Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_B20
(208 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q97LN7|PYRC_CLOAB Dihydroorotase (DHOase) 29 3.9
sp|P27801|PEP3_YEAST Vacuolar membrane protein PEP3 28 6.6
>sp|Q97LN7|PYRC_CLOAB Dihydroorotase (DHOase)
Length = 424
Score = 28.9 bits (63), Expect = 3.9
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 18/75 (24%)
Frame = +2
Query: 8 LIVLQDGFVVDGVHLWEGFILILVDDQEL--------HDSDVEQV----------FITLL 133
+I++++G+V+D + EG IL+D + + D D+E + FI +
Sbjct: 1 MIIIKNGYVIDPLTKREGKFDILIDGENVVRISQDIGIDDDIEVIDAEDCIVSPGFIDIH 60
Query: 134 ISYRPPHRSQKENVI 178
+R P ++KE++I
Sbjct: 61 SHFRDPGFTEKEDII 75
>sp|P27801|PEP3_YEAST Vacuolar membrane protein PEP3
Length = 918
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 35 VDGVHLWEGFILILVDDQELHDSDVEQVFITLLI 136
+DG+ WEG +L+ + D L+ DV + L++
Sbjct: 149 IDGIAYWEGSLLLTIKDNILYWRDVTNMKFPLVL 182
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,738,267
Number of Sequences: 369166
Number of extensions: 262744
Number of successful extensions: 527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)