLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAEMNNGQLDGQEISV 180
H+ EIFST+G +K +++P +R HP ++G+AY+E+++P A++++ M+ GQ+DGQEI+
Sbjct: 176 HIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 235
Query: 181 VEVPVPRVDHEKDRPRRSSRDRIM 252
V P + PRR S R M
Sbjct: 236 TAVLAP---WPRPPPRRFSPPRRM 256
>sp|P38159|HNRPG_HUMAN Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA-binding
motif protein, X chromosome) (Glycoprotein p43)
Length = 391
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +1
Query: 4 LKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAEMNNGQLDGQEISVV 183
L+ +F +G + V + DR +RGFA++ ++ PA A+ + +MN LDG+ I V
Sbjct: 24 LEAVFGKYGRIVEVLLMKDR-ETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 184 EVPVPRVDHEKDRPRRSSRDR 246
+ P + + P R R
Sbjct: 83 QATKPSFESGRRGPPPPPRSR 103
>sp|Q15414|RBY1A_HUMAN RNA binding motif protein, Y chromosome, family 1 member A1
(RNA-binding motif protein 1)
Length = 496
Score = 46.2 bits (108), Expect = 6e-05
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 4 LKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAEMNNGQLDGQEISVV 183
LK +F G + V + DR +RGFA+I +++PA A+ + +MN L G+ I V
Sbjct: 24 LKAVFGKHGPISEVLLIKDRTSK--SRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81
Query: 184 EVPVPRVDH-EKDRPRRSSRDR 246
+ P + RP SSR+R
Sbjct: 82 QAKKPSFQSGGRRRPPASSRNR 103
>sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +1
Query: 4 LKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAEMNNGQLDGQEISV 180
L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++ M+ LDG+E+ V
Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 87
>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +1
Query: 4 LKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAEMNNGQLDGQEISV 180
L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++ M+ LDG+E+ V
Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 87
>sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
Length = 221
Score = 46.2 bits (108), Expect = 6e-05
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +1
Query: 4 LKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAEMNNGQLDGQEISV 180
L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++ M+ LDG+E+ V
Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 87
>sp|P84586|HNRPG_RAT Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA-binding
motif protein, X chromosome)
Length = 388
Score = 44.7 bits (104), Expect = 2e-04
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +1
Query: 4 LKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAEMNNGQLDGQEISVV 183
L+ +F +G + + + DR +RGFA++ ++ PA A+ +MN LDG+ I V
Sbjct: 24 LEAVFGKYGRIVEILLMKDR-ETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVE 82
Query: 184 EVPVPRVDHEKDRPRRSSRDR 246
+ P + + P R R
Sbjct: 83 QATKPSFESGRRGPPPPPRSR 103
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E)
(Cyclophilin E) (Cyclophilin 33)
Length = 300
Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +1
Query: 4 LKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAEMNNGQLDGQEISVV 183
L F +G + +++P+D + + +RGFA+IEY+ A +I MN+ +L G+ I V
Sbjct: 22 LNNAFIPFGDIADIQMPAD-YESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVN 80
Query: 184 EVPVPRVDHEKDRP 225
RV + +P
Sbjct: 81 LAKPVRVKEDSFKP 94
>sp|O35479|HNRPG_MOUSE Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA-binding
motif protein, X chromosome)
Length = 388
Score = 43.5 bits (101), Expect = 4e-04
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +1
Query: 4 LKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAEMNNGQLDGQEISVV 183
L+ +F +G + + + DR +RGFA++ + PA A+ + +MN LDG+ I V
Sbjct: 24 LEAVFGKYGRIVEIILMKDR-ETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 184 EVPVPRVDHEKDRPRRSSRDR 246
+ P + + P R R
Sbjct: 83 QATKPFFESGRRGPPPPPRSR 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,184,560
Number of Sequences: 369166
Number of extensions: 1222785
Number of successful extensions: 4523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4488
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)