Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_B19-2
(405 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6PIJ6|FBX38_HUMAN F-box only protein 38 (Modulator of K... 31 0.82
sp|P23615|SPT6_YEAST Transcription initiation protein SPT6 30 1.8
sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4... 28 5.3
sp|P64919|YK03_MYCTU Hypothetical protein Rv2003c/MT2059 >g... 28 5.3
sp|Q63755|PRDM2_RAT PR-domain zinc finger protein 2 (Retino... 28 5.3
sp|Q96RT7|GCP6_HUMAN Gamma-tubulin complex component 6 (GCP-6) 28 5.3
sp|Q7WHH4|GLNE_BORBR Glutamate-ammonia-ligase adenylyltrans... 28 7.0
sp|Q7W993|GLNE_BORPA Glutamate-ammonia-ligase adenylyltrans... 28 7.0
sp|Q7VYQ0|GLNE_BORPE Glutamate-ammonia-ligase adenylyltrans... 28 7.0
sp|Q02952|AKA12_HUMAN A-kinase anchor protein 12 (A-kinase ... 28 9.1
>sp|Q6PIJ6|FBX38_HUMAN F-box only protein 38 (Modulator of KLF7 activity homolog) (MoKA)
Length = 1188
Score = 31.2 bits (69), Expect = 0.82
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Frame = +1
Query: 28 NAKARSMRAHLPAHHRFQTANEENEVFQN--------GVGQLGGEESTVSDRSEEMATSG 183
NA+ + H HH ++EEN+ Q+ L E V + E +A SG
Sbjct: 500 NAQNNNANIHDNNHHHPDDSDEENDFRQDLQPGEQQFAADALNEMEDIVQEDGEVVAESG 559
Query: 184 ANNNQHSE----VGVIREQAG 234
N HS+ V V EQAG
Sbjct: 560 NNTPAHSQAIIPVDVDEEQAG 580
>sp|P23615|SPT6_YEAST Transcription initiation protein SPT6
Length = 1451
Score = 30.0 bits (66), Expect = 1.8
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 76 FQTANEENEVFQNGVGQLGGEESTVSDRSEEMATSGANNNQHSEVGVIREQAGINIS 246
F+ ANE NE+F N G+ G + + + S E + S++G+ E G NIS
Sbjct: 475 FKYANEINEMFINHTGKTG--KKHLKNSSYEKFKASPLYQAVSDIGISAEDVGENIS 529
>sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 (SCC2 homolog)
Length = 1583
Score = 28.5 bits (62), Expect = 5.3
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 19 VLRNAKARSMRAHLPAHHRFQTANEENEVFQNGVGQLGGEESTVSDRSEEMATSGANNNQ 198
+++ + + + +P + Q + FQN QL EES++ R +M GA
Sbjct: 15 IIKGLQYTPLASSIPLENGLQNVLYPSSKFQNEPLQLNSEESSIMQRYVDMLNPGATFVN 74
Query: 199 HSE 207
SE
Sbjct: 75 DSE 77
>sp|P64919|YK03_MYCTU Hypothetical protein Rv2003c/MT2059
sp|P64920|YK26_MYCBO Hypothetical protein Mb2026c
Length = 285
Score = 28.5 bits (62), Expect = 5.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 259 CAKYQIYLCQPARGLHRPPNADCC 188
C + L P RG RPPNADCC
Sbjct: 23 CRSIRARLLLP-RGRSRPPNADCC 45
>sp|Q63755|PRDM2_RAT PR-domain zinc finger protein 2 (Retinoblastoma protein-interacting
zinc-finger protein) (Zinc finger protein RIZ)
Length = 1706
Score = 28.5 bits (62), Expect = 5.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 188 LAPDVAISSDLSETVDSSPPNCPTPFWNTSFSS 90
L P V +S S D+SP CP+PF NT+ S
Sbjct: 981 LLPTVPLSHPSS---DASPQQCPSPFSNTTAQS 1010
>sp|Q96RT7|GCP6_HUMAN Gamma-tubulin complex component 6 (GCP-6)
Length = 1819
Score = 28.5 bits (62), Expect = 5.3
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 58 LPAHHRFQTANEE--NEVFQNGVGQLGGEESTVSDRSEEMATSGANNNQHSEVGVIREQA 231
LP+H + A EE ++ + GQ+ G D + E+A + N H V +
Sbjct: 1004 LPSHPPRRAALEEGSSQPTERLFGQVSGGGLPTGDYASEIAPTRPRWNTHGHVSDASIRV 1063
Query: 232 GINISDI 252
G N+SD+
Sbjct: 1064 GENVSDV 1070
>sp|Q7WHH4|GLNE_BORBR Glutamate-ammonia-ligase adenylyltransferase
([Glutamate--ammonia-ligase] adenylyltransferase)
(Glutamine-synthetase adenylyltransferase) (ATase)
Length = 941
Score = 28.1 bits (61), Expect = 7.0
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 40 RSMRAHLPAHH---RFQTANEENEVFQNGVGQLGGEESTVS 153
RS+ A L A H R Q+ + E+ G+G+LGG E VS
Sbjct: 111 RSVAAELAAVHGLpreQSTGDPQEMLIVGMGKLGGRELNVS 151
>sp|Q7W993|GLNE_BORPA Glutamate-ammonia-ligase adenylyltransferase
([Glutamate--ammonia-ligase] adenylyltransferase)
(Glutamine-synthetase adenylyltransferase) (ATase)
Length = 941
Score = 28.1 bits (61), Expect = 7.0
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 40 RSMRAHLPAHH---RFQTANEENEVFQNGVGQLGGEESTVS 153
RS+ A L A H R Q+ + E+ G+G+LGG E VS
Sbjct: 111 RSVAAELAAVHGLpreQSTGDPQEMLIVGMGKLGGRELNVS 151
>sp|Q7VYQ0|GLNE_BORPE Glutamate-ammonia-ligase adenylyltransferase
([Glutamate--ammonia-ligase] adenylyltransferase)
(Glutamine-synthetase adenylyltransferase) (ATase)
Length = 941
Score = 28.1 bits (61), Expect = 7.0
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 40 RSMRAHLPAHH---RFQTANEENEVFQNGVGQLGGEESTVS 153
RS+ A L A H R Q+ + E+ G+G+LGG E VS
Sbjct: 111 RSVAAELAAVHGLpreQSTGDPQEMLIVGMGKLGGRELNVS 151
>sp|Q02952|AKA12_HUMAN A-kinase anchor protein 12 (A-kinase anchor protein 250 kDa) (AKAP
250) (Myasthenia gravis autoantigen gravin)
Length = 1781
Score = 27.7 bits (60), Expect = 9.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 85 ANEENEVFQNGVGQLGGEESTVSDRSEEMATSGA 186
+ EE EV VGQ E+ + D +EMAT A
Sbjct: 96 SQEEEEVIVTEVGQRDSEDVSERDSDKEMATKSA 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,128,743
Number of Sequences: 369166
Number of extensions: 918388
Number of successful extensions: 2450
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2450
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)